[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,489 items for (author: phan & n)

EMDB-73343:
Cryo-EM structure of the VPS13C N-terminal region in complex with Calmodulin
Method: single particle / : Li D, Reinisch KM

EMDB-73344:
Cryo-EM structure of the VPS13C C-terminal region
Method: single particle / : Li D, Reinisch KM

EMDB-73373:
Full-length human VPS13C in complex with calmodulin from the CryoEM composite map
Method: single particle / : Li D, Reinisch KM

PDB-9yqp:
Cryo-EM structure of the VPS13C N-terminal region in complex with Calmodulin
Method: single particle / : Li D, Reinisch KM

PDB-9yqq:
Cryo-EM structure of the VPS13C C-terminal region
Method: single particle / : Li D, Reinisch KM

PDB-9yrm:
CryoEM Structure of VPS13 protein, 1-1390 from C. thermophilum, in complex with calmodulin
Method: single particle / : Li D, Reinisch KM

PDB-9yrp:
Full-length human VPS13C in complex with calmodulin from the CryoEM composite map
Method: single particle / : Li D, Reinisch KM

EMDB-58124:
In situ subtomogram average of a ribosome bound to ribosome associated vesicle in primary neurons expressing KDEL tagged with mNeonGreen (mNeon-KDEL)
Method: subtomogram averaging / : Carter SD, Jensen GJ, Freyberg Z

EMDB-55723:
Adenosine receptor A2a (A2AR)-beta-lactamase fusion bound to beta-lactamase inhibitory protein II (BLIPII) and ZM241385
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-56449:
Consensus map of A2AR-beta-lactamase fusion + BLIPII
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-56450:
Focused map on beta-lactamase + BLIPII region
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-56451:
A2AR-focused map, with ligand ZM241385
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

PDB-9t9p:
Adenosine receptor A2a (A2AR)-beta-lactamase fusion bound to beta-lactamase inhibitory protein II (BLIPII) and ZM241385
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-80888:
Focused refinement cryo-EM map of the A/B/C subunits of the T=3 lake sinai virus 1 (delta N-terminal 48 residues) virus-like particle at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-56110:
Flat clathrin lattice on endosomes
Method: subtomogram averaging / : Gul M, Hakala M, Moparthi SB, Ganeva I, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A, Kudryashev M

EMDB-56112:
Cryo-electron tomogram of endosomes in HeLa cells
Method: electron tomography / : Hakala M, Moparthi SB, Ganeva I, Gul M, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kudryashev M, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A

EMDB-55138:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
Method: single particle / : Madru C, Bourgeois G, Mechulam Y, Schmitt E

PDB-9srd:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
Method: single particle / : Madru C, Bourgeois G, Mechulam Y, Schmitt E

EMDB-56772:
split variant of Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-4
Method: single particle / : Tetter S, Hilvert D

PDB-28ro:
split variant of Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-4
Method: single particle / : Tetter S, Hilvert D

EMDB-52603:
CryoEM structure of the Themis:Grb2 complex with bound ProMacrobody 256
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52604:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 1)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52605:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 2)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52606:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 3)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52607:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 4)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52608:
CryoEM map of Themis bound to ProMacrobody 256
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52609:
3D reconstruction of Themis:ProMacrobody256 after 3D classification (Class 1)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52610:
3D reconstruction of Themis:ProMacrobody256 after 3D classification (Class 2)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52787:
CryoEM structure of the Themis:Grb2 complex with bound ProMacrobody 256, local refinement
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

PDB-9i3p:
CryoEM structure of the Themis:Grb2 complex with bound ProMacrobody 256
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

PDB-9iaz:
CryoEM structure of the Themis:Grb2 complex with bound ProMacrobody 256, local refinement
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-69767:
Nerearchaeum marumarumayae interaction with gram negative bacterium
Method: electron tomography / : Johnson MD, Shepherd DC, Ghosal D

EMDB-69768:
Large cell body of Nerearchaeum marumarumayae
Method: electron tomography / : Johnson MD, Shepherd DC, Ghosal D

EMDB-69769:
Extended cell phenotype of Nerearchaeum marumarumayae
Method: electron tomography / : Johnson MD, Shepherd DC, Ghosal D

EMDB-55166:
RAD51-ssDNA filament in complex with calcium and ATP bound by the RAD54B N-terminus
Method: single particle / : Liang P, Zhang X

EMDB-55189:
RAD51-ssDNA filament in complex with magnesium and ATP bound by the RAD54B N-terminus (peptide)
Method: single particle / : Liang P, Zhang X

EMDB-56178:
RAD51-ssDNA filament in complex with magnesium and ATP bound by the RAD54B N-terminus (beta-barrel)
Method: single particle / : Liang P, Zhang X

EMDB-56179:
RAD51-dsDNA filament in complex with calcium and ATP bound by the RAD54B N-terminus
Method: single particle / : Liang P, Zhang X

EMDB-56447:
RAD51-ssDNA filament in complex with calcium and ATP bound by the RAD54 N-terminus
Method: single particle / : Liang P, Zhang X

PDB-9srz:
RAD51-ssDNA filament in complex with calcium and ATP bound by the RAD54B N-terminus
Method: single particle / : Liang P, Zhang X

PDB-9ssl:
RAD51-ssDNA filament in complex with magnesium and ATP bound by the RAD54B N-terminus (peptide)
Method: single particle / : Liang P, Zhang X

PDB-9trl:
RAD51-ssDNA filament in complex with magnesium and ATP bound by the RAD54B N-terminus (beta-barrel)
Method: single particle / : Liang P, Zhang X

PDB-9trm:
RAD51-dsDNA filament in complex with calcium and ATP bound by the RAD54B N-terminus
Method: single particle / : Liang P, Zhang X

PDB-9tyy:
RAD51-ssDNA filament in complex with calcium and ATP bound by the RAD54 N-terminus
Method: single particle / : Liang P, Zhang X

EMDB-72906:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

PDB-9yfu:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

EMDB-71324:
Cryo-EM structure of human integrin alpha5beta1 in complex with fibronectin (FN 7-10)
Method: single particle / : Ding J, Fantini D, Dedden D, Schumacher S, Biertumpfel C, Mizuno N

PDB-9p6s:
Cryo-EM structure of human integrin alpha5beta1 in complex with fibronectin (FN 7-10)
Method: single particle / : Ding J, Fantini D, Dedden D, Schumacher S, Biertumpfel C, Mizuno N

EMDB-70956:
In situ microtubule structure in the axon of a human neuron
Method: helical / : Zehr EA, Sun S, Roll-Mecak A

PDB-9ox7:
In situ microtubule structure in the axon of a human neuron
Method: helical / : Zehr EA, Sun S, Roll-Mecak A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more