[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,141 items for (author: xu & b)

EMDB-75011:
MP1104-bound Kappa Opioid Receptor in complex with beta-arrestin1
Method: single particle / : Han J, Chen M, Che T

PDB-9zzo:
MP1104-bound Kappa Opioid Receptor in complex with beta-arrestin1
Method: single particle / : Han J, Chen M, Che T

EMDB-65360:
Structure of human proteasome ATPase-CP intermediate assembles with 15min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65361:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65362:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

PDB-9vue:
Structure of human proteasome ATPase-CP intermediate assembles with 15min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

PDB-9vuf:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

PDB-9vug:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-66192:
Cyro-EM structure of the ACT-451840-bound PfMDR1
Method: single particle / : Zhao Z, Li J, Wang X, Liu X, Wang N, Xu H, Quan C, Kato N, Deng D, Jing X

PDB-9ws4:
Cyro-EM structure of the ACT-451840-bound PfMDR1
Method: single particle / : Zhao Z, Li J, Wang X, Liu X, Wang N, Xu H, Quan C, Wang X, Kato N, Deng D, Jing X

EMDB-65599:
Cryo-EM structure of the human beta2-adrenergic receptor in complex with a novel antagonist
Method: single particle / : Xu T, Liu X

PDB-9w3f:
Cryo-EM structure of the human beta2-adrenergic receptor in complex with a novel antagonist
Method: single particle / : Xu T, Liu X

EMDB-72972:
AM12-340 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yhs:
AM12-340 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-66501:
Glycoprotein of Mengla Virus with MR191 Fab bound
Method: single particle / : Wang L, Zou B, Liu B, Xue L, He J, Xiong X, Xiaoli X

EMDB-66502:
apo state of Mengla Virus Glycoprotein
Method: single particle / : Wang L, Zou B, Liu B, Xue L, He J, Xiong X, Xiaoli X

PDB-9x3j:
Glycoprotein of Mengla Virus with MR191 Fab bound
Method: single particle / : Wang L, Zou B, Liu B, Xue L, He J, Xiong X

PDB-9x3k:
apo state of Mengla Virus Glycoprotein
Method: single particle / : Wang L, Zou B, Liu B, Xue L, He J, Xiong X

EMDB-75818:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 1E11
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Kwong PD, Zhou T

EMDB-75894:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 5H03
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Shapiro L, Kwong PD, Zhou T

PDB-11lt:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 1E11
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Kwong PD, Zhou T

PDB-11ov:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 5H03
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Shapiro L, Kwong PD, Zhou T

EMDB-67871:
DRT4 homohexamer
Method: single particle / : Xiao J, Wang L

EMDB-67946:
DRT4 homohexamer with dGTPaS
Method: single particle / : Xiao J, Wang L

EMDB-67947:
DRT4 homohexamer with dATP
Method: single particle / : Xiao J, Wang L

EMDB-67950:
DRT4 homohexamer with dATP, dGTPaS, SSB, RNA
Method: single particle / : Xiao J, Wang L

EMDB-68056:
DRT4 homohexamer with dATP, SSB
Method: single particle / : Xiao J, Wang L

EMDB-69681:
DRT4 homohexamer with dGTP
Method: single particle / : Wang L, Li J

EMDB-69682:
DRT4 homohexamer with dGTP, GMP
Method: single particle / : Wang L, Li J

EMDB-69683:
DRT4 homohexamer with dGTP, RNA
Method: single particle / : Wang L, Li J

EMDB-69684:
DRT4 homohexamer with dGTP, ssRNA (local refinement)
Method: single particle / : Wang L, Li J

PDB-21ou:
DRT4 homohexamer
Method: single particle / : Xiao J, Wang L

PDB-21ro:
DRT4 homohexamer with dGTPaS
Method: single particle / : Xiao J, Wang L

PDB-21rp:
DRT4 homohexamer with dATP
Method: single particle / : Xiao J, Wang L

PDB-21rs:
DRT4 homohexamer with dATP, dGTPaS, SSB, RNA
Method: single particle / : Xiao J, Wang L

PDB-21wo:
DRT4 homohexamer with dATP, SSB
Method: single particle / : Xiao J, Wang L

PDB-24na:
DRT4 homohexamer with dGTP
Method: single particle / : Wang L, Li J

PDB-24nb:
DRT4 homohexamer with dGTP, GMP
Method: single particle / : Wang L, Li J

PDB-24nc:
DRT4 homohexamer with dGTP, RNA
Method: single particle / : Wang L, Li J

PDB-24nd:
DRT4 homohexamer with dGTP, ssRNA (local refinement)
Method: single particle / : Wang L, Li J

EMDB-64742:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with di-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

PDB-9v2w:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with di-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Li H, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

EMDB-74628:
Cryo-EM structure of KCa2.2/calmodulin channel in complex with SKA111.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

PDB-9zrr:
Cryo-EM structure of KCa2.2/calmodulin channel in complex with SKA111.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

EMDB-72969:
AJ09-21 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72970:
AJ09-83 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72971:
AJ09-110 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72973:
AM12-347 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72985:
AM12-351 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72986:
AM12-352 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more