[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 11,671 items for (author: si & z)

EMDB-70159:
Cryo-EM structure of SHOC2-KRAS-PP1CA (SKP) complex
Method: single particle / : Finci LI, Bonsor DA, Simanshu DK

PDB-9o65:
Cryo-EM structure of SHOC2-KRAS-PP1CA (SKP) complex
Method: single particle / : Finci LI, Bonsor DA, Simanshu DK

EMDB-70277:
The structure of TdfH from Neisseria gonorrhoeae
Method: single particle / : Bera A, Noinaj N

PDB-9oaa:
The structure of TdfH from Neisseria gonorrhoeae
Method: single particle / : Bera A, Noinaj N

EMDB-47570:
DH726-1 Fab bound to hemagglutinin from influenza A/Solomon Islands/3/2006
Method: single particle / : Finney J, Harrison SC, Walsh Jr RM, Kelsoe G

EMDB-63082:
Cryo-EM structure of ToMMV
Method: helical / : Chatterjee A, Venkatasubramanian A, Mazumdar P, Singh SK, Roy A, Das U, Mandal B, Datta PP

EMDB-46785:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46786:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46787:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46789:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), tail focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46791:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), composite map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

PDB-9dei:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1)
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-56129:
Octameric C. elegans BORC, containing BORCS5, BORCS6, BORCS7, BORCS8, KXD1 and the shared BORC and BLoC-1 subunits, BLOC1S1, BLOC1S2 and Snapin
Method: single particle / : Amann SJ, de Araujo MEG, Grishkovskaya I, Huber LA, Haselbach D

PDB-9ti4:
High resolution Cryo-EM structure of human complex I in mitochondria
Method: single particle / : Nguyen MD, Singh V, Rorbach J

EMDB-72221:
AK01 integrase inhibitor bound to Wild-type HIV-1 intasome
Method: single particle / : Jing T, Li M, Lyumkis D

EMDB-72222:
XZ440 integrase inhibitor bound to Wild-type HIV-1 intasome
Method: single particle / : Jing T, Li M, Lyumkis D

PDB-9q50:
AK01 integrase inhibitor bound to Wild-type HIV-1 intasome
Method: single particle / : Jing T, Li M, Lyumkis D

PDB-9q57:
XZ440 integrase inhibitor bound to Wild-type HIV-1 intasome
Method: single particle / : Jing T, Li M, Lyumkis D

EMDB-53901:
Icosahedral reconstruction of Semliki Forest virus in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53902:
Semliki Forest virus trimer 1 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53903:
Semliki Forest virus trimer 2 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53904:
Composite density map of Semliki Forest virus in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53905:
Icosahedral reconstruction of Semliki Forest virus in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53906:
Semliki Forest virus trimer 1 in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53907:
Semliki Forest virus trimer 2 in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-53908:
Composite density map of Semliki Forest virus in complex with ApoER2 ligand-binding domain
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

PDB-9rbq:
Semliki Forest virus trimer 1 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

PDB-9rbr:
Semliki Forest virus trimer 2 in complex with ApoER2 LA5
Method: single particle / : Song X, Du B, Yang D, Wang J, Huiskonen JT

EMDB-55905:
Cryo-EM structure of Z-DNA binding antibody Z-D11 in complex with left-handed Z-DNA
Method: single particle / : Chin DHR, Luo YB, Luo D

EMDB-55906:
Cryo-EM structure of Z22 mAb in complex with left-handed Z-DNA (dimer of trimer)
Method: single particle / : Chin DHR, Luo YB, Luo D

EMDB-55912:
Cryo-EM structure of Z22 antibody in complex with left-handed Z-DNA (trimer)
Method: single particle / : Chin DHR, Luo YB, Luo D

PDB-9tgn:
Cryo-EM structure of Z-DNA binding antibody Z-D11 in complex with left-handed Z-DNA
Method: single particle / : Chin DHR, Luo YB, Luo D

PDB-9tgo:
Cryo-EM structure of Z22 mAb in complex with left-handed Z-DNA (dimer of trimer)
Method: single particle / : Chin DHR, Luo YB, Luo D

PDB-9tgw:
Cryo-EM structure of Z22 antibody in complex with left-handed Z-DNA (trimer)
Method: single particle / : Chin DHR, Luo YB, Luo D

EMDB-72178:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER, Lander GC

PDB-9q33:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER

EMDB-52419:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Open Tetramer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52420:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Closed1 tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52421:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Closed2 tetramer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52422:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Empty monomer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52423:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. cofactor-monomer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52424:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Cofactor/ligand-monomer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52425:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. cofactor/ligand-monomer in Open tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52426:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. cofactor/ligand-monomer in Closed1 tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52427:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. cofactor/ligand-monomer in Closed2 tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52428:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Total-monomer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52429:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Closed2 tetramer with cofactor/ligand-monomer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

PDB-9hux:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Open Tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

PDB-9huy:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Closed1 tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

PDB-9huz:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Closed2 tetramer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more