[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 174 items for (author: wu & sy)

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49628:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-49633:
Global map of six VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-74798:
Cryo-EM local density map of VRC35 Fab bound to N-linked glycans on the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74801:
Cryo-EM map of VRC35 Fab bound to the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74843:
Cryo-EM map of VRC35 Fab bound to the Lassa virus glycoprotein complex
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9npm:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-77605:
Cryo-EM structure of BRD4 BD1 with basic patch 1 bound to acetylated nucleosomes
Method: single particle / : Zhu J, Leith EM, O'Donnell EN, Manzano BP, Wu SY, Chiang CM, Armache JP, Tan S

EMDB-77606:
Cryo-EM structure of BRD4 BD1 bound to acetylated nucleosomes
Method: single particle / : Zhu J, Leith EM, O'Donnell EN, Manzano BP, Wu SY, Chiang CM, Armache JP, Tan S

EMDB-58529:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-N-terminal monoclonal antibody
Method: single particle / : Lau RJ, Wu GHY, Barritt JD, Huemer CB, Matthews S

EMDB-58555:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

EMDB-48131:
Cryo-EM map of 12 VRC35 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48133:
Cryo-EM local map of 4 VRC35 Fabs bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48134:
Cryo-EM local map of 2 VRC35 Fabs bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-65360:
Structure of human proteasome ATPase-CP intermediate assembles with 15min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65361:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65362:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-47885:
Cryo-EM local map of dimerized VRC36 Fabs
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-47893:
Cryo-EM map of 2 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-47895:
Cryo-EM map of 4 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-70607:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9om5:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49964:
Global map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemaglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-66205:
Cryo-EM structure of DAMGO-muOR-Gz-scFv16 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-66207:
Cryo-EM structure of DAMGO-muOR-arrestin-1-Fab30 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-66208:
Cryo-EM structure of endomorphin-1-muOR-Gz-scFv16 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-66209:
Cryo-EM structure of endomorphin-1-muOR-arrestin2-Fab30 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-60393:
Cryo-EM structure of AbCapV filemant bound with 3',3'-cGAMP with extra phospholipid density
Method: single particle / : Kong JP, Li ZX, Ke SY, Xiao YB

EMDB-61417:
Cryo-EM structure of AbCapV dimer, apo form
Method: single particle / : Kong JP, Li ZX, Ke SY, Wu WQ, Xiao YB

EMDB-61419:
Cryo-EM structure of AbCapV tetramer, intermediate form
Method: single particle / : Kong JP, Li ZX, Ke SY, Wu WQ, Xiao YB

EMDB-63031:
LayV-G Head in complex of LayG-1069 and LayG-1133
Method: single particle / : Yan RH, Wu SY

EMDB-71559:
Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Method: single particle / : Wasilko DJ, Wu H

EMDB-52832:
Helical reconstruction of a D. melanogaster N-clamp-decorated microtubule
Method: helical / : Wuertz M, Vermeulen BJA, Tonon G, Pfeffer S

EMDB-54160:
D. melanogaster augmin TII N-clamp (GST-fusion) bound to a microtubule
Method: single particle / : Wuertz M, Vermeulen BJA, Tonon G, Pfeffer S

EMDB-54161:
D. melanogaster Augmin TII N-clamp (GST-fusion) bound to a microtubule, well-defined subset of particles
Method: single particle / : Wuertz M, Vermeulen BJA, Tonon G, Pfeffer S

EMDB-54174:
D. melanogaster Augmin TII N-clamp bound to a microtubule
Method: single particle / : Wuertz M, Vermeulen BJA, Tonon G, Pfeffer S

PDB-9rpd:
D. melanogaster Augmin TII N-clamp (GST-fusion) bound to a microtubule, well-defined subset of particles
Method: single particle / : Wuertz M, Vermeulen BJA, Tonon G, Pfeffer S

EMDB-52569:
MAP6d1 assembles protofilaments in the microtubule lumen
Method: subtomogram averaging / : GOPAL D, Wu J, Delaroche J, Bosc C, De Andrade M, Denarier E, Effantin G, Andrieux A, Gory-Faure S, Serre L, Arnal I

EMDB-52572:
MAP6d1 assembles protofilaments in the lumen of microtubule doublets
Method: subtomogram averaging / : Gopal D, Serre L, Arnal I

EMDB-52574:
MAP6d1 assembles microtubule doublets
Method: subtomogram averaging / : Gopal D, Serre L, Arnal I

EMDB-52575:
MAP6d1 assembles microtubule doublets
Method: subtomogram averaging / : Gopal D, Serre L, Arnal I

EMDB-52623:
MAP6d1 assembles microtubule doublets
Method: subtomogram averaging / : Gopal D, Serre L, Arnal I

EMDB-53452:
luminal protofilaments after masked refinement in a singlet microtubule
Method: subtomogram averaging / : GOPAL D, Wu J, Delaroche J, Bosc C, De Andrade M, Denarier E, Effantin G, Andrieux A, Gory-Faure S, Serre L, Arnal I

EMDB-53454:
Singlet microtubule after masked refinement.
Method: subtomogram averaging / : GOPAL D, Wu J, Delaroche J, Bosc C, De Andrade M, Denarier E, Effantin G, Andrieux A, Gory-Faure S, Serre L, Arnal I

EMDB-53457:
Combined map of singlet microtubule with 2 luminal protofilament
Method: subtomogram averaging / : GOPAL D, Wu J, Delaroche J, Bosc C, De Andrade M, Denarier E, Effantin G, Andrieux A, Gory-Faure S, Serre L, Arnal I

EMDB-48575:
G002-293-0536 Fab in complex with 001428_T278M_L14 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48591:
G002-480-0546 Fab in complex with V703-0537_T278M_L14 SOSIP and BG18 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9msd:
G002-293-0536 Fab in complex with 001428_T278M_L14 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9msy:
G002-480-0546 Fab in complex with V703-0537_T278M_L14 SOSIP and BG18 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more