[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 72 items for (author: walter & ts)

EMDB-70791:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

PDB-9os2:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

EMDB-72178:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER, Lander GC

PDB-9q33:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER

EMDB-48575:
G002-293-0536 Fab in complex with 001428_T278M_L14 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48591:
G002-480-0546 Fab in complex with V703-0537_T278M_L14 SOSIP and BG18 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9msd:
G002-293-0536 Fab in complex with 001428_T278M_L14 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9msy:
G002-480-0546 Fab in complex with V703-0537_T278M_L14 SOSIP and BG18 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-41940:
Human RADX tetramer bound to ssDNA
Method: single particle / : Balakrishnan S, Chazin WJ

PDB-8u61:
Human RADX tetramer bound to ssDNA
Method: single particle / : Balakrishnan S, Chazin WJ

EMDB-41617:
CryoEM structure of PI3Kalpha
Method: single particle / : Valverde R, Shi H, Holliday M, Sun M

PDB-8tu6:
CryoEM structure of PI3Kalpha
Method: single particle / : Valverde R, Shi H, Holliday M

EMDB-41939:
human RADX trimer bound to ssDNA
Method: single particle / : Balakrishnan S, Chazin WJ

EMDB-42156:
RADX trimer locally refined map 1
Method: single particle / : Balakrishnan S, Chazin WJ

EMDB-42157:
RADX trimer locally refined map 2
Method: single particle / : Balakrishnan S, Chazin WJ

EMDB-42162:
RADX trimer consensus map
Method: single particle / : Balakrishnan S, Chazin WJ

PDB-8u5y:
human RADX trimer bound to ssDNA
Method: single particle / : Balakrishnan S, Chazin WJ

EMDB-26160:
Structure of human serotonin transporter bound to small molecule '8090 in lipid nanodisc and NaCl
Method: single particle / : Singh I, Seth A

PDB-7txt:
Structure of human serotonin transporter bound to small molecule '8090 in lipid nanodisc and NaCl
Method: single particle / : Singh I, Seth A, Billesboelle CB, Braz J, Rodriguiz RM, Roy K, Bekele B, Craik V, Huang XP, Boytsov D, Lak P, O'Donnell H, Sandtner W, Roth BL, Basbaum AI, Wetsel WC, Manglik A, Shoichet BK, Rudnick G

EMDB-25570:
Cryo-EM structure of Rifamycin bound to E. coli RNAP and rrnBP1 promoter complex
Method: single particle / : Shin Y, Murakami KS

EMDB-25571:
Cryo-EM structure of 27a bound to E. coli RNAP and rrnBP1 promoter complex
Method: single particle / : Shin Y, Murakami KS

PDB-7szj:
Cryo-EM structure of Rifamycin bound to E. coli RNAP and rrnBP1 promoter complex
Method: single particle / : Shin Y, Murakami KS

PDB-7szk:
Cryo-EM structure of 27a bound to E. coli RNAP and rrnBP1 promoter complex
Method: single particle / : Shin Y, Murakami KS

EMDB-13109:
Bacteriophage PRD1 in complex with chlorpromazine (CPZ)
Method: single particle / : Duyvesteyn HME, Santos-Perez I, Peccati F, Martinez-Castillo A, Jimenez-Oses G, Oksanen HM, Stuart DI, Abrescia NGA

EMDB-24334:
cryo-EM of human Gastric inhibitory polypeptide receptor GIPR bound to GIP
Method: single particle / : Sun B, Kobilka BK

EMDB-24401:
cryo-EM structure of human Gastric inhibitory polypeptide receptor GIPR bound to tirzepatide
Method: single particle / : Sun B, Kobilka BK, Sloop KW, Feng D, Kobilka TS

EMDB-24445:
cryo-EM of human Glucagon-like peptide 1 receptor GLP-1R in apo form
Method: single particle / : Sun B, Kobilka BK

EMDB-24453:
cryo-EM of human Glucagon-like peptide 1 receptor GLP-1R bound to tirzepatide
Method: single particle / : Sun B, Kobilka BK, Sloop KW, Feng D, Kobilka TS

PDB-7ra3:
cryo-EM of human Gastric inhibitory polypeptide receptor GIPR bound to GIP
Method: single particle / : Sun B, Kobilka BK, Sloop KW, Feng D, Kobilka TS

PDB-7rbt:
cryo-EM structure of human Gastric inhibitory polypeptide receptor GIPR bound to tirzepatide
Method: single particle / : Sun B, Kobilka BK, Sloop KW, Feng D, Kobilka TS

PDB-7rg9:
cryo-EM of human Glucagon-like peptide 1 receptor GLP-1R in apo form
Method: single particle / : Sun B, Kobilka BK, Sloop KW, Feng D, Kobilka TS

PDB-7rgp:
cryo-EM of human Glucagon-like peptide 1 receptor GLP-1R bound to tirzepatide
Method: single particle / : Sun B, Kobilka BK, Sloop KW, Feng D, Kobilka TS

PDB-7l7g:
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B from Homo sapiens (updated model of PDB ID: 6CAJ)
Method: single particle / : Tsai JC, Miller-Vedam LE, Anand A, Jaishankar P, Nguyen HC, Wang L, Renslo AR, Frost A, Walter P

EMDB-12274:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12275:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-88 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12276:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-150 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12277:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12278:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-316 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12279:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-384 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12280:
EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-253H55L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12281:
EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-253H55L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y

EMDB-12282:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-253H165L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12283:
EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-159
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12284:
EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-159
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-22283:
cryo-EM of human GLP-1R bound to non-peptide agonist LY3502970
Method: single particle / : Sun B, Kobilka BK

EMDB-21147:
Cryo-EM structure of the Glucagon-like peptide-1 receptor in complex with G protein, GLP-1 peptide and a positive allosteric modulator
Method: single particle / : Sun B, Feng D

PDB-6vcb:
Cryo-EM structure of the Glucagon-like peptide-1 receptor in complex with G protein, GLP-1 peptide and a positive allosteric modulator
Method: single particle / : Sun B, Feng D, Bueno A, Kobilka B, Sloop K

EMDB-0649:
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to translation initiation factor 2 from Homo sapiens
Method: single particle / : Nguyen H, Kenner L

EMDB-0651:
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to eukaryotic translation initiation factor 2 from Homo sapiens
Method: single particle / : Nguyen HC, Kenner LR

EMDB-0664:
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to eukaryotic translation initiation factor 2 from Homo sapiens
Method: single particle / : Nguyen HC, Kenner LR

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more