[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 822 items for (author: rachel & r)

EMDB-49911:
LmuA_conformation 1
Method: single particle / : Chakravarti A, Zhang Z

EMDB-49915:
LmuA_conformation 2_assymetric
Method: single particle / : Chakravarti A, Zhang Z

EMDB-49922:
LmuABC_apo
Method: single particle / : Chakravarti A, Zhang Z

EMDB-49934:
LmuABC-DNA
Method: single particle / : Chakravarti A, Zhang Z

PDB-9nxx:
LmuA_conformation 1
Method: single particle / : Chakravarti A, Zhang Z

PDB-9ny1:
LmuA_conformation 2_assymetric
Method: single particle / : Chakravarti A, Zhang Z

PDB-9ny5:
LmuABC_apo
Method: single particle / : Chakravarti A, Zhang Z

PDB-9nyg:
LmuABC-DNA
Method: single particle / : Chakravarti A, Zhang Z

EMDB-54140:
Cryo-EM map of the stalled 80S from the ZAK-bound human disome
Method: single particle / : Niu S, Beckmann R

EMDB-54141:
Cryo-EM map of the collided 80S from the ZAK-bound human disome
Method: single particle / : Niu S, Beckmann R

EMDB-54147:
Local refined map focusing on ZAK-RACK1 of the collided 80S
Method: single particle / : Niu S, Beckmann R

EMDB-54148:
Local refined cryo-EM map focusing on ZAK-RACK1 of the stalled 80S
Method: single particle / : Niu S, Beckmann R

EMDB-54149:
Cryo-EM map of the hybrid state translating 80S
Method: single particle / : Niu S, Beckmann R

EMDB-54150:
Cryo-EM map of the hibernating 80S
Method: single particle / : Niu S, Beckmann R

EMDB-54165:
Cryo-EM map of reconstituted ZAK-RBR-40S
Method: single particle / : Niu S, Beckmann R

EMDB-54166:
Cryo-EM map of the stalled 80S from ZAK-K394D-disome
Method: single particle / : Niu S, Beckmann R

EMDB-54167:
Cryo-EM map of the collided 80S from ZAK-K394D-disome
Method: single particle / : Niu S, Beckmann R

EMDB-54172:
Structure of the ZAK-bound human disome
Method: single particle / : Niu S, Beckmann R

EMDB-54236:
Structure of RACK1 bound to the C-terminus of SERBP1 and the RIH region of ZAK
Method: single particle / : Niu S, Beckmann R

PDB-9rpv:
Structure of the ZAK-bound human disome
Method: single particle / : Niu S, Beckmann R

PDB-9rsx:
Structure of RACK1 bound to the C-terminus of SERBP1 and the RIH region of ZAK
Method: single particle / : Niu S, Beckmann R

EMDB-48183:
Antibody fragments from mAb475 and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48184:
Antibody fragments from mAb824 and mAb926 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48185:
Antibody fragments from mAb21, mAb475, and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48186:
Antibody fragments from mAb21 and mAb824 bound to the adhesin protein FimH containing alpha-methyl mannose
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48187:
Antibody fragments from mAb21 and mAb475 bound to the fimbrial tip protein, FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-71842:
Antibody fragment from mAb824 bound to the adhesin protein FimH.
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me4:
Antibody fragments from mAb475 and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me5:
Antibody fragments from mAb824 and mAb926 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me6:
Antibody fragments from mAb21, mAb475, and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me7:
Antibody fragments from mAb21 and mAb824 bound to the adhesin protein FimH containing alpha-methyl mannose
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9ptm:
Antibody fragment from mAb824 bound to the adhesin protein FimH.
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-72036:
Cryo-EM structure of the isethionate TRAP transporter IseQM from Oleidesulfovibrio alaskensis with bound isethionate
Method: single particle / : Newton-Vesty MC, Davies JS, Dobson RCJ

PDB-9pym:
Cryo-EM structure of the isethionate TRAP transporter IseQM from Oleidesulfovibrio alaskensis with bound isethionate
Method: single particle / : Newton-Vesty MC, Davies JS, Dobson RCJ

EMDB-70833:
GATOR2 complex bound to arginine sensor CASTOR1
Method: single particle / : Jansen RM, Hurley JH

EMDB-71136:
Focused map GATOR2-CASTOR1 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71137:
Focused map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71138:
Focused map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71139:
Focused map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71140:
Focused map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71141:
Focused maps for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71142:
Consesus map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71143:
Focused map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

PDB-9oti:
GATOR2 complex bound to arginine sensor CASTOR1
Method: single particle / : Jansen RM, Hurley JH

EMDB-53223:
The structure of the DNA-binding domain of Nuclear Factor 1 X bound to NFI consensus DNA sequence
Method: helical / : Tiberi M, Nardini M, Chaves-Sanjuan A, Gourlay LJ, Bonnet DMV

PDB-9qky:
The structure of the DNA-binding domain of Nuclear Factor 1 X bound to NFI consensus DNA sequence
Method: helical / : Tiberi M, Nardini M, Chaves-Sanjuan A, Gourlay LJ, Bonnet DMV

EMDB-48344:
D24.1M01 Fab bound to HPV16 L1 pentamer
Method: single particle / : Hurlburt NK, Singh S, Rodarte JV, Pancera M

EMDB-48345:
A7M08 Fab bound to HPV16 L1 pentamer
Method: single particle / : Hurlburt NK, Singh S, Rodarte JV, Pancera M

EMDB-48346:
B25M05 Fab bound to HPV16 L1 pentamer
Method: single particle / : Hurlburt NK, Singh S, Rodarte JV, Pancera M

PDB-9ml1:
D24.1M01 Fab bound to HPV16 L1 pentamer
Method: single particle / : Hurlburt NK, Singh S, Rodarte JV, Pancera M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more