[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 842 items for (author: sato & k)

EMDB-19675:
CRYO-EM CONSENSUS MAP OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : LM32Cs3H1 sKO STRAIN
Method: single particle / : Rajan KS, Yonath A

EMDB-19676:
CRYO-EM FOCUSED REFINEMENT MAP OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : LM32Cs3H1 sKO STRAIN
Method: single particle / : Rajan KS, Yonath A

EMDB-18993:
pentameric IgMFc-AIM complex global refinement
Method: single particle / : Chen Q, Arai S, Miyazaki T, Rosenthal P

EMDB-18994:
pentameric IgMFc-AIM complex focused refinement
Method: single particle / : Chen Q, Arai S, Miyazaki T, Rosenthal P

PDB-8r83:
pentameric IgMFc-AIM complex global refinement
Method: single particle / : Chen Q, Arai S, Miyazaki T, Rosenthal P

PDB-8r84:
pentameric IgMFc-AIM complex focused refinement
Method: single particle / : Chen Q, Arai S, Miyazaki T, Rosenthal P

EMDB-39577:
E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

EMDB-39578:
E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

EMDB-39579:
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

EMDB-39580:
E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

EMDB-39581:
E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

PDB-8yuo:
E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

PDB-8yup:
E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

PDB-8yuq:
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

PDB-8yur:
E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

PDB-8yus:
E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA
Method: single particle / : Akiyama N, Ishiguro K, Shirouzu M, Suzuki T

EMDB-37910:
Structure of the SARS-CoV-2 BA.2.86 spike glycoprotein (closed state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38459:
Structure of the SARS-CoV-2 BA.2.86 spike protein (1-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38686:
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (2-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38687:
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (2-up and 1-down state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38688:
Structure of SARS-CoV-2 BA.2.86 spike RBD in complex with ACE2 (up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38689:
Structure of SARS-CoV-2 BA.2.86 spike RBD in complex with ACE2 (down state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38690:
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (3-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-60886:
Structure of SARS-CoV-2 JN.1 spike RBD in complex with ACE2 (up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-60904:
Structure of SARS-CoV-2 JN.1 spike glycoprotein in complex with ACE2 (2-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-60905:
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (1 highly-open RBD and 1 partially-open RBD)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-60906:
Structure of SARS-CoV-2 JN.1 spike glycoprotein in complex with ACE2 (2-up and 1-down state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

PDB-8wxl:
Structure of the SARS-CoV-2 BA.2.86 spike glycoprotein (closed state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

PDB-8xux:
Structure of the SARS-CoV-2 BA.2.86 spike protein (1-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

PDB-8xuy:
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (2-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

PDB-8xuz:
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (2-up and 1-down state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

PDB-8xv0:
Structure of SARS-CoV-2 BA.2.86 spike RBD in complex with ACE2 (up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

PDB-8xv1:
Structure of SARS-CoV-2 BA.2.86 spike RBD in complex with ACE2 (down state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

PDB-8xvm:
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (3-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

PDB-9iu1:
Structure of SARS-CoV-2 JN.1 spike RBD in complex with ACE2 (up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-45130:
Cryo-EM Structure of a Tm1C Fibril
Method: helical / : Fonda BD, Kato M, Li Y, Murray DT

PDB-9c1u:
Cryo-EM Structure of a Tm1C Fibril
Method: helical / : Fonda BD, Kato M, Li Y, Murray DT

EMDB-37440:
Cryo-EM structure of the inhibitor-bound Vo complex from Enterococcus hirae
Method: single particle / : Suzuki K, Mikuriya S, Adachi N, Kawasaki M, Senda T, Moriya T, Murata T

EMDB-60573:
Cryo-EM Structure of inhibitor-free hERG Channel
Method: single particle / : Miyashita Y, Moriya T, Kato T, Kawasaki M, Yasuda Y, Adachi N, Suzuki K, Ogasawara S, Saito T, Senda T, Murata T

EMDB-60574:
Cryo-EM Structure of astemizole-bound hERG Channel
Method: single particle / : Miyashita Y, Moriya T, Kato T, Kawasaki M, Yasuda Y, Adachi N, Suzuki K, Ogasawara S, Saito T, Senda T, Murata T

EMDB-60575:
Cryo-EM Structure of E-4031-bound hERG Channel
Method: single particle / : Miyashita Y, Moriya T, Kato T, Kawasaki M, Yasuda Y, Adachi N, Suzuki K, Ogasawara S, Saito T, Senda T, Murata T

EMDB-60576:
Cryo-EM Structure of pimozide-bound hERG Channel
Method: single particle / : Miyashita Y, Moriya T, Kato T, Kawasaki M, Yasuda Y, Adachi N, Suzuki K, Ogasawara S, Saito T, Senda T, Murata T

PDB-8zyn:
Cryo-EM Structure of inhibitor-free hERG Channel
Method: single particle / : Miyashita Y, Moriya T, Kato T, Kawasaki M, Yasuda Y, Adachi N, Suzuki K, Ogasawara S, Saito T, Senda T, Murata T

PDB-8zyo:
Cryo-EM Structure of astemizole-bound hERG Channel
Method: single particle / : Miyashita Y, Moriya T, Kato T, Kawasaki M, Yasuda Y, Adachi N, Suzuki K, Ogasawara S, Saito T, Senda T, Murata T

PDB-8zyp:
Cryo-EM Structure of E-4031-bound hERG Channel
Method: single particle / : Miyashita Y, Moriya T, Kato T, Kawasaki M, Yasuda Y, Adachi N, Suzuki K, Ogasawara S, Saito T, Senda T, Murata T

PDB-8zyq:
Cryo-EM Structure of pimozide-bound hERG Channel
Method: single particle / : Miyashita Y, Moriya T, Kato T, Kawasaki M, Yasuda Y, Adachi N, Suzuki K, Ogasawara S, Saito T, Senda T, Murata T

EMDB-35972:
CryoEM Structure of 40-Residue Arctic (E22G) Beta-Amyloid Fibril Derived by Co-Analysis with Solid-State NMR | E22G Abeta40
Method: helical / : Tehrani MJ, Matsuda I, Yamagata A, Matsunaga T, Sato M, Toyooka K, Shirouzu M, Ishii Y, Kodama Y, McElheny D, Kobayashi N

PDB-8j47:
CryoEM Structure of 40-Residue Arctic (E22G) Beta-Amyloid Fibril Derived by Co-Analysis with Solid-State NMR | E22G Abeta40
Method: helical / : Tehrani MJ, Matsuda I, Yamagata A, Matsunaga T, Sato M, Toyooka K, Shirouzu M, Ishii Y, Kodama Y, McElheny D, Kobayashi N

EMDB-39197:
Cryo-EM structure of the channelrhodopsin GtCCR2 focused on the monomer
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

EMDB-39198:
Cryo-EM structure of the channelrhodopsin GtCCR2
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more