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TitleStructural basis for Lamassu-based antiviral immunity and its evolution from DNA repair machinery.
Journal, issue, pagesProc Natl Acad Sci U S A, Vol. 122, Issue 47, Page e2519643122, Year 2025
Publish dateNov 25, 2025
AuthorsMatthieu Haudiquet / Arpita Chakravarti / Zhiying Zhang / Josephine L Ramirez / Alba Herrero Del Valle / Paul Dominic B Olinares / Rachel Lavenir / Massilia Aït Ahmed / M Jason de la Cruz / Brian T Chait / Samuel H Sternberg / Aude Bernheim / Dinshaw J Patel /
PubMed AbstractBacterial immune systems exhibit remarkable diversity and modularity, as a consequence of the continuous selective pressures imposed by phage predation. Despite recent mechanistic advances, the ...Bacterial immune systems exhibit remarkable diversity and modularity, as a consequence of the continuous selective pressures imposed by phage predation. Despite recent mechanistic advances, the evolutionary origins of many antiphage immune systems remain elusive, especially for those that encode homologs of the structural maintenance of chromosomes (SMC) superfamily, which are essential for chromosome maintenance and DNA repair across domains of life. Here, we elucidate the structural basis and evolutionary emergence of Lamassu, a bacterial immune system family featuring diverse effectors but a core conserved SMC-like sensor. Using cryo-EM, we determined structures of the Lamassu complex in both apo- and dsDNA-bound states, revealing unexpected stoichiometry and topological architectures. We further demonstrate how Lamassu specifically senses dsDNA ends in vitro and phage replication origins in vivo, thereby triggering the formation of LmuA tetramers that activate its Cap4 nuclease domain. Our findings reveal that Lamassu evolved via exaptation of the bacterial Rad50-Mre11 DNA repair system to form a compact, modular sensor for viral replication, exemplifying how cellular machinery can be co-opted for novel immune functions.
External linksProc Natl Acad Sci U S A / PubMed:41252147 / PubMed Central
MethodsEM (single particle)
Resolution2.93 - 3.4 Å
Structure data

EMDB-49911, PDB-9nxx:
LmuA_conformation 1
Method: EM (single particle) / Resolution: 3.13 Å

EMDB-49915, PDB-9ny1:
LmuA_conformation 2_assymetric
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-49922, PDB-9ny5:
LmuABC_apo
Method: EM (single particle) / Resolution: 3.21 Å

EMDB-49934, PDB-9nyg:
LmuABC-DNA
Method: EM (single particle) / Resolution: 2.93 Å

Source
  • Escherichia coli (E. coli)
  • vibrio cholerae (bacteria)
KeywordsDNA BINDING PROTEIN / LmuA-conformation 1 / LmuA_asymmetric / LmuABC_Apo / DNA BINDING PROTEIN/DNA / LmuABC-DNA / DNA BINDING PROTEIN-DNA complex

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