[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,241 items for (author: xu & b)


EMDB Unreleased entry

EMDB-65314:
EBOV GP/BA2-VHH complex
Method: single particle / : Wang M, Gao Y, Jin T


EMDB Unreleased entry

EMDB-65343:
EBOV GP/1A10-VHH complex
Method: single particle / : Wang M, Gong P, Jin T

PDB-9vt4:
EBOV GP/BA2-VHH complex
Method: single particle / : Wang M, Gao Y, Jin T

PDB-9vts:
EBOV GP/1A10-VHH complex
Method: single particle / : Wang M, Gong P, Jin T

EMDB-69221:
Cryo-EM structure of CDK2 in complex with CRBN/DDB1 and B11
Method: single particle / : Li XZ, Jiang Y

EMDB-69482:
Cryo-EM structure of CDK2 in complex with CRBN/DDB1 and B11 local refinement (Masked on CDK2-CRBN)
Method: single particle / : Li XZ, Jiang Y

EMDB-69484:
Cryo-EM structure of CDK2 in complex with CRBN/DDB1 and B11 local refinement (Masked on CDK2-CRBN-DDB1)
Method: single particle / : Li XZ, Jiang Y

EMDB-69485:
Cryo-EM structure of CDK2 in complex with CRBN/DDB1 and B11 consensus refinement
Method: single particle / : Li XZ, Jiang Y

PDB-23sr:
Cryo-EM structure of CDK2 in complex with CRBN/DDB1 and B11
Method: single particle / : Li XZ, Jiang Y

EMDB-66053:
Cryo-EM structure of human papillomavirus type 45 in complexed with the Fab fragment of A14D2
Method: single particle / : Jiang Y, Sun H, Wang Z, Zheng Q, Li S, Xia N

EMDB-66054:
Cryo-EM structure of human papillomavirus type 45 in complexed with the Fab fragment of A20C10
Method: single particle / : Jiang Y, Sun H, Wang Z, Zheng Q, Li S, Xia N

EMDB-65617:
Structure of the complex of human PD-1 and a PD-1-directed antibody
Method: single particle / : Jiang WB, Xu JL

PDB-9w43:
Structure of the complex of human PD-1 and a PD-1-directed antibody
Method: single particle / : Jiang WB, Xu JL

EMDB-58529:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-N-terminal monoclonal antibody
Method: single particle / : Lau RJ, Wu GHY, Barritt JD, Huemer CB, Matthews S

EMDB-58555:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

EMDB-64397:
Cryo-EM structure of macaque red cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

EMDB-64398:
Cryo-EM structure of macaque green cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

EMDB-64399:
Cryo-EM structure of macaque green cone pigment wild type
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

PDB-9upm:
Cryo-EM structure of macaque red cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

PDB-9upn:
Cryo-EM structure of macaque green cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

PDB-9upo:
Cryo-EM structure of macaque green cone pigment wild type
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

EMDB-58290:
Reduced E.coli aerotaxis receptor
Method: single particle / : Olsthoorn FA, Muok AR, Xu Y, Crane BR

EMDB-58291:
Oxidized E.coli aerotaxis receptor in MH-cap free state
Method: single particle / : Olsthoorn FA, Muok AR, Xu Y, Crane BR

PDB-31cj:
Reduced E.coli aerotaxis receptor
Method: single particle / : Olsthoorn FA, Muok AR, Xu Y, Crane BR

PDB-31ck:
Oxidized E.coli aerotaxis receptor in MH-cap free state
Method: single particle / : Olsthoorn FA, Muok AR, Xu Y, Crane BR

EMDB-41497:
Structure of the H-lobe of human MED12
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41500:
Structure of the kinase and central lobes of human CDK8 kinase module
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-75011:
MP1104-bound Kappa Opioid Receptor in complex with beta-arrestin1
Method: single particle / : Han J, Chen M, Che T

PDB-9zzo:
MP1104-bound Kappa Opioid Receptor in complex with beta-arrestin1
Method: single particle / : Han J, Chen M, Che T

EMDB-52224:
ROCK2 bound with TDI01
Method: single particle / : Aijia W, Shenghai C, Qinghua L, Yan H, Haohao D, Bisen D

PDB-9hjq:
ROCK2 bound with TDI01
Method: single particle / : Aijia W, Shenghai C, Qinghua L, Yan H, Haohao D, Bisen D

EMDB-65360:
Structure of human proteasome ATPase-CP intermediate assembles with 15min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65361:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65362:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

PDB-9vue:
Structure of human proteasome ATPase-CP intermediate assembles with 15min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

PDB-9vuf:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

PDB-9vug:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-54774:
Cryo-EM structure of the Arabidopsis thaliana 60S ribosomal subunit
Method: single particle / : Karki S, Lu X, Paatero AO, Ruonala R, Tranter D, Guryanov S, Rehan S, Hellmann E, Haakonsson A, Butcher SJ, Huiskonen JT, Kajander T, Helariutta Y, Paavilainen VO

EMDB-54789:
Cryo-EM structure of the Arabidopsis thaliana 40S ribosomal subunit
Method: single particle / : Karki S, Lu X, Paatero AO, Ruonala R, Tranter D, Guryanov S, Rehan S, Hellmann E, Haakonsson A, Butcher SJ, Huiskonen JT, Kajander T, Helariutta Y, Paavilainen VO

EMDB-54790:
Cryo-EM structure of the Arabidopsis thaliana 40S ribosomal subunit (Head)
Method: single particle / : Sudeep K, Lu X, Paatero AO, Ruonala R, Tranter D, Guryanov S, Rehan S, Hellmann E, Haakonsson A, Butcher SJ, Huiskonen JT, Kajander T, Helariutta Y, Paavilainen VO

EMDB-55387:
Cryo-EM structure of arabidopsis translating ribosome
Method: single particle / : Karki S, Paavilainen V

EMDB-55388:
Cryo-EM of arabidopsis non-translatin ribosome structure
Method: single particle / : Karki S, Paavilainen V

PDB-9scu:
Cryo-EM structure of the Arabidopsis thaliana 60S ribosomal subunit
Method: single particle / : Karki S, Lu X, Paatero AO, Ruonala R, Tranter D, Guryanov S, Rehan S, Hellmann E, Haakonsson A, Butcher SJ, Huiskonen JT, Kajander T, Helariutta Y, Paavilainen VO

PDB-9sdp:
Cryo-EM structure of the Arabidopsis thaliana 40S ribosomal subunit
Method: single particle / : Karki S, Lu X, Paatero AO, Ruonala R, Tranter D, Guryanov S, Rehan S, Hellmann E, Haakonsson A, Butcher SJ, Huiskonen JT, Kajander T, Helariutta Y, Paavilainen VO

PDB-9sdq:
Cryo-EM structure of the Arabidopsis thaliana 40S ribosomal subunit (Head)
Method: single particle / : Sudeep K, Lu X, Paatero AO, Ruonala R, Tranter D, Guryanov S, Rehan S, Hellmann E, Haakonsson A, Butcher SJ, Huiskonen JT, Kajander T, Helariutta Y, Paavilainen VO

EMDB-73803:
Cryo-EM structure of human Wntless in complex with Wnt5a at 1:1 stoichiometry
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Wang Z, Salic A, Jiang J, Huang P

EMDB-73810:
Cryo-EM structure of human Wntless in its apo state
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73835:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Focused map A
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73836:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Focused map B
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73837:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Consensus map
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more