[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 422 items for (author: shen & jr)

EMDB-63404:
PSI-LHCI supercomplex binding with 4 Lhcas from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

EMDB-63405:
PSI-4 LHCI dimer supercomplex from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

EMDB-66373:
The PSI-ACPI supercomplex from the cryptophyte Chroomonas placoidea
Method: single particle / : Li XY, Mao ZY, Han GY

EMDB-71766:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

EMDB-71767:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71772:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71781:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71782:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-60293:
Structure of the astaxanthin mutant PSI-7VCPI supercomplex in Nannochloropsis oceanica
Method: single particle / : Shen LL, Shen JR, Wang WD

EMDB-60290:
Structure of the canthaxanthin mutant PSI-4VCPI supercomplex in Nannochloropsis oceanica
Method: single particle / : Shen LL, Li ZH, Shen JR, Wang WD

EMDB-60292:
Structure of the astaxanthin mutant PSI-9VCPI supercomplex in Nannochloropsis oceanica
Method: single particle / : Shen LL, Shen JR, Wang WD

EMDB-60291:
Structure of the canthaxanthin mutant PSI-3VCPI supercomplex in Nannochloropsis oceanica
Method: single particle / : Shen LL, Li ZH, Shen JR, Wang WD

EMDB-60294:
Structure of the astaxanthin mutant PSI-5VCPI supercomplex in Nannochloropsis oceanica
Method: single particle / : Shen LL, Shen JR, Wang WD

EMDB-60289:
Structure of the canthaxanthin mutant PSI-5VCPI supercomplex in Nannochloropsis oceanica
Method: single particle / : Shen LL, Li ZH, Shen JR, Wang WD

EMDB-60288:
Structure of the canthaxanthin mutant PSI-9VCPI supercomplex in Nannochloropsis oceanica
Method: single particle / : Shen LL, Li ZH, Shen JR, Wang WD

EMDB-60287:
Structure of the wild-type PSI-5VCPI supercomplex in Nannochloropsis oceanica
Method: single particle / : Shen LL, Li ZH, Shen JR, Wang WD

EMDB-60285:
Structure of the wild-type PSI-9VCPI supercomplex in Nannochloropsis oceanica
Method: single particle / : Shen LL, Li ZH, Shen JR, Wang WD

EMDB-60286:
Structure of the wild-type PSI-8VCPI supercomplex in Nannochloropsis oceanica
Method: single particle / : Shen LL, Li ZH, Shen JR, Wang WD

EMDB-62656:
Cryo-EM structure of PSI-ACPI from Rhodomonas sp. NIES-2332 at 2.08 angstroms resolution
Method: single particle / : Zhang WY, Akita F, Shen JR

EMDB-62717:
Cryo-EM structure of PSI-11ACPIs from Rhodomonas sp. NIES-2332 at 2.14 angstrom resolution
Method: single particle / : Zhang WY, Akita F, Shen JR

EMDB-62846:
cryo-EM structure of PSII-ACPII from Rhodomonas sp. NIES-2332
Method: single particle / : Yonehara N, Akita F, Shen JR

EMDB-65026:
PSI-LHCI of Euglena gracilis strain Z
Method: single particle / : Kato K, Nakajima Y, Shen JR, Nagao R

EMDB-44485:
iSAT PNA - ctrl-C-a2
Method: single particle / : Sheng K, Dong X, Williamson JR

EMDB-44897:
Cryo-EM structure of rhesus antibody T646-a.01 in complex with HIV-1 Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-44890:
Rhesus Fab 42056-a.01 in complex with CAP256SU.wk34 RnS SOSIP Env
Method: single particle / : Gorman J, Kwong PD

EMDB-44891:
Rhesus Fab 40591-a.01 in complex with T250.4 RnS SOSIP Env
Method: single particle / : Gorman J, Kwong PD

EMDB-44892:
Rhesus Fab 6561-a.01 in complex with HIV-1 Ce1176.A3 RnS SOSIP Env
Method: single particle / : Gorman J, Kwong PD

EMDB-44893:
Cryo-EM structure of rhesus antibody 41328-a.01 in complex with HIV-1 Env BG505 DS-SOSIP
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-44728:
Cryo-EM structure of rhesus antibody V031-a.01 in complex with HIV-1 Env BG505 DS-SOSIP
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-44729:
Cryo-EM structure of rhesus antibody 6070-a.01 in complex with HIV-1 Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-44730:
Cryo-EM structure of rhesus antibody 44715-a.01 in complex with HIV-1 Env BG505 DS-SOSIP
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-44733:
Cryo-EM structure of rhesus antibody V033-a.01 in complex with HIV-1 Env BG505 DS-SOSIP
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-62499:
PSII-FCPII supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Kato K, Tsai PC, Nakajima Y, Akita F, Shen JR

EMDB-62790:
PSII-6 FCPII supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Kato K, Tsai PC, Nakajima Y, Akita F, Shen JR

EMDB-62242:
PSI-LHCI of the red alga Galdieria sulphuraria NIES-3638
Method: single particle / : Kato K, Nakajima Y, Shen JR, Nagao R

EMDB-39671:
Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with magnesium-free solutions.
Method: single particle / : Chen JH, Zheng Q, Zhang X

EMDB-39683:
Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with magnesium solutions
Method: single particle / : Chen JH, Zheng Q, Zhang X

EMDB-62419:
Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with EDTA-2Na-containing solutions
Method: single particle / : Chen JH

EMDB-52724:
cryoEM structure of HIV-1 KAKA/G225R mature CA hexamer
Method: single particle / : Zhu Y, Shen J, Shen Y, Xu J, Zhang P

EMDB-62511:
PSI-LHCI supercomplex binding with 10 Lhcas from C. subellipsoidea
Method: single particle / : Tsai PC, Kato K, Shen JR, Akita F

EMDB-62512:
PSI-LHCI supercomplex binding with 8 Lhcas from C. subellipsoidea
Method: single particle / : Tsai PC, Kato K, Shen JR, Akita F

EMDB-51821:
The structure from subtomogram averaging of HIV immature Gag with G225R mutation
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51822:
The structure from subtomogram averaging of HIV-1 immature Gag with KAKA/G225R mutations
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51823:
The structure from subtomogram averaging of HIV-1 immature Gag with KAKA/T8I/G225R mutations
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51824:
The structure from subtomogram averaging of HIV-1 immature Gag with A77V/KAKA/T8I/G225R mutations
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51825:
The structure from subtomogram averaging of HIV-1 immature Gag with KAKA/T8I mutations
Method: subtomogram averaging / : Zhu Y, Lucic A, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51826:
The structure from subtomogram averaging of HIV-1 Gag with K227A mutation
Method: subtomogram averaging / : Zhu Y, Chen L, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-52051:
Cryo-EM Density Map of the Immature HIV-1 CA Hexamer with MA-L20K/E73K/A82T Mutations
Method: subtomogram averaging / : Chen L, Zhang P

EMDB-52052:
Cryo-EM Density Map of the Immature HIV-1 CA Hexamer of Wild Type
Method: subtomogram averaging / : Chen L, Zhang P

EMDB-52059:
Cryo-EM Density Map of the Immature HIV-1 MA Trimer with MA-L20K/E73K/A82T Mutations
Method: subtomogram averaging / : Chen L, Zhang P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more