[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 344 items for (author: wright & d)

EMDB-53311:
Cryo-EM map of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53341:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-55145:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qqq:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qsj:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9sro:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-74020:
Structure of E. Coli DNA protection during starvation protein (DPS) from single particle cryoEM
Method: single particle / : Sibert BS, Parrell D, Yang JE, Kumar A, Larson MR, Montemayor EJ, Maindola P, Cai K, Wright ER

PDB-9zc2:
Structure of E. Coli DNA protection during starvation protein (DPS) from single particle cryoEM
Method: single particle / : Montemayor EJ, Sibert BS, Parrell D, Yang JE, Larson MR, Gaines M, Kumar A, Maindola P, Cai K, Woods M, Wright ER

EMDB-52890:
NUQM-free state of Pichia pastoris mitochondrial complex I reconstituted into proteoliposomes
Method: single particle / : Grba DN, Hirst J

EMDB-52891:
NUQM-bound state of Pichia pastoris mitochondrial complex I reconstituted into proteoliposomes
Method: single particle / : Grba DN, Hirst J

EMDB-52892:
Flavoprotein (NUHM and NUBM)-free state of Pichia pastoris mitochondrial complex I reconstituted into proteoliposomes
Method: single particle / : Grba DN, Hirst J

EMDB-52893:
Flavoprotein (NUHM and NUBM)-containing state of Pichia pastoris mitochondrial complex I reconstituted into proteoliposomes
Method: single particle / : Grba DN, Hirst J

EMDB-70618:
Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 bound with butyrolactol A in the E2P state
Method: single particle / : Duan HD, Li H

PDB-9omv:
Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 bound with butyrolactol A in the E2P state
Method: single particle / : Duan HD, Li H

EMDB-52875:
Open state without NUQM and without flavoprotein (classification state 4) of Pichia pastoris mitochondrial complex I in cMSP26 nanodiscs
Method: single particle / : Grba DN, Hirst J

EMDB-52876:
Open state without NUQM and with flavoprotein (classification state 3) of Pichia pastoris mitochondrial complex I in cMSP26 nanodiscs
Method: single particle / : Grba DN, Hirst J

EMDB-52877:
Closed state with NUQM and without flavoprotein (classification state 2) of Pichia pastoris mitochondrial complex I in cMSP26 nanodiscs
Method: single particle / : Grba DN, Hirst J

EMDB-52878:
Closed state with NUQM and with flavoprotein (classification state 1) of Pichia pastoris mitochondrial complex I in cMSP26 nanodiscs
Method: single particle / : Grba DN, Hirst J

PDB-9iho:
Open state without NUQM and without flavoprotein (classification state 4) of Pichia pastoris mitochondrial complex I in cMSP26 nanodiscs
Method: single particle / : Grba DN, Hirst J

PDB-9ihp:
Open state without NUQM and with flavoprotein (classification state 3) of Pichia pastoris mitochondrial complex I in cMSP26 nanodiscs
Method: single particle / : Grba DN, Hirst J

PDB-9ihq:
Closed state with NUQM and without flavoprotein (classification state 2) of Pichia pastoris mitochondrial complex I in cMSP26 nanodiscs
Method: single particle / : Grba DN, Hirst J

PDB-9ihr:
Closed state with NUQM and with flavoprotein (classification state 1) of Pichia pastoris mitochondrial complex I in cMSP26 nanodiscs
Method: single particle / : Grba DN, Hirst J

EMDB-51633:
Cryo-EM structure of Halothiobacillus neapolitanus alpha-carboxysome T=4 mini-shell containing CTD truncated mutant of CsoSCA
Method: single particle / : Ng PC, Basle A, Liu LN, Marles-Wright J

EMDB-51641:
Cryo-EM structure of alpha-carboxysome T=4 mini-shell containing CTD only mutant of CsoSCA
Method: single particle / : Ng PC, Basle A, Marles-Wright J, Liu L

PDB-9gvc:
Cryo-EM structure of Halothiobacillus neapolitanus alpha-carboxysome T=4 mini-shell containing CTD truncated mutant of CsoSCA
Method: single particle / : Ng PC, Basle A, Liu LN, Marles-Wright J

PDB-9gw1:
Cryo-EM structure of alpha-carboxysome T=4 mini-shell containing CTD only mutant of CsoSCA
Method: single particle / : Ng PC, Basle A, Marles-Wright J, Liu L

PDB-9ppv:
In situ MicroED structure of human eosinophil major basic protein-1
Method: electron crystallography / : Yang JE, Bingman CA, Mitchell J, Mosher D, Wright ER

PDB-9psk:
In situ MicroED structure of IL-33 activated human eosinophil major basic protein-1
Method: electron crystallography / : Yang JE, Bingman CA, Mitchell J, Mosher D, Wright ER

PDB-9pse:
In situ MicroED structure of IL-5 activated human eosinophil major basic protein-1
Method: electron crystallography / : Yang JE, Bingman CA, Mitchell J, Mosher D, Wright ER

EMDB-51067:
Beta carbonic anhydrase CsoSCA from the Halothiobacillus neapolitanus alpha-carboxysome
Method: single particle / : Ng PC, Marles-Wright J, Basle A, Liu L

PDB-9g4t:
Beta carbonic anhydrase CsoSCA from the Halothiobacillus neapolitanus alpha-carboxysome
Method: single particle / : Ng PC, Marles-Wright J, Basle A, Liu L

EMDB-70093:
Cryo-EM structure of in-vitro alpha-synuclein fibril bound with Exemplar-6 PET-radioligand
Method: helical / : Sanchez JC, Perez RM, Borcik CG, Guarino DS, Dhavala DD, Baumgardt JK, Shaffer KD, Kotzbauer PT, Mach RH, Rienstra CM, Petersson EJ, Wright ER

PDB-9o4b:
Cryo-EM structure of in-vitro alpha-synuclein fibril bound with Exemplar-6 PET-radioligand
Method: helical / : Sanchez JC, Perez RM, Borcik CG, Guarino DS, Dhavala DD, Baumgardt JK, Shaffer KD, Kotzbauer PT, Mach RH, Rienstra CM, Petersson EJ, Wright ER

EMDB-49656:
Rabbit RB142 polyclonal Fab in complex with HIV-1 1086C NFL Env trimer
Method: single particle / : Lin RN, Torres JL, Ozorowski G, Ward AB

EMDB-52431:
CryoEM structure of cyclised H-pilus
Method: helical / : Ishimoto N, Beis K

PDB-9hvc:
CryoEM structure of cyclised H-pilus
Method: helical / : Ishimoto N, Beis K

EMDB-48373:
Xenorhabdus nematophilus XptA2 RBD C Chimera
Method: single particle / : Aller SG, Martin CL

PDB-9mli:
Xenorhabdus nematophilus XptA2 RBD C Chimera
Method: single particle / : Aller SG, Martin CL

EMDB-47339:
Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 in the E1 state
Method: single particle / : Duan HD, Li H

PDB-9dzv:
Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 in the E1 state
Method: single particle / : Duan HD, Li H

EMDB-48478:
Cryo-EM of F-pilus
Method: helical / : Sonani RR, Francetic O, Lejeune M, Izadi-Pruneyre N, Egelman EH

PDB-9moq:
Cryo-EM of F-pilus
Method: helical / : Sonani RR, Francetic O, Lejeune M, Izadi-Pruneyre N, Egelman EH

EMDB-48371:
Xenorhabdus nematophilus XptA2 State 2, 1181insYWK1183, D1182T mutant
Method: single particle / : Aller SG, Martin CL

EMDB-48372:
Xenorhabdus nematophilus XptA2, wild type State 2
Method: single particle / : Aller SG, Martin CL

PDB-9mlg:
Xenorhabdus nematophilus XptA2 State 2, 1181insYWK1183, D1182T mutant
Method: single particle / : Aller SG, Martin CL

PDB-9mlh:
Xenorhabdus nematophilus XptA2, wild type State 2
Method: single particle / : Aller SG, Martin CL

EMDB-44590:
SARS-CoV-2 endoribonuclease Nsp15 bound to dsRNA with 1 nucleotide bulge
Method: single particle / : Wright ZM, Butay KJ, Krahn JM, Borgnia MJ, Stanley RE

PDB-9bih:
SARS-CoV-2 endoribonuclease Nsp15 bound to dsRNA with 1 nucleotide bulge
Method: single particle / : Wright ZM, Butay KJ, Krahn JM, Borgnia MJ, Stanley RE

EMDB-45167:
Cryo-EM structure of E. coli AmpG
Method: single particle / : Sverak H, Worrall LJ, Strynadka NCJ

PDB-9c3f:
Cryo-EM structure of E. coli AmpG
Method: single particle / : Sverak H, Worrall LJ, Strynadka NCJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more