[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 51 items for (author: del & vas & m)

EMDB-70119:
Pr/Pr homodimer of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

EMDB-52019:
Structure of A16/G9 in complex with A56/K2 (vaccinia virus)
Method: single particle / : Vernuccio R, Meola A, Guardado-Calvo P

EMDB-53936:
Structure of A16/G9 in complex with A56/K2 at pH 5.5 (vaccinia virus)
Method: single particle / : Vernuccio R, Battini L, Meola A, Guardado-Calvo P

PDB-9hbk:
Structure of A16/G9 in complex with A56/K2 (vaccinia virus)
Method: single particle / : Vernuccio R, Meola A, Guardado-Calvo P

PDB-9rdh:
Structure of A16/G9 in complex with A56/K2 at pH 5.5 (vaccinia virus)
Method: single particle / : Vernuccio R, Battini L, Meola A, Guardado-Calvo P

EMDB-19459:
The human prohibitin complex
Method: subtomogram averaging / : Lange F, Ratz M, Dohrke JN, Wenzel D, Riedel D, Ilgen P, Jakobs S

PDB-8rrh:
The human prohibitin complex
Method: subtomogram averaging / : Lange F, Ratz M, Dohrke JN, Wenzel D, Riedel D, Ilgen P, Jakobs S

EMDB-40601:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40625:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40626:
cytochrome bc1 complex from Pseudomonas aeruginosa
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40627:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa (Locally refined cytochrome cbb3)
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40637:
cytochrome bc1 complex from Pseudomonas aeruginosa (Locally refined bc1 monomer with Rieske head domain in b state)
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40638:
cytochrome bc1 complex from Pseudomonas aeruginosa (Locally refined bc1 monomer with Rieske head domain in c state)
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40643:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa (Locally refined cytochrome cbb3 with CcoP1 isoform)
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40645:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa (Locally refined cytochrome cbb3 with CcoP2 isoform)
Method: single particle / : Di Trani JM, Rubinstein JL

PDB-8smr:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Method: single particle / : Di Trani JM, Rubinstein JL

PDB-8snh:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-15713:
Structure of Complement C5 in Complex with small molecule inhibitor and CVF
Method: single particle / : Srinivas H

PDB-8ayh:
Structure of Complement C5 in Complex with small molecule inhibitor and CVF
Method: single particle / : Srinivas H

EMDB-26936:
Complex of Plasmodium falciparum circumsporozoite protein with 850 Fab
Method: single particle / : Kucharska I, Prieto K, Rubinstein JL, Julien JP

PDB-7v05:
Complex of Plasmodium falciparum circumsporozoite protein with 850 Fab
Method: single particle / : Kucharska I, Prieto K, Rubinstein JL, Julien JP

PDB-7t3h:
MicroED structure of Dynobactin
Method: electron crystallography / : Yoo BK, Kaiser JT, Rees DC, Miller RD, Iinishi A, Lewis K, Bowman S

EMDB-14633:
PucA-LH2 complex from Rps. palustris
Method: single particle / : Qian P, Cogdell RJ

PDB-7zcu:
PucA-LH2 complex from Rps. palustris
Method: single particle / : Qian P, Cogdell RJ

EMDB-14650:
PucB-LH2 complex from Rps. palustris
Method: single particle / : Qian P, Cogdell RJ, Nguyen-Phan TC

EMDB-14682:
PucD-LH2 complex from Rps. palustris
Method: single particle / : Qian P, Cogdell RJ, Nguyen-Phan TC

EMDB-14685:
PucE-LH2 complex from Rps. palustris
Method: single particle / : Qian P, Cogdell RJ, Nguyen-Phan TC

PDB-7zdi:
PucB-LH2 complex from Rps. palustris
Method: single particle / : Qian P, Cogdell RJ, Nguyen-Phan TC

PDB-7ze3:
PucD-LH2 complex from Rps. palustris
Method: single particle / : Qian P, Cogdell RJ, Nguyen-Phan TC

PDB-7ze8:
PucE-LH2 complex from Rps. palustris
Method: single particle / : Qian P, Cogdell RJ, Nguyen-Phan TC

EMDB-14242:
E. coli BAM complex (BamABCDE) bound to dynobactin A
Method: single particle / : Jakob RP, Hiller S

PDB-7r1w:
E. coli BAM complex (BamABCDE) bound to dynobactin A
Method: single particle / : Jakob RP, Hiller S, Maier T

EMDB-23046:
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (decamer)
Method: single particle / : Llauger G, Melero R

EMDB-23047:
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (dodecamer)
Method: single particle / : Llauger G, Melero R

PDB-7kvc:
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (decamer)
Method: single particle / : Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Arranz R, Carazo JM, Goldbaum FA, del Vas M, Otero LH

PDB-7kvd:
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (dodecamer)
Method: single particle / : Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Arranz R, Carazo JM, Goldbaum FA, del Vas M, Otero LH

EMDB-11953:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Composite Map
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-11954:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 2)
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-14810:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Consensus Map
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-14811:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Focused Refinement
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-4995:
Subtomogram average of a part of the rabies lyssavirus ribonucleoprotein
Method: subtomogram averaging / : Riedel C, Vasishtan D, Prazak V, Ghanem A, Conzelmann KK, Ruemenapf T

EMDB-0176:
Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
Method: single particle / : Crowe-McAuliffe C, Graf M

EMDB-0177:
Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome
Method: single particle / : Crowe-McAuliffe C, Graf M

PDB-6ha1:
Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
Method: single particle / : Crowe-McAuliffe C, Graf M, Huter P, Abdelshahid M, Novacek J, Wilson DN

PDB-6ha8:
Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome
Method: single particle / : Crowe-McAuliffe C, Graf M, Huter P, Abdelshahid M, Novacek J, Wilson DN

EMDB-3357:
electron density map of murine leukaemia virus envelope glycoprotein tagged in the proline rich region with YFP as reconstructed by subtomogram averaging on viruses produced in DFJ8 cells
Method: subtomogram averaging / : Riedel C, Vasishtan D, Siebert CA, Whittle C, Lehmann MJ, Mothes W, Grunewald K

EMDB-3363:
electron density map of murine leukaemia virus envelope glycoprotein tagged in the proline rich region with YFP as reconstructed by subtomogram averaging on murine leukemia virus virus like particles (3 plasmid system) produced in COS1 cells
Method: subtomogram averaging / : Riedel C, Vasishtan D, Siebert CA, Whittle C, Lehmann MJ, Mothes W, Grunewald K

EMDB-3365:
electron density map of murine leukaemia virus envelope glycoprotein as reconstructed by subtomogram averaging on murine leukemia virus virus like particles (3 plasmid system) produced in COS1 cells
Method: subtomogram averaging / : Riedel C, Vasishtan D, Siebert CA, Whittle C, Lehmann MJ, Mothes W, Grunewald K

EMDB-3373:
electron density map of murine leukaemia virus envelope glycoprotein as reconstructed by subtomogram averaging applying a mask on 1 protomer on murine leukemia virus particles and virus like particles and applying 3fold symmetry to the single protomer afterwards
Method: subtomogram averaging / : Riedel C, Vasishtan D, Siebert CA, Whittle C, Lehmann MJ, Mothes W, Grunewald K

EMDB-4001:
Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex
Method: single particle / : Arenz S, Wilson DN

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more