[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 917 items for (author: wang & aj)

EMDB-72942:
Flagella filament structure in H. pylori composed of flagellin FlaA
Method: single particle / : Kumar R, Yu H, Tachiyama S, Liu J

EMDB-72948:
Structure of flagellin FlaB filament in H. pylori
Method: single particle / : Kumar R, Yu H, Tachiyama S, Liu J

PDB-9ygu:
Flagella filament structure in H. pylori composed of flagellin FlaA
Method: single particle / : Kumar R, Yu H, Tachiyama S, Liu J

PDB-9yh1:
Structure of flagellin FlaB filament in H. pylori
Method: single particle / : Kumar R, Yu H, Tachiyama S, Liu J

EMDB-53311:
Cryo-EM map of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53341:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-55145:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qqq:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qsj:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9sro:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

PDB-9qtj:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

EMDB-71739:
Legionella Dot/Icm T4SS
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72186:
Focused refinement map of the periplasmic part of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72187:
Focused refinement map of the cytoplasmic region of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-64077:
Cryo-EM structure of SARS-CoV-2 KP.2 spike RBD in complex with ACE2
Method: single particle / : Jin XH, Sun L

EMDB-64078:
Cryo-EM structure of SARS-CoV-2 KP.2 spike in complex with ACE2
Method: single particle / : Jin XH, Sun L

PDB-9ue6:
Cryo-EM structure of SARS-CoV-2 KP.2 spike RBD in complex with ACE2
Method: single particle / : Jin XH, Sun L

PDB-9ue7:
Cryo-EM structure of SARS-CoV-2 KP.2 spike in complex with ACE2
Method: single particle / : Jin XH, Sun L

EMDB-71899:
Structure of V30V4 in complex with SARS-CoV-2 spike
Method: single particle / : Wang YJ, Kibria G, Wesemann D, Chen B

PDB-9pw4:
Structure of V30V4 in complex with SARS-CoV-2 spike
Method: single particle / : Wang YJ, Kibria G, Wesemann D, Chen B

EMDB-71900:
The local refinement map of Structure of V30V4 in complex with SARS-CoV-2 spike
Method: single particle / : Wang YJ, Kibria G, Wesemann D, Chen B

EMDB-71270:
The cryo-EM map of Retron_Eco8 complex in Apo state
Method: single particle / : Yu C, Wang C, Fu T

EMDB-71271:
The structure of Retron Eco8 in Apo state
Method: single particle / : Yu C, Wang C, Fu T

EMDB-71272:
The structure of Retron Eco8-SSB complex
Method: single particle / : Yu C, Wang C, Fu T

PDB-9p4j:
The structure of Retron Eco8 in Apo state
Method: single particle / : Yu C, Wang C, Fu T

PDB-9p4k:
The structure of Retron Eco8-SSB complex
Method: single particle / : Yu C, Wang C, Fu T

EMDB-70613:
Cryo-EM structure of rhesus antibody V033-Int1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9omg:
Cryo-EM structure of rhesus antibody V033-a.I1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-47221:
CryoEM structure of Syn7942 RNAP-SigA holoenzyme
Method: single particle / : Fang M, Gu Y, Matyszewski M, Leanca M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

EMDB-47222:
Cryo-EM structure of RpaA bound to PkaiBC DNA and the CTD of the alpha subunit of RNAP from the cyanobacterium Synechococcus elongatus
Method: single particle / : Fang M, Gu Y, Matyszewski M, Leanca M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

EMDB-47223:
CryoEM structure of RpaA bound to PkaiBC DNA and Syn7942 RNAP-SigA holoenzyme
Method: single particle / : Fang M, Gu Y, Matyszewski M, Leanca M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

PDB-9dvs:
CryoEM structure of Syn7942 RNAP-SigA holoenzyme
Method: single particle / : Fang M, Gu Y, Matyszewski M, Leanca M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

PDB-9dvt:
Cryo-EM structure of RpaA bound to PkaiBC DNA and the CTD of the alpha subunit of RNAP from the cyanobacterium Synechococcus elongatus
Method: single particle / : Fang M, Gu Y, Matyszewski M, Leanca M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

PDB-9dvu:
CryoEM structure of RpaA bound to PkaiBC DNA and Syn7942 RNAP-SigA holoenzyme
Method: single particle / : Fang M, Gu Y, Matyszewski M, Leanca M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

EMDB-39666:
Kinesin-14 with AlF3 bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Hagio H, Endow SA, Nitta R

PDB-8yy4:
Kinesin-14 with AlF3 bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Hagio H, Endow SA, Nitta R

EMDB-39664:
Kinesin-14 in nucleotide-free state bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39665:
Kinesin-14 in nucleotide-free state bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39667:
Kinesin-14 with AlF3 bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39668:
Kinesin-14 with AMPPNP bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39669:
Kinesin-14 with AMPPNP bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

PDB-8yy2:
Kinesin-14 in nucleotide-free state bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

PDB-8yy3:
Kinesin-14 in nucleotide-free state bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

PDB-8yy5:
Kinesin-14 with AlF3 bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-49125:
In situ structure of the sheathed FlaD flagellar filament in Vibrio cholerae
Method: single particle / : Wangbiao G, Jun L

EMDB-49126:
In situ unsheathed flagellar filament of Vibrio cholerae resolved with helical reconstruction.
Method: helical / : Wangbiao G, Jun L

EMDB-49128:
In situ sheathed FlaA flagellar filament of Vibrio cholerae
Method: single particle / : Wangbiao G, Jun L

EMDB-49129:
In situ sheathed flagellar filament of Vibrio cholerae resolved with helical reconstruction.
Method: helical / : Wangbiao G, Jun L

EMDB-49131:
In situ sheathed flagellar FlaC filament in Vibrio cholerae.
Method: single particle / : Wangbiao G, Rajeev K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more