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Showing 1 - 50 of 776 items for (author: tani & k)

EMDB-72245:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72246:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72247:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72249:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72252:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72253:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72254:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72259:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72261:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72262:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72263:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72264:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72270:
Rad55-Rad57-SHU homologous recombination complex. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-77477:
apo-bmCCAN consensus refinement
Method: single particle / : Yatskevich S, Ciferri C

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-9y61:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

EMDB-67574:
Mfa1 type V pilus from P.gingivalis
Method: single particle / : Shibata S, Matsunami H, Wolf M

PDB-21co:
Mfa1 type V pilus from P.gingivalis
Method: single particle / : Shibata S, Matsunami H, Wolf M

EMDB-70561:
Structure of the Bombyx mori bmCENP-HIKM-LN-T-OP complex without the CS module
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70567:
Bombyx mori bmCENP-LN-HIKM sub-complex structure
Method: single particle / : Yatskevich S, Ciferri C

PDB-9oke:
Structure of the Bombyx mori bmCENP-HIKM-LN-T-OP complex without the CS module
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okk:
Bombyx mori bmCENP-LN-HIKM sub-complex structure
Method: single particle / : Yatskevich S, Ciferri C

EMDB-66911:
Structure of dodecameric Apo TpkB from Thermus thermophilus
Method: single particle / : Torri M, Kanno R, Mizoguchi A, Humbel B, Tani K, Masui R

EMDB-66912:
Structure of hexameric TpkB bound to AMP-PNP from Thermus thermophilus
Method: single particle / : Torri M, Kanno R, Mizoguchi A, Humbel B, Tani K, Masui R

EMDB-66913:
Structure of dodecameric TpkB bound to AMP-PNP from Thermus thermophilus
Method: single particle / : Torri M, Kanno R, Mizoguchi A, Humbel B, Tani K, Masui R

PDB-9xip:
Structure of dodecameric Apo TpkB from Thermus thermophilus
Method: single particle / : Torri M, Kanno R, Mizoguchi A, Humbel B, Tani K, Masui R

PDB-9xiq:
Structure of hexameric TpkB bound to AMP-PNP from Thermus thermophilus
Method: single particle / : Torri M, Kanno R, Mizoguchi A, Humbel B, Tani K, Masui R

PDB-9xir:
Structure of dodecameric TpkB bound to AMP-PNP from Thermus thermophilus
Method: single particle / : Torri M, Kanno R, Mizoguchi A, Humbel B, Tani K, Masui R

EMDB-65634:
Cryo-EM structure of Enterovirus-D68 MO strain virus-like particle
Method: single particle / : Senpuku K, Hirose M, Ito T, Kato T, Yshioka Y

PDB-9w4i:
Cryo-EM structure of Enterovirus-D68 MO strain virus-like particle
Method: single particle / : Senpuku K, Hirose M, Ito T, Kato T, Yshioka Y

EMDB-75004:
One Lmod2 and incoming actin at the pointed end of F-actin
Method: single particle / : Brotzman SB, Palmer NJ, Dominguez R

PDB-9zzk:
One Lmod2 and incoming actin at the pointed end of F-actin
Method: single particle / : Brotzman SB, Palmer NJ, Dominguez R

EMDB-70558:
Structure of the dimeric Bombyx mori CCAN bound to DNA
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70560:
Structure of the monomeric Bombyx mori CCAN bound to linear DNA
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70568:
Structure of the Bombyx mori apo-bmCCAN
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okb:
Structure of the dimeric Bombyx mori CCAN bound to DNA
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okd:
Structure of the monomeric Bombyx mori CCAN bound to linear DNA
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okl:
Structure of the Bombyx mori apo-bmCCAN
Method: single particle / : Yatskevich S, Ciferri C

EMDB-64974:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT Consensus map
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-64975:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT_TM_Local Refinment
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-64976:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT_SD_Local refinement
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-67739:
Alcohol Oxidase Mod1p from Ogataea methanolica
Method: single particle / : Cai HL, Shimada A, Hamaguchi T, Mizoguchi A, Yonekura K, Shimada M, Ebihara A, Tani K, Nakagawa T

EMDB-67740:
Alcohol Oxidase Mod2p from Ogataea methanolica
Method: single particle / : Cai HL, Shimada A, Hamaguchi T, Mizoguchi A, Yonekura K, Shimada M, Ebihara A, Tani K, Nakagawa T

PDB-21ju:
Alcohol Oxidase Mod1p from Ogataea methanolica
Method: single particle / : Cai HL, Shimada A, Hamaguchi T, Mizoguchi A, Yonekura K, Shimada M, Ebihara A, Tani K, Nakagawa T

PDB-21jv:
Alcohol Oxidase Mod2p from Ogataea methanolica
Method: single particle / : Cai HL, Shimada A, Hamaguchi T, Mizoguchi A, Yonekura K, Shimada M, Ebihara A, Tani K, Nakagawa T

EMDB-72367:
Teichoic acid flippase TacF from Streptococcus pneumoniae
Method: single particle / : Cebrero G, Chidananda HA, Denereaz JL, Cester E, Mathew AT, Bhowmik DR, Capitani M, Reymond JL, Kannan N, Veening JW, Mehdipour AR, Perez C

PDB-9xzn:
Teichoic acid flippase TacF from Streptococcus pneumoniae
Method: single particle / : Cebrero G, Chidananda HA, Denereaz JL, Cester E, Mathew AT, Bhowmik DR, Capitani M, Reymond JL, Kannan N, Veening JW, Mehdipour AR, Perez C

EMDB-64322:
Giraffe KIF5A motor domain in nucleotide free state bound to microtubule
Method: helical / : Imasaki T, Yamagishi Y, Shigematsu H, Nitta R

EMDB-64377:
Glycogen phosphorylase tetramer from E. coli
Method: single particle / : Takai M, Fukuda Y, Inoue T

EMDB-64393:
Glycogen phosphorylase dimer from E. coli in complex with AMP.
Method: single particle / : Takai M, Fukuda Y, Inoue T

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