[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 105 items for (author: shoichet & b)

EMDB-44865:
Local refinement of DRD2 bound to LSD in complex with a mini-GoA and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Kim K, Gumpper RH, Fay JF, Roth BL

EMDB-44866:
Global reconstruction of DRD2 bound to LSD in complex with a mini-GoA and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Kim K, Gumpper RH, Fay JF, Roth BL

PDB-9bs9:
Local refinement of DRD2 bound to LSD in complex with a mini-GoA and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Kim K, Gumpper RH, Fay JF, Roth BL

PDB-9bsb:
Global reconstruction of DRD2 bound to LSD in complex with a mini-GoA and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Kim K, Gumpper RH, Fay JF, Roth BL

EMDB-71783:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

PDB-9pqd:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

EMDB-71718:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

PDB-9pln:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-71719:
Structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

PDB-9plo:
Structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-51434:
Befiradol-bound serotonin 5-HT1A receptor - Gs Protein Complex
Method: single particle / : Schneider J, Gmeiner P, Boettcher B, Rasmussen T

PDB-9gl2:
Befiradol-bound serotonin 5-HT1A receptor - Gs Protein Complex
Method: single particle / : Schneider J, Gmeiner P, Boettcher B, Rasmussen T

EMDB-44945:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking local map
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-44946:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking, local refinement of heterotrimer
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-44961:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking global map
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-46828:
Cannabinoid receptor 1-Gi complex with novel ligand
Method: single particle / : Tummino TA, Iliopoulos-Tsoutsouvas C, Braz JM, O'Brien ES, Krishna Kumar K, Makriyannis M, Basbaum AI, Shoichet BK

EMDB-47992:
Cannabinoid receptor 1-Gi complex with novel ligand
Method: single particle / : Tummino TA, Iliopoulos-Tsoutsouvas C, Braz JM, O'Brien ES, Krishna Kumar K, Makriyannis M, Basbaum AI, Shoichet BK

PDB-9dgi:
Cannabinoid receptor 1-Gi complex with novel ligand
Method: single particle / : Tummino TA, Iliopoulos-Tsoutsouvas C, Braz JM, O'Brien ES, Krishna Kumar K, Makriyannis M, Basbaum AI, Shoichet BK

PDB-9ego:
Cannabinoid receptor 1-Gi complex with novel ligand
Method: single particle / : Tummino TA, Iliopoulos-Tsoutsouvas C, Braz JM, O'Brien ES, Krishna Kumar K, Makriyannis M, Basbaum AI, Shoichet BK

EMDB-48524:
Inactive Mu-Opioid Receptor with Nb6M, NabFab, and isoquinuclidine compound #33
Method: single particle / : Kim JY, Vigneron SF, Billesbolle C, Manglik A, Shoichet BK

EMDB-48525:
Inactive Mu-Opioid Receptor with Nb6M, NabFab, and isoquinuclidine compound#020_E1
Method: single particle / : Kim JY, Vigneron SF, Billesbolle C, Manglik A, Shoichet BK

EMDB-48526:
Locally-refined Inactive Mu-Opioid Receptor with Nb6M, NabFab, and isoquinuclidine compound #020_E1
Method: single particle / : Kim JY, Vigneron SF, Billesbolle C, Manglik A, Shoichet BK

EMDB-48527:
Inactive Kappa-Opioid Receptor with Nb6M, NabFab, and isoquinuclidine compound #020_E1
Method: single particle / : Kim JY, Vigneron SF, Billesbolle C, Manglik A, Shoichet BK

EMDB-48528:
Locally-Refined Inactive Kappa-Opioid Receptor with Nb6M, NabFab, and isoquinuclidine compound #020_E1
Method: single particle / : Kim JY, Vigneron SF, Billesbolle C, Manglik A, Shoichet BK

PDB-9mqh:
Inactive Mu-Opioid Receptor with Nb6M, NabFab, and isoquinuclidine compound #33
Method: single particle / : Kim JY, Vigneron SF, Billesbolle C, Manglik A, Shoichet BK

PDB-9mqi:
Inactive Mu-Opioid Receptor with Nb6M, NabFab, and isoquinuclidine compound #020_E1
Method: single particle / : Kim JY, Vigneron SF, Billesbolle C, Manglik A, Shoichet BK

PDB-9mqj:
Locally-refined Inactive Mu-Opioid Receptor with Nb6M, NabFab, and isoquinuclidine compound #020_E1
Method: single particle / : Kim JY, Vigneron SF, Billesbolle C, Manglik A, Shoichet BK

PDB-9mqk:
Inactive Kappa-Opioid Receptor with Nb6M, NabFab, and isoquinuclidine compound #020_E1
Method: single particle / : Kim JY, Vigneron SF, Billesbolle C, Manglik A, Shoichet BK

PDB-9mql:
Locally-Refined Inactive Kappa-Opioid Receptor with Nb6M, NabFab, and isoquinuclidine compound #020_E1
Method: single particle / : Kim JY, Vigneron SF, Billesbolle C, Manglik A, Shoichet BK

EMDB-47113:
CryoEM structure of Gq-coupled MRGPRD with a new agonist EP-2825
Method: single particle / : Cao C, Wang C, Liu Y, Fay JF, Roth BL

EMDB-47114:
CryoEM structure of Gq-coupled MRGPRD with a new agonist EP-3945
Method: single particle / : Cao C, Wang C, Liu Y, Fay JF, Roth BL

PDB-9dqh:
CryoEM structure of Gq-coupled MRGPRD with a new agonist EP-2825
Method: single particle / : Cao C, Wang C, Liu Y, Fay JF, Roth BL

PDB-9dqj:
CryoEM structure of Gq-coupled MRGPRD with a new agonist EP-3945
Method: single particle / : Cao C, Wang C, Liu Y, Fay JF, Roth BL

EMDB-45127:
Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '6218
Method: single particle / : Wu C, Skiniotis G

EMDB-45156:
Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-45792:
Constituent EM map: focused refinement of the Venus flytrap (VFT) and cysteine-rich (CRD) domains of the calcium-sensing receptor.
Method: single particle / : Wu C, Skiniotis G

EMDB-45795:
Focused refinement of the Heptahelical transmembrane (7TM) domain of the calcium-sensing receptor
Method: single particle / : Wu C, Skiniotis G

EMDB-45804:
Raw Consensus map of the Calcium-Sensing Receptor in complex with positive allosteric modulator '6218
Method: single particle / : Wu C, Skiniotis G

EMDB-45882:
Raw Consensus map of the Calcium-Sensing Receptor in complex with positive allosteric modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-45901:
Focused refinement of the Heptahelical transmembrane (7TM) domain of the calcium-sensing receptor bound to positive modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-45902:
Focused refinement of the Venus flytrap domain of the calcium-sensing receptor bound to positive modulator '54149
Method: single particle / : Wu C, Skiniotis G

PDB-9c1p:
Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '6218
Method: single particle / : Wu C, Skiniotis G

PDB-9c2f:
Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-42463:
Alzheimer's disease PHF complexed with PET ligand MK-6240
Method: helical / : Kunach P, Shahmoradian SH, Diamond MI, Rosa-Neto P

PDB-8uq7:
Alzheimer's disease PHF complexed with PET ligand MK-6240
Method: helical / : Kunach P, Shahmoradian SH, Diamond MI, Rosa-Neto P

EMDB-40207:
Complex of human cystic fibrosis transmembrane conductance regulator (CFTR) and Z1834339853
Method: single particle / : Liu F, Chen J

PDB-8gls:
Complex of human cystic fibrosis transmembrane conductance regulator (CFTR) and Z1834339853
Method: single particle / : Liu F, Chen J

EMDB-17712:
ST171-bound serotonin 5-HT1A receptor - Gi Protein Complex
Method: single particle / : Schneider J, Gmeiner P, Rasmussen T, Boettcher B

EMDB-17747:
Befiradol-bound serotonin 5-HT1A receptor - Gi Protein Complex
Method: single particle / : Schneider J, Gmeiner P, Hove TT, Rasmussen T, Boettcher B

PDB-8pjk:
ST171-bound serotonin 5-HT1A receptor - Gi Protein Complex
Method: single particle / : Schneider J, Gmeiner P, Rasmussen T, Boettcher B

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more