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- EMDB-55138: Cryo-EM structure of P. abyssi 70S ribosome in complex with hiber... -

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Basic information

Entry
Database: EMDB / ID: EMD-55138
TitleCryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
Map data
Sample
  • Complex: Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
    • RNA: x 3 types
    • Protein or peptide: x 62 types
  • Ligand: x 2 types
Keywords70S / ribosome / Hibernation / Pyrococcus abyssi
Function / homology
Function and homology information


ribonuclease P activity / tRNA 5'-leader removal / ribosomal large subunit biogenesis / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / maturation of SSU-rRNA / large ribosomal subunit / ribosomal small subunit assembly / ribosome biogenesis / ribosomal small subunit biogenesis ...ribonuclease P activity / tRNA 5'-leader removal / ribosomal large subunit biogenesis / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / maturation of SSU-rRNA / large ribosomal subunit / ribosomal small subunit assembly / ribosome biogenesis / ribosomal small subunit biogenesis / 5S rRNA binding / small ribosomal subunit / ribosomal large subunit assembly / small ribosomal subunit rRNA binding / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / cytosolic large ribosomal subunit / cytoplasmic translation / tRNA binding / negative regulation of translation / rRNA binding / structural constituent of ribosome / ribosome / translation / ribonucleoprotein complex / mRNA binding / RNA binding / zinc ion binding / cytoplasm / cytosol
Similarity search - Function
Uncharacterised conserved protein, 2xCBS, MJ1404 type / Ribosomal protein L14e / : / : / Ribosomal protein L14, KOW motif / Small zinc finger protein HVO_2753-like, zinc-binding pocket / Small zinc finger protein HVO_2753-like / Small zinc finger protein HVO_2753-like, Zn-binding pocket / Ribosomal protein S27ae / Ribosomal protein L40e, archaeal ...Uncharacterised conserved protein, 2xCBS, MJ1404 type / Ribosomal protein L14e / : / : / Ribosomal protein L14, KOW motif / Small zinc finger protein HVO_2753-like, zinc-binding pocket / Small zinc finger protein HVO_2753-like / Small zinc finger protein HVO_2753-like, Zn-binding pocket / Ribosomal protein S27ae / Ribosomal protein L40e, archaeal / Ribosomal protein S9, archaeal / Ribosomal protein S13, archaeal / Ribosomal protein S17, archaeal / Ribosomal protein S6e, archaeal / Ribosomal protein S4, archaeal / Ribosomal protein S12, archaea / Ribosomal protein S3, archaeal / 30S ribosomal protein S3Ae / : / Ribosomal protein S7, archaeal / Ribosomal protein S19e, archaeal / Ribosomal protein S11, archaeal / Ribosomal protein S2, archaeal / Ribosomal protein S14, type Z, archaeal / Ribosomal protein S8e, archaeal / Ribosomal protein L15e, archaeal / Ribosomal protein L30, archaeal / Ribosomal protein L6P, archaea / Ribosomal protein L14P, archaeal / Ribosomal protein L21e, archaeal / Ribosomal protein L18e, archaea / Ribosomal protein L10e, archaea / Ribosomal protein L3, archaeal / Ribosomal protein L4, archaea / Ribosomal protein L5, archaeal / Ribosomal protein L32e, archaeal / : / : / Ribosomal protein L7Ae, archaea / Domain in cystathionine beta-synthase and other proteins. / CBS domain superfamily / CBS domain / CBS domain / CBS domain profile. / : / Ribosomal protein L30e / Ribosomal L15/L27a, N-terminal / : / Ribosomal protein L23 / Ribosomal protein L2, archaeal-type / metallochaperone-like domain / TRASH domain / zinc finger / Ribosomal protein S5, eukaryotic/archaeal / Ribosomal protein S19e, conserved site / Ribosomal protein S19e signature. / Ribosomal protein L10e, conserved site / Ribosomal protein L10e signature. / Ribosomal protein L19/L19e conserved site / Ribosomal protein L19e signature. / Ribosomal protein L44e signature. / Zinc finger C2H2 type domain profile. / Ribosomal protein L10e / Ribosomal protein L24e, conserved site / Ribosomal protein L24e signature. / Ribosomal protein L18/L18-A/B/e, conserved site / Ribosomal protein L18e signature. / Ribosomal protein L34e, conserved site / Ribosomal protein L34e signature. / Ribosomal protein S10, eukaryotic/archaeal / : / Ribosomal protein L30e signature 1. / Ribosomal protein L44e / Ribosomal protein L44 / 50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a / Ribosomal protein L35Ae, conserved site / Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A / Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A / Ribosomal protein 60S L18 and 50S L18e / Ribosomal protein L35Ae signature. / Ribosomal_L40e / Ribosomal protein L40e / Ribosomal protein L40e superfamily / Ribosomal protein S27a / Ribosomal protein S27a / Ribosomal protein S27a / Ribosomal protein S17e, conserved site / Ribosomal protein S17e signature. / : / Ribosomal protein S2, eukaryotic/archaeal / Ribosomal protein L39e, conserved site / Ribosomal protein L39e signature. / Ribosomal protein L30e signature 2. / Ribosomal protein S3Ae, conserved site / Ribosomal protein S3Ae signature. / Ribosomal protein L30e, conserved site / : / 40S ribosomal protein S29/30S ribosomal protein S14 type Z / Ribosomal protein S3, eukaryotic/archaeal / Ribosomal protein L34Ae
Similarity search - Domain/homology
Zn-ribbon RNA-binding protein involved in translation / C2H2-type domain-containing protein / Small ribosomal subunit protein eS28 / Small ribosomal subunit protein eS31 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS12 / Large ribosomal subunit protein eL37 / Large ribosomal subunit protein eL40 / Large ribosomal subunit protein eL8 / Small ribosomal subunit protein uS11 ...Zn-ribbon RNA-binding protein involved in translation / C2H2-type domain-containing protein / Small ribosomal subunit protein eS28 / Small ribosomal subunit protein eS31 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS12 / Large ribosomal subunit protein eL37 / Large ribosomal subunit protein eL40 / Large ribosomal subunit protein eL8 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein eS32 / Large ribosomal subunit protein eL42 / Small ribosomal subunit protein eS27 / Small ribosomal subunit protein eS24 / Large ribosomal subunit protein eL20 / Large ribosomal subunit protein eL31 / Large ribosomal subunit protein eL39 / Dehydrogenase / Small ribosomal subunit protein eS6 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein eL14 / Large ribosomal subunit protein eL34 / Small ribosomal subunit protein eS8 / Large ribosomal subunit protein eL21 / Large ribosomal subunit protein eL15 / Small ribosomal subunit protein eS17 / Small ribosomal subunit protein eS19 / Small ribosomal subunit protein uS10 / Large ribosomal subunit protein eL24 / Small ribosomal subunit protein uS7 / Large ribosomal subunit protein eL30 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein uS9 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein eL18 / Small ribosomal subunit protein uS13 / Large ribosomal subunit protein eL33 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein uL2 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL22 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL29 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL24 / Small ribosomal subunit protein eS4 / Large ribosomal subunit protein uL5 / Small ribosomal subunit protein uS8 / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein eL32 / Large ribosomal subunit protein eL19 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein eL43 / Small ribosomal subunit protein eS1 / Small ribosomal subunit protein uS15
Similarity search - Component
Biological speciesPyrococcus abyssi GE5 (archaea)
Methodsingle particle reconstruction / cryo EM / Resolution: 2.1 Å
AuthorsMadru C / Bourgeois G / Mechulam Y / Schmitt E
Funding support France, 1 items
OrganizationGrant numberCountry
Agence Nationale de la Recherche (ANR) France
CitationJournal: Nat Commun / Year: 2026
Title: A family of ribosome hibernation factors widespread in Archaea.
Authors: Clément Madru / Gabrielle Bourgeois / Rémi Dulermo / Régine Capeyrou / Gwendoline Joncour / Karima Figuigui / Magalie Duchateau / Julia Chamot-Rooke / Claire Duboc / Stéphane l'Haridon / ...Authors: Clément Madru / Gabrielle Bourgeois / Rémi Dulermo / Régine Capeyrou / Gwendoline Joncour / Karima Figuigui / Magalie Duchateau / Julia Chamot-Rooke / Claire Duboc / Stéphane l'Haridon / Logan Mc Teer / Marta Kwapisz / Béatrice Clouet-d'Orval / Marie Bouvier / Yves Mechulam / Guillaume Borrel / Emmanuelle Schmitt / Didier Flament /
Abstract: Ribosome hibernation preserves translation machinery during stress, yet its mechanisms in Archaea remain poorly defined. Using cryo-EM analysis, we studied hibernation pathways in Pyrococcus abyssi ...Ribosome hibernation preserves translation machinery during stress, yet its mechanisms in Archaea remain poorly defined. Using cryo-EM analysis, we studied hibernation pathways in Pyrococcus abyssi stressed cells. We identified HibA, a previously unrecognized family of hibernation factors widespread in Archaea. HibA consists of a bacterial-like HPF/RaiA domain fused to a Cystathionine Beta Synthase module. Unexpectedly, HibA binds to the ribosome in three different conformations, occupying the A, P and E sites of tRNAs, as well as that of mRNA, enhancing its ability to protect the ribosome from degradation. Idle ribosomes also frequently accumulate the archaeal homolog of eukaryotic ribosome maturation protein SBDS (aSBDS), suggesting that stressed archaeal cells may engage parallel hibernation routes in which aSBDS can complement HibA. Deletion of hibA in Thermococcus barophilus delays recovery from stationary phase and reduces 70S ribosome pools, establishing its role in ribosome preservation. Taxonomic profiling shows that many archaeal lineages encode distinct repertoires of ribosome-associated protection factors, underscoring the modular and multi-layered nature of archaeal hibernation systems. In addition, a comprehensive phylogenetic analysis highlights the evolutionary relationships between prevalent ribosome hibernation factors across Bacteria and Archaea.
History
DepositionSep 24, 2025-
Header (metadata) releaseMay 13, 2026-
Map releaseMay 13, 2026-
UpdateMay 13, 2026-
Current statusMay 13, 2026Processing site: PDBe / Status: Released

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Structure visualization

Supplemental images

emd_55138.png

Downloads & links

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Map

FileDownload / File: emd_55138.map.gz / Format: CCP4 / Size: 178 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Projections & slices

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Size
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AxesZ (Sec.)Y (Row.)X (Col.)
0.84 Å/pix.
x 360 pix.
= 302.04 Å		0.84 Å/pix.
x 360 pix.
= 302.04 Å		0.84 Å/pix.
x 360 pix.
= 302.04 Å

Surface

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Images are generated by Spider.

Voxel sizeX=Y=Z: 0.839 Å
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Contour LevelBy AUTHOR: 0.00125
Minimum - Maximum-0.005545682 - 0.016038943
Average (Standard dev.)0.00012181727 (±0.0007522301)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions360360360
Spacing360360360
CellA=B=C: 302.04 Å
α=β=γ: 90.0 °

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Supplemental data

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Additional map: #1

Fileemd_55138_additional_1.map
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Half map: #2

Fileemd_55138_half_map_1.map
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Half map: #1

Fileemd_55138_half_map_2.map
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Sample components

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Entire : Cryo-EM structure of P. abyssi 70S ribosome in complex with hiber...

EntireName: Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
Components
  • Complex: Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
    • RNA: rRNA 23S
    • RNA: rRNA 16S
    • RNA: rRNA 5S
    • Protein or peptide: 30S ribosomal protein S3Ae
    • Protein or peptide: 30S ribosomal protein S2
    • Protein or peptide: Zn-ribbon RNA-binding protein involved in translation
    • Protein or peptide: 30S ribosomal protein S4
    • Protein or peptide: 30S ribosomal protein S4e
    • Protein or peptide: 30S ribosomal protein S5
    • Protein or peptide: 30S ribosomal protein S6e
    • Protein or peptide: 30S ribosomal protein S7
    • Protein or peptide: 30S ribosomal protein S8
    • Protein or peptide: 30S ribosomal protein S8e
    • Protein or peptide: 30S ribosomal protein S9
    • Protein or peptide: 30S ribosomal protein S10
    • Protein or peptide: 30S ribosomal protein S11
    • Protein or peptide: 30S ribosomal protein S12
    • Protein or peptide: 30S ribosomal protein S14 type Z
    • Protein or peptide: 30S ribosomal protein S15
    • Protein or peptide: 30S ribosomal protein S17
    • Protein or peptide: 30S ribosomal protein S17e
    • Protein or peptide: 30S ribosomal protein S19e
    • Protein or peptide: 30S ribosomal protein S24e
    • Protein or peptide: 30S ribosomal protein S27e
    • Protein or peptide: 30S ribosomal protein S28e
    • Protein or peptide: 30S ribosomal protein S27ae
    • Protein or peptide: 30S ribosomal protein S3
    • Protein or peptide: Small ribosomal subunit protein eS32
    • Protein or peptide: 50S ribosomal protein L7Ae
    • Protein or peptide: 30S ribosomal protein S19
    • Protein or peptide: 30S ribosomal protein S13
    • Protein or peptide: Large ribosomal subunit protein uL2
    • Protein or peptide: Large ribosomal subunit protein uL30
    • Protein or peptide: Large ribosomal subunit protein uL18
    • Protein or peptide: Large ribosomal subunit protein uL3
    • Protein or peptide: Large ribosomal subunit protein eL14
    • Protein or peptide: Large ribosomal subunit protein uL15
    • Protein or peptide: Large ribosomal subunit protein eL39
    • Protein or peptide: Large ribosomal subunit protein uL24
    • Protein or peptide: Large ribosomal subunit protein eL32
    • Protein or peptide: Large ribosomal subunit protein eL37
    • Protein or peptide: Large ribosomal subunit protein uL5
    • Protein or peptide: Large ribosomal subunit protein eL31
    • Protein or peptide: Large ribosomal subunit protein uL23
    • Protein or peptide: Large ribosomal subunit protein uL29
    • Protein or peptide: Large ribosomal subunit protein eL43
    • Protein or peptide: Large ribosomal subunit protein uL13
    • Protein or peptide: Large ribosomal subunit protein eL21
    • Protein or peptide: Large ribosomal subunit protein eL19
    • Protein or peptide: Large ribosomal subunit protein eL24
    • Protein or peptide: Large ribosomal subunit protein eL42
    • Protein or peptide: Large ribosomal subunit protein uL4
    • Protein or peptide: Large ribosomal subunit protein uL6
    • Protein or peptide: Large ribosomal subunit protein eL30
    • Protein or peptide: Large ribosomal subunit protein eL18
    • Protein or peptide: Large ribosomal subunit protein eL15
    • Protein or peptide: Large ribosomal subunit protein uL22
    • Protein or peptide: Large ribosomal subunit protein eL34
    • Protein or peptide: Large ribosomal subunit protein uL16
    • Protein or peptide: Large ribosomal subunit protein eL40
    • Protein or peptide: Large ribosomal subunit protein eL33
    • Protein or peptide: Large ribosomal subunit protein uL14
    • Protein or peptide: Large ribosomal subunit protein eL20
    • Protein or peptide: C2H2-type domain-containing protein
    • Protein or peptide: Dehydrogenase
  • Ligand: MAGNESIUM ION
  • Ligand: ZINC ION

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Supramolecule #1: Cryo-EM structure of P. abyssi 70S ribosome in complex with hiber...

SupramoleculeName: Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#65
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)

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Macromolecule #1: rRNA 23S

MacromoleculeName: rRNA 23S / type: rna / ID: 1 / Number of copies: 1
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 984.30175 KDa
SequenceString: CGAGGGCUCG GGUAGAAGAC C(4AC)GGUUGAUG GGGCGGGGAU GUAAGCGGGA AGGGUCAAC(4AC) GACCCGCUUA GU CUGCCGC CCCCAAUCGC C(4AC)GAGGUCCU GUCCCCCGAG GGGGUCAGGA CACUAAGCCG CC(4AC)GGUGGAU GGCUC GGCU ...String:
CGAGGGCUCG GGUAGAAGAC C(4AC)GGUUGAUG GGGCGGGGAU GUAAGCGGGA AGGGUCAAC(4AC) GACCCGCUUA GU CUGCCGC CCCCAAUCGC C(4AC)GAGGUCCU GUCCCCCGAG GGGGUCAGGA CACUAAGCCG CC(4AC)GGUGGAU GGCUC GGCU CGGGGCGC(4AC)G ACGAAGGGCG UGGCAAGCUG CGAUAAGCCC CGGCGAGGCG CAGGCAGC(4AC)G UCGAACCG G GGAUUCC(4AC)GA AUGGGACCUC C(4AC)GCGGCUUA UGCCGCACUC CGGGGCAUAA GCCCCGGAGG GGGAACGCGG G GAAUUGAA ACAUCUUAGU ACC(4AC)GCAGGA AAAGAAA(OMG)CA AAAGCGAUGC (4AC)GUGAGUAGG GGCGAC (4AC)GA AAGCGGCACA GGGCAAACUG AACCCCGGGC CGACGAGGUU CGGGGGAUGU GGGGUUGUAG GGCCCCCGUA UGA GACCCU CGCGGGUGAA GC(4AC)GAAGUC(4AC) GCUGGAACGC GGCGCCGGAG AGGGUGAUAG CCCCGUAGGC GUAAGC CCG CAGGGUCUCG GGGGACCCUG AGUAC(4AC)GUCG GUUGGAUAUC CGGCGGGAAG CUGGGAGGCA UCGGCUCCCA ACC CUAAAU ACGUCCCGAG ACCGAUAGCG AACUAGUA(OMC)(LHH) GUGAGGGAAA GCUGAAAAGC ACCC(4AC)GGGAG GG GGGUGAA AAGAGCCUGA AACCGGGCGG CGAUAGGAGG GUGCGGCC(4AC)G AAAGGAAUGA GCCUCCCCGA AGGAAACCG CGGCGACGCG GGAGUACGAG GGGAGGGGAC CGGGGUUGCA CCGUCCGUCU UGAAACACGG GGCA(OMG)GGAGU UCGCGG C(4AC)G UGGCGAGGUU AAGGGGGUUA AGCCC(4AC)GUAG C(4AC)GCAGGGAA ACCGACAUGC CCGCAGCCGG GCCUC GAGC CCGGUGAGGG GCGGGGUGCG AAAGCGCCCG GAGUCACGGC CGCGAGACC(4AC) (OMG)AAACCGGUC GAUCUAGC C CGGGGCAGGG UGAAGUCCCU CAACAGAGGG AUGGAGGCC(4AC) GCUAGGGGUG CUGAUGUGCA GUUCGCUCCC GUGAC CCCG GGCUAGGGGU GAAAGGCCAA UCGAGGC(4AC)GG AGAU(A2M)GCUGG UUCC(4AC)GC(4AC)GA AUCAUCCCGC AGGAUGGCC UCCCCGGAGG UAGGCGGUGG GGUAGAGCAC UGAUUGGGGG UGCAGGGGGC GAAAGCCCCC GGCCCCCUGU C AAACUCCG AACCCACCGC CGCCGUAGAU GGGGGGAGUA GGGUGGCGGU GUAAGCCGUC CAC(4AC)GAGAGG GGAACAAC C CAGAC(4AC)GGGG UUAAGGCCCC AAAGUGCCGG CUAAGUGUUA CUCCAAAGGG UGUCC(4AC)GGGC CUUAGACAGC G GGGAGGUA GGCUUAGAAG CAGCCAUCCU UUAAAGAGUG CGUAACAGCU CACCCGUCGA GGUCCGGGGC CCCGAAAAUG GA CGGGGCU CAAGCCGGCC GCCGAGACCC CGGCGCACGG ACCGAUUGGU CCGUGAUCGG GUAGGCGGGC GUGC(4AC)GGUG GCGUAGAAGC CGGGCCGUAA GGUCCGGUGG AGCCGCCGGU AUCGCGGAUC CUGCCGGGAG UAGCAGCGUA GUCGGGUGAG AAUCC(4AC)GAC (4AC)GC(4AC)GGAGGG GCCAGGGUUC CACAGGCAAU GGUCGUCAGC (4AC)GUGGGUUAG UCGGU CCUA ACCC(4AC)GCC(4AC)G UAACUCGGCG CGGGGGAAAG GGAAACGGGU UAAUAUUCC(4AC) GUAC(4AC)GCGGG GGUAGGUGC GGCAACGCAA GCC(4AC)GGAGGG UGACGCCUCG GGGUAGGCGG ACCGGCCGAU GAGGCCGGCU AAGCGUA UA AGCC(4AC)GGGGA GUGC(4AC)GUAAU GGCGAGAAC(4AC) GGGUGAAAGC GCGAAUGGCC CCCCCGUUAG GGGGGU UCC GCCGAUCCCU GGGGCCCGUG AAAAGCCCUC CGGGAAUUCC GAUCCCC(4AC)GC GAC(4AC)GUAC(4AC)G AGAAC (4AC)GAC ACAGGUGCCC CUGGGUGAGA AGCCUAAGGC GUGUCGGGGG AAACC(4AC)GGC(4AC) GAGGGAACU(OMC) GGCAAACUG GCCC(4AC)GUAAC UUCGGGAGAA GGGGUGCCUG CGGGUGCGUA ACC(4AC)GCAGGU CGCAGUGACU AGG GGGGCC (4AC)GACUGUUUA AUAAAAACAC AGGUCCCAGC UAGCC(4AC)GAAA GGGUUUGUAC UGGGGC(4AC)GAC GC CUGC(5MC)CA GUGCCGGUAU GUGAAGCCCG GGUACAACCG GGUGAAGCAC (4AC)G(OMG)UAAAC(OMG)G C(OMG)G GGGUAA CUAUAAC(5MC)(5MC)U CUUAAGGU(A2M)G CGAAAUUC(5MC)U UGUCGGUUAA AUG(5MC)CGAC(5MC)U GCAUGAAUG GCGUAACGAG GUCCCCGCUG UCCCCGGCCG GGGCC(4AC)GGCG AAACCUCUGC CUGGCGCGCA UGCCAGG GA CCCC(4AC)GGUGG GAAGCGAAGA CCCCAUGGAG CUUUACUGCA GCCUGC(4AC)GUU GCCACGCGGC GGGGGGUGCG CAGCGUAGG CGGGAGGCGU CGAAGCCCGG CCUCCGGGUC GGGUGGAGCC GUCCAUGAGA CACCGCCCAC UCCUCGCCGC G UGGCUAAC CCCCGAAAGG GGGGACAGCG GUAGGUGGGC AGUUUGGCUG GGGCGGCACG CCCC(4AC)GAAAA GGUAUCGG G GGCGCCCUAA GGUCGGCUCA GGCGGGUCAG GAAUC(4AC)GC(4AC)G UAGAGUGCAA GGGCAAAAGC (4AC)GGCCUG AC UGGACC(4AC)GUA ACAGAGGCGG GUCCAGCCC(4AC) GAAAGGGUGG CCUAGCGAAC CCCUGUGCCU CCC(4AC)GG UGG GGGCCAGGGA UGACAGAAAA GCUACCCUGG (OMG)GAUAACAGA GUCGUCUCGG GCGAGAGCCC AUAUCGACCC (4AC)GAGGCUUG CUACCU(5MC)GCU GUCGGCUCUU CCCAUCCUGG CCCUGCAGCA GGGGCCAAGG GUGGGGG(OMU)G UUCACCCAUU AAAGGGGAAC GUGAGCUGGG UUUAGACCGU CGUGAGACAG GUCGGAUGCU AUCUACCGGG GGUGUUGGC (4AC)GCCUGAGGG GAAGGUGCCC UUAGUACGAG AGGAACAGGG CGC(4AC)GCGGCC UCUGGUCUAC (4AC)GGUUGUC C UCC(4AC)GGGCAU CGCCGGGCAG CUACGC(4AC)GCA GC(4AC)GAUAAGG CCUGAAGGCA UCUAAGGC(4AC)G AAG CGGCCC C(4AC)GAAAAUAG GCGGCCGUUC

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Macromolecule #2: rRNA 16S

MacromoleculeName: rRNA 16S / type: rna / ID: 2 / Number of copies: 1
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 492.728781 KDa
SequenceString: GGCCGUACUC CCUUAAUUC(4AC) GG(OMU)UGAUCCU GCCGGAGGCC ACUGCUAUGG GGGUC(4AC)GACU AAGCCA (OMU)GC GAGUCAAGGG GGCGUCCCUU CUGGGACGCC ACCGGCGGAC GGCUCAGUAA CACGUCGGUA AC(OMC)UACCCU CGGGAGGGGG ...String:
GGCCGUACUC CCUUAAUUC(4AC) GG(OMU)UGAUCCU GCCGGAGGCC ACUGCUAUGG GGGUC(4AC)GACU AAGCCA (OMU)GC GAGUCAAGGG GGCGUCCCUU CUGGGACGCC ACCGGCGGAC GGCUCAGUAA CACGUCGGUA AC(OMC)UACCCU CGGGAGGGGG AUAACCCCGG GAAACUGGGG CUAAUCCCCC AUAGGCCUGG GGUACUGGAA GGUCCCCAGG CCGAAAGGGA GCCGUAAGG CUCCGCCCGA GGAUGGGCCG GCGGC(LHH)GAUU AGGUAGUUGG UGGGGUAACG GCCCACCAAG C(4AC)G AAGAUC GGUACGGGC(4AC) GUGAGAGCGG GAGCC(4AC)GGAG AUGGACACUG AGACACGGGU CCAGGCCCUA CGGGGC GCA GCAGGCGCGA (A2M)ACCUC(4AC)GCA AUGCGGGAAA C(4AC)GCGACGGG GGGACCCCCA GUGCCGUGCC UCUGG CACG GCUUUUCCGG AGUGUAAAAA GCUCCGGGAA UAAGG(OMG)CUG(OMG) GCAAGGC(4AC)GG UGGCAGCCGC CGCG GUAAU ACCGGCGGCC (4AC)GAGUGGU(OMG)G CCACUAUUAU UGGG(5MC)CUAAA GCGGC(4AC)GUAG CCGGGCCCG UAAGUCCCUG GCGAAAUCCC ACGGCUCAAC (4AC)GUGGGGCUC GCUGGGGAUA CUGCGGGCCU UGGGAC(4AC)GGG AG AGGC(4AC)GG GGGUACCCCC GGGGUAGG(OMG)G UGAAAUCCUA UAAUCCCGGG G(OMG)GACCGCCA GUGG(5MC)GA AG GCGCC(4AC)GGCU GGAACGGGUC (4AC)GACGGUGAG GGC(4AC)GAAGGC CAGGGGAGCG AAC(4AC)GGAUUA GA UACCCGG GUAGUC(OMC)(OMU)GG CUGUAAAGGA (OMU)GCGGGCUAG GUGUCGGGCG AGCUUCGAGC UCGCCCGGUG C (4AC)G(OMU)AGGGA AGC(4AC)GUUAAG (OMC)C(4AC)GC(4AC)GCCU GGGGAGUACG GC(4AC)GCAA(OMG)G (5MC)UGAAACUUA AAGGAAUUGG CGGGGGAGCA CUACAAGG(OMG)G UGGAGCGUGC GGUUUAAUU(OMG) GAU(B8H) CAACG CCGGGAACCU CAC(4AC)GGGGGC GACGGCAGGA UGAAGGCCAG GCUGAAGGUC UUGCCGGACG CGCCGAGAGG A GGUGCAUG GC(5MC)GC(4AC)GUCA GCUCGUA(OMC)(LHH)G UGAGGCGUCC ACUUAAGUGU GGUAAC(OMG)AGC GA GACCCGC GCCCCCAGUU GCCAGUCCCU CCCGCUCGGG AGGGAGGCAC UCUGGGGGGA CUGCCGGCGA UAAGC(4AC)GGA GGAAGGGGCG GGCGACGGUA GGUCAG(OMU)AUG CCC(4AC)GAAACC CCCGGGCUAC A(5MC)GCGCGCUA CAAUGGGC G GGACAAUGGG UGC(4AC)GACCC(4AC) GAAAGGGGGA GGUAAUCCCC UAAACCCGCC CUCAGUUCGG AUCGCGGGCU G CAACUCGC CCGCGUGAAG CUGGAAUCCC UAGUACCCGC GCGUCAUCAU CGCGCGGCGA AUACGUCCCU GCUCCUUGCA CA CAC(5MC)G(OMC)C CG(OMU)CACUCCA CCCGAGCGGG GCCUAGGUGA GGCCCGAUCU CCUUCGGGAG GUCGGGUCGA G CCUAGGCU CCGUGAGGGG GGAGAAGUCG (UR3)A(6MZ)CAAGGUA GC(4AC)GUAGGGG (MA6)(MA6)CCUACGG (5MC)U(5MC)GAUCAC(5MC) UCCU

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Macromolecule #3: rRNA 5S

MacromoleculeName: rRNA 5S / type: rna / ID: 3 / Number of copies: 1
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 41.443777 KDa
SequenceString:
ACGGCACGGC GGCCAUAGCG GGGGGGCCAC ACC(4AC)GGUCUC AUUUCGAACC CGGAAGUUAA GCCCCCCAGC GAUCCC GGU UGUACUGCCC UCCGAGAGGG GGCGGGAAGC CGGGGACGCC GCCGGCCAC

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Macromolecule #4: 30S ribosomal protein S3Ae

MacromoleculeName: 30S ribosomal protein S3Ae / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 22.888068 KDa
SequenceString: MAAKRRVSAA KDKWKLKQWY VIYAPDFFGG VEVGLTPADD PEKVLNRVVE VTLKDITGDF LKGHVKLYFQ VYDVKGQNAY TKFKGMKLA RSYIRSLVRR RTTRIDGIFN ITTKDGYKLR VMAMVIAARR IQTSQERAIR KIMQEIIYKK AEELNFKDFV L EAVNGKIA ...String:
MAAKRRVSAA KDKWKLKQWY VIYAPDFFGG VEVGLTPADD PEKVLNRVVE VTLKDITGDF LKGHVKLYFQ VYDVKGQNAY TKFKGMKLA RSYIRSLVRR RTTRIDGIFN ITTKDGYKLR VMAMVIAARR IQTSQERAIR KIMQEIIYKK AEELNFKDFV L EAVNGKIA AEIAKEAKKI YPLKKAEIRK IKVLGEPEVA A

UniProtKB: Small ribosomal subunit protein eS1

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Macromolecule #5: 30S ribosomal protein S2

MacromoleculeName: 30S ribosomal protein S2 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 23.026865 KDa
SequenceString: MADEYLVPLD QYLAAGVHIG TQQKTKDMKK FIYRVRQDGL YVLDVRKTDE RLKVAGKFLA RFDPQSILAV SVRLYGQKPV KKFGEVTGA RAIPGRFLPG TMTNPAVKNF FEPDVIIITD PRADHQAMKE AIEIGIPIVA LVDTENLLSY VDLAIPTNNK G RKALALIY ...String:
MADEYLVPLD QYLAAGVHIG TQQKTKDMKK FIYRVRQDGL YVLDVRKTDE RLKVAGKFLA RFDPQSILAV SVRLYGQKPV KKFGEVTGA RAIPGRFLPG TMTNPAVKNF FEPDVIIITD PRADHQAMKE AIEIGIPIVA LVDTENLLSY VDLAIPTNNK G RKALALIY WILAREILYN RGEISSREEF KIPVEEFEMK IVRR

UniProtKB: Small ribosomal subunit protein uS2

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Macromolecule #6: Zn-ribbon RNA-binding protein involved in translation

MacromoleculeName: Zn-ribbon RNA-binding protein involved in translation / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 7.163395 KDa
SequenceString:
MAENVELKFE IPVCTSCGRE ITPREHATHF VCPNCGEAII WRCETCRLLA KPYKCPKCGW EGP

UniProtKB: Zn-ribbon RNA-binding protein involved in translation

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Macromolecule #7: 30S ribosomal protein S4

MacromoleculeName: 30S ribosomal protein S4 / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 21.38191 KDa
SequenceString:
MGDPKRQRKK YETPPHPWIK ERLDRERVLM DKYELKNKKE LWKHETQLKN FRRRARRLLA ARGKQAEIER EQLLARLKRL GLLPEDAVL DDVLSLTIED ILERRLQTIV YKKGLARTMR QARQLIVHGH IEVNGQIIRS PSYLVLKEEE DTITYARTSP F ANPQHPER MMIEKAKQGG EA

UniProtKB: Small ribosomal subunit protein uS4

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Macromolecule #8: 30S ribosomal protein S4e

MacromoleculeName: 30S ribosomal protein S4e / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 28.246119 KDa
SequenceString: MARKGPKRHL KRLAAPTSWY IERKAYKWAV RPRPGPHNMR TSIPLLYIVR DYLGYAKTAR EARKILNEGK FLVDGRVRKD YKFPVGIMD VVSIPETGEH YRVLPNRIGK LILHPISEEE ANIKPLRIRN KRMVKGAKIQ LNFHDGTNHL IPLSEKDNYF T SYTVLMKV ...String:
MARKGPKRHL KRLAAPTSWY IERKAYKWAV RPRPGPHNMR TSIPLLYIVR DYLGYAKTAR EARKILNEGK FLVDGRVRKD YKFPVGIMD VVSIPETGEH YRVLPNRIGK LILHPISEEE ANIKPLRIRN KRMVKGAKIQ LNFHDGTNHL IPLSEKDNYF T SYTVLMKV PEREILEVLP FEKGAYVFVT QGKNVARKGR IVEIKKFPMG WPDVVTIEDE EGELFDTLKE YAFVVGRDKP RI SLP

UniProtKB: Small ribosomal subunit protein eS4

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Macromolecule #9: 30S ribosomal protein S5

MacromoleculeName: 30S ribosomal protein S5 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 26.523904 KDa
SequenceString: MSQEWKEYAK RVLDEWQPKT KLGMLVKEGQ ITDIHEIFRK GYQIKEPEII DVLLPEVNAR ENQEILDIAL TVRMTDSGRR VRFRVLAAV GNRDGYVGLG IGHGREVGIA IRKAINYAKL NIIEIKRGCG SWECRCRRPH SVPFTVEGKE GSVRVKLIPG P RGLGLVIG ...String:
MSQEWKEYAK RVLDEWQPKT KLGMLVKEGQ ITDIHEIFRK GYQIKEPEII DVLLPEVNAR ENQEILDIAL TVRMTDSGRR VRFRVLAAV GNRDGYVGLG IGHGREVGIA IRKAINYAKL NIIEIKRGCG SWECRCRRPH SVPFTVEGKE GSVRVKLIPG P RGLGLVIG DVGKKILRLA GIQDVWSQTL GETRTTVNFA KAVFNALYNT NKVVVTPEMI ERYGIVVGRA MPASFTLE

UniProtKB: Small ribosomal subunit protein uS5

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Macromolecule #10: 30S ribosomal protein S6e

MacromoleculeName: 30S ribosomal protein S6e / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 14.029461 KDa
SequenceString:
MATFKLVISD PKTGIAKQIE ITGPEAEKLI GKRIGDQIPV KELGINLNEL FGKEFPEDVK MEIRGGTDKD GFPMRPDIHG PRRVRILLS KGPGFRPKEK GERRKKTVRG NTISPEIVQV NVKLVY

UniProtKB: Small ribosomal subunit protein eS6

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Macromolecule #11: 30S ribosomal protein S7

MacromoleculeName: 30S ribosomal protein S7 / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 24.662818 KDa
SequenceString: MAKPLSERFF IPHEIKVMGR WSTEDVEVRD PSLKPYINLE PRLLPHTHGR HAKKHFGKAN VHIVERLINK IMRSGGSHYK VAGHFMRRE HRSLNSKKVK AYEVVKEAFK IIEKRTGKNP IQVLVWAIEN AAPREDTTSV MFGGIRYHVA VDISPMRRLD V ALRNIALG ...String:
MAKPLSERFF IPHEIKVMGR WSTEDVEVRD PSLKPYINLE PRLLPHTHGR HAKKHFGKAN VHIVERLINK IMRSGGSHYK VAGHFMRRE HRSLNSKKVK AYEVVKEAFK IIEKRTGKNP IQVLVWAIEN AAPREDTTSV MFGGIRYHVA VDISPMRRLD V ALRNIALG ASAKCYRTKM SFAEALAEEI ILAANKDPKS YAYSKKLEIE RIAESSR

UniProtKB: Small ribosomal subunit protein uS7

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Macromolecule #12: 30S ribosomal protein S8

MacromoleculeName: 30S ribosomal protein S8 / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 14.772246 KDa
SequenceString:
MTLLDPLANA LSHITNSERV GKREVYIKPA SKLIGEVLRV MQKYGYIGEF EFIDDGRAGV YRVQLLGKIN KAGAIKPRFP VKARDYERW EKRFLPAFEF GILIVSTSQG VMSHKEAREK GIGGRLIAYV Y

UniProtKB: Small ribosomal subunit protein uS8

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Macromolecule #13: 30S ribosomal protein S8e

MacromoleculeName: 30S ribosomal protein S8e / type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 14.293733 KDa
SequenceString:
MAIWQGRSLR KPSGGRIVLA RKKRKRELGR EPSNTRVAEQ DKRKIIRTYG GNKKVRLTAA AYANVFDKSG KGRKVRIIRV IENPANRQF ARRNIITKGA IIETEIGKAK VTSRPGQDGV VNAILLEE

UniProtKB: Small ribosomal subunit protein eS8

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Macromolecule #14: 30S ribosomal protein S9

MacromoleculeName: 30S ribosomal protein S9 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 15.293867 KDa
SequenceString:
MRIIQTTGKR KTAIARAVIR EGKGRVRING KPVELVEPEI ARFTILEPLI LAGEEIWNSV DIDVKVQGGG FMGQAEAARI AIARALVEW TGDMNLKEKF IKYDRTMLVG DPRRTEPHKP NRSTKGPRAK RQKSYR

UniProtKB: Small ribosomal subunit protein uS9

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Macromolecule #15: 30S ribosomal protein S10

MacromoleculeName: 30S ribosomal protein S10 / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 11.795769 KDa
SequenceString:
MQKARIKLAS TNVRSLEEVA NQIKQIAERT GVRMSGPIPL PTKRIRIVTR KSPDGEGSAT FDRWELRIHK RLIDIEADER AMRQIMRIR VPEDVTIEIE LIS

UniProtKB: Small ribosomal subunit protein uS10

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Macromolecule #16: 30S ribosomal protein S11

MacromoleculeName: 30S ribosomal protein S11 / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 14.77295 KDa
SequenceString:
MSEEQVNIKK KEKWGIAHIY SSYNNTIIHI TDITGAETIS RWSGGMVVKA DRDEPSPYAA MLAARRAAEE ALEKGIVGVH IRVRAPGGS KSKTPGPGAQ AAIRALARAG LKIGRVEDVT PIPHDGTRPK GGRRGRRV

UniProtKB: Small ribosomal subunit protein uS11

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Macromolecule #17: 30S ribosomal protein S12

MacromoleculeName: 30S ribosomal protein S12 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 16.477621 KDa
SequenceString:
MPGKKAPNGE FAGRKLKLKR KKFRWSDIRY KRRVLRLKEK SDPLEGAPQA RGIVLEKIAV EAKQPNSGMR KAVRVQLIKN GKVVTAFCP GDGAIKFIDE HDEVIIEGIG GPKGGSMGDI PGIRYKVVKV NRVSLKELVK GRKEKPRR

UniProtKB: Small ribosomal subunit protein uS12

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Macromolecule #18: 30S ribosomal protein S14 type Z

MacromoleculeName: 30S ribosomal protein S14 type Z / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 6.644064 KDa
SequenceString:
MAKADYNKRK PRKFGKGARR CIRCGQYGPI IRIHGLMLCR HCFREVAPKL GFRKYE

UniProtKB: Small ribosomal subunit protein uS14

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Macromolecule #19: 30S ribosomal protein S15

MacromoleculeName: 30S ribosomal protein S15 / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 18.697143 KDa
SequenceString:
MARMHARKRG KSGSKRPPRT APPIWLEYTV EDIENLVVKL RKEGYSTAMI GTILRDQYGI PTVKLFRDPD NPNRKLTITR ILEKHGLAP EIPEDLMFLI KRAVNLRKHL EQHPKDLHSM RGLQLIESKI RRLVKYYKRK GKLPKDWRYD PEQAKLLVR

UniProtKB: Small ribosomal subunit protein uS15

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Macromolecule #20: 30S ribosomal protein S17

MacromoleculeName: 30S ribosomal protein S17 / type: protein_or_peptide / ID: 20 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 13.364604 KDa
SequenceString:
MVRDIGLRIQ PPAEKCDDPK CPWHGHLKIH GRVFEGIVVS DKPRKTVTVE RQYYHYLKKY ERYELRRSRI HAHNPPCINA KVGDRVLIA ETRPLSKTKH FVVVAVLERA EERR

UniProtKB: Small ribosomal subunit protein uS17

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Macromolecule #21: 30S ribosomal protein S17e

MacromoleculeName: 30S ribosomal protein S17e / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 8.059528 KDa
SequenceString:
MGKIRQGFIK RVARELFNKY PNEFTRDFEH NKKKVEELTN VTSKKIRNRI AGYITKLVRM KEEGKIL

UniProtKB: Small ribosomal subunit protein eS17

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Macromolecule #22: 30S ribosomal protein S19e

MacromoleculeName: 30S ribosomal protein S19e / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 17.42225 KDa
SequenceString:
MATVYDVPGD LLVERVAQRL KEIPEIKPPE WAPFVKTGRH KERLPEQEDW WYYRVASILR RVYLDGPVGI ERLRTYYGGR KNRGHAPER FYKAGGSIIR KALQQLEAAG FVEKVPGKGR VITPKGRSFL DKIATELKKE LEEIIPELKK Y

UniProtKB: Small ribosomal subunit protein eS19

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Macromolecule #23: 30S ribosomal protein S24e

MacromoleculeName: 30S ribosomal protein S24e / type: protein_or_peptide / ID: 23 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 11.798637 KDa
SequenceString:
MEIKITEVKE NKLIGRKEIY FEIYHPGEPT PSRKDVKGKL VAMLDLNPET TVIQYIRSYF GSYKSKGYAK YYYDKDRMLY IEPEYILIR DGIIEKKEGE

UniProtKB: Small ribosomal subunit protein eS24

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Macromolecule #24: 30S ribosomal protein S27e

MacromoleculeName: 30S ribosomal protein S27e / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 7.186609 KDa
SequenceString:
MALPRNVIPM PRSRFLRVKC IDCGNEQIVF SHPATRVRCN VCGATLVEPT GGKGIIRAKI LEVLE

UniProtKB: Small ribosomal subunit protein eS27

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Macromolecule #25: 30S ribosomal protein S28e

MacromoleculeName: 30S ribosomal protein S28e / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 8.102305 KDa
SequenceString:
MAEDEGYPAE VIEIIGRTGT TGDVTQVKVR ILEGRDKGRV IRRNVRGPVR VGDILILRET EREAREIKSR R

UniProtKB: Small ribosomal subunit protein eS28

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Macromolecule #26: 30S ribosomal protein S27ae

MacromoleculeName: 30S ribosomal protein S27ae / type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 5.992168 KDa
SequenceString:
MGQKWKLYIV KDGKVIRKNK FCPRCGPGVF MADHGDRWAC GRCGYTEWKK K

UniProtKB: Small ribosomal subunit protein eS31

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Macromolecule #27: 30S ribosomal protein S3

MacromoleculeName: 30S ribosomal protein S3 / type: protein_or_peptide / ID: 27 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 23.472309 KDa
SequenceString: MAIERYFIRE AVKEMLIDEF LEKELRRAGY GGLDIKKTPL GTKVIIFAAN PGYVIGRGGR RIRELTRILE RQFGLENPQI DVQEIKNPY LNAKVQAVRI AQALERGIHF RRAAYAAMRA IMSNGARGVE IRISGKLTGE RAKSVRFYQG YLAKVGNPAE T LVSKGYAQ ...String:
MAIERYFIRE AVKEMLIDEF LEKELRRAGY GGLDIKKTPL GTKVIIFAAN PGYVIGRGGR RIRELTRILE RQFGLENPQI DVQEIKNPY LNAKVQAVRI AQALERGIHF RRAAYAAMRA IMSNGARGVE IRISGKLTGE RAKSVRFYQG YLAKVGNPAE T LVSKGYAQ ALLKLGVIGV KVAIMPPDAR LPDEIEIIEK PVEEEVSSNE AE

UniProtKB: Small ribosomal subunit protein uS3

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Macromolecule #28: Small ribosomal subunit protein eS32

MacromoleculeName: Small ribosomal subunit protein eS32 / type: protein_or_peptide / ID: 28 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 5.023395 KDa
SequenceString:
MKRRPRKWKK KGRMRWKWIK KRIRRLKRQR KKERGLI

UniProtKB: Small ribosomal subunit protein eS32

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Macromolecule #29: 50S ribosomal protein L7Ae

MacromoleculeName: 50S ribosomal protein L7Ae / type: protein_or_peptide / ID: 29 / Number of copies: 3 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 13.442678 KDa
SequenceString:
MAKPSYVKFE VPKELAEKAL QAVEIARDTG KIRKGTNETT KAVERGQAKL VIIAEDVDPE EIVAHLPPLC EEKEIPYIYV PSKKELGAA AGIEVAAASV AIIEPGKARD LVEEIAMKVR ELMK

UniProtKB: Large ribosomal subunit protein eL8

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Macromolecule #30: 30S ribosomal protein S19

MacromoleculeName: 30S ribosomal protein S19 / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 15.307319 KDa
SequenceString:
MARKEFRYRG YTLEQLMNMS LEELAKLLPA RQRRSLKRGL TPEQKKLLRK IRLAKKGKYN KPIRTHCRDM IVLPEMVGLT IYVHNGKEF VPVEIKPEMI GHYLGEFAPT RKRVQHGAPG IGATRSSMFV AVK

UniProtKB: Small ribosomal subunit protein uS19

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Macromolecule #31: 30S ribosomal protein S13

MacromoleculeName: 30S ribosomal protein S13 / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 16.992912 KDa
SequenceString:
MADFRHIVRV AGVDLDGNKQ LRWALTAIKG VGINFATMVC RVAGLDPFMK AGYLTDEQVK KIEEILQDPV AHGIPRWAVN RPKDYETGR DLHLITAKLD MAIREDIMRL RRIRAYRGIR HELGLPVRGQ RTRSNFRRGQ TVGVSRKKK

UniProtKB: Small ribosomal subunit protein uS13

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Macromolecule #32: Large ribosomal subunit protein uL2

MacromoleculeName: Large ribosomal subunit protein uL2 / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 26.20243 KDa
SequenceString: MGKSLIQQRR GKGSPTFRSP SHRFRGAVKY IPLNYTQDKT LRGVVEEIMH DPGRTAPVAR VRFENGMEKL IIAPEGLLVG QEIYIGPDA PIAIGNTLPL AKIPEGTYVY NIEGIPGDGG KYVRAGGTYA LVVSREKDKV IVQLPSGELK AFNPNCRATI G VVAGGGRL ...String:
MGKSLIQQRR GKGSPTFRSP SHRFRGAVKY IPLNYTQDKT LRGVVEEIMH DPGRTAPVAR VRFENGMEKL IIAPEGLLVG QEIYIGPDA PIAIGNTLPL AKIPEGTYVY NIEGIPGDGG KYVRAGGTYA LVVSREKDKV IVQLPSGELK AFNPNCRATI G VVAGGGRL EKPLVKAGKA YYKYKARNRF WPTPRGVKMN AVNHPFGGKE HHPGKPTTTS RRAPPGRKVG HIAARRTGRR K

UniProtKB: Large ribosomal subunit protein uL2

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Macromolecule #33: Large ribosomal subunit protein uL30

MacromoleculeName: Large ribosomal subunit protein uL30 / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 17.745031 KDa
SequenceString:
MAKLAVIRIR GRVNVKRPVR DTLAMLRLHR VNHCVIVDDT PSYLGMLQKA KDYITWGEIN AETLAKLIRK RGRLIGNKPV TDEYVKEKL GMTIEEFAQK VINGEMSLKD LPNLKPVFRL HPPRGGFRGS KKRSFKEGGA LGYRGEKIND LIERML

UniProtKB: Large ribosomal subunit protein uL30

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Macromolecule #34: Large ribosomal subunit protein uL18

MacromoleculeName: Large ribosomal subunit protein uL18 / type: protein_or_peptide / ID: 34 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 23.308918 KDa
SequenceString: MAHGPRYRVP FRRRREGKTN YRKRLKLLKS GKPRLVVRKS LNHHIAQIIV YDPKGDRTLV SAHTRELIRD FGWKGHCGNT PSAYLLGLL IGYKAKKAGI EEAILDIGLH PPVRGSSVFA VLKGAVDAGL NVPHSPEIFP EDYRIRGEHI AEYARMLKEQ D EEKFRRQF ...String:
MAHGPRYRVP FRRRREGKTN YRKRLKLLKS GKPRLVVRKS LNHHIAQIIV YDPKGDRTLV SAHTRELIRD FGWKGHCGNT PSAYLLGLL IGYKAKKAGI EEAILDIGLH PPVRGSSVFA VLKGAVDAGL NVPHSPEIFP EDYRIRGEHI AEYARMLKEQ D EEKFRRQF GGYLEKGLDP EKLPEHFDEV KARIIEKFES EGARE

UniProtKB: Large ribosomal subunit protein uL18

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Macromolecule #35: Large ribosomal subunit protein uL3

MacromoleculeName: Large ribosomal subunit protein uL3 / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 40.928184 KDa
SequenceString: MGKVHRPRRG SLAFSPRKRA KSIVPRIRSW PKETEVRMLG FAGYKAGMTH ILMIDDEPGL TNGKEIFMPV TIIETPPLRV FGIRAYRQG YLGLETATEV IVPDFELDNY VSKKAKGRKF TFYQLLKRRI ATLPKNYTKD DFEQKLGNLE DMIKEGEIVE V RALVATQP ...String:
MGKVHRPRRG SLAFSPRKRA KSIVPRIRSW PKETEVRMLG FAGYKAGMTH ILMIDDEPGL TNGKEIFMPV TIIETPPLRV FGIRAYRQG YLGLETATEV IVPDFELDNY VSKKAKGRKF TFYQLLKRRI ATLPKNYTKD DFEQKLGNLE DMIKEGEIVE V RALVATQP WVIKLKKKPE VMEYAIGGTS VEEKFNYIKE KLGKELRVGE VLKEGELLDV IAVTKGKGTQ GPVKRWGIKL RA HKDSKGR RKVGSIGPWH PARVMWTVPM AGQMGFHHRT ELNKRLIAIG ENGKLVIDGN EIEITPKGGF PHYGIVRSDF MMI AGSVPG AIKRIIRVRP AIRPPKKKPP VQRPQITYVS VESKQ

UniProtKB: Large ribosomal subunit protein uL3

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Macromolecule #36: Large ribosomal subunit protein eL14

MacromoleculeName: Large ribosomal subunit protein eL14 / type: protein_or_peptide / ID: 36 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 8.913618 KDa
SequenceString:
MPAIDVGRIA VIIAGRRAGQ KCVIVDIIDK NFVLVTGAGL NKVKRRRMNI KHLEPLPEKI DIPRGASDEE VKAALEKAGI SL

UniProtKB: Large ribosomal subunit protein eL14

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Macromolecule #37: Large ribosomal subunit protein uL15

MacromoleculeName: Large ribosomal subunit protein uL15 / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 16.360109 KDa
SequenceString:
MIRRRKKVRK LRGSHTHGWG CKKKHRGGGS KGGRGMAGTG KRNKSKWTWT IKYAPDHLGK RGFSRPPEVQ REVRTVTLKS IDENLDELL QKGIAYEEEG KIIVDTTQFA DKVLGTGKIT KPLVIKARAF SSKAEEKIKA AGGEAVLV

UniProtKB: Large ribosomal subunit protein uL15

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Macromolecule #38: Large ribosomal subunit protein eL39

MacromoleculeName: Large ribosomal subunit protein eL39 / type: protein_or_peptide / ID: 38 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 6.316794 KDa
SequenceString:
MARNKPLAKK LRLAKAMKQN RRVPVWVIVK TNRRVLTHPK RRHWRRTKLK E

UniProtKB: Large ribosomal subunit protein eL39

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Macromolecule #39: Large ribosomal subunit protein uL24

MacromoleculeName: Large ribosomal subunit protein uL24 / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 14.420074 KDa
SequenceString:
MRLNSKQPRK QRKFLYNAPL HLRQKMMAAP LSKELREKYK IRNLPVRVGD KVRIMRGDFK GHEGKVVEVD LKRYRIYVEG ATLRKTNGT EVFYPIHPSN VMIIELNLDD ERRKKIIERR AG

UniProtKB: Large ribosomal subunit protein uL24

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Macromolecule #40: Large ribosomal subunit protein eL32

MacromoleculeName: Large ribosomal subunit protein eL32 / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 15.66075 KDa
SequenceString:
MDEKEFKRLL RVRARLKRKK PRFLRQEWWR YPKFKNDPKW RRPKGIDSKM RLKLKGKPRS PSIGWSSPRL VRGLHPSGYE EVLIHNVKE LEKLDPKRQA ARIAHTVGKK KRIEILKRAQ ELGIKVLNPQ L

UniProtKB: Large ribosomal subunit protein eL32

+
Macromolecule #41: Large ribosomal subunit protein eL37

MacromoleculeName: Large ribosomal subunit protein eL37 / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 7.321802 KDa
SequenceString:
MSSGTPSLGK RNKTPTHIRC RRCGRKAFNV KKGYCAACGF GRSRRLRKYR WSKKWKKKKN VH

UniProtKB: Large ribosomal subunit protein eL37

+
Macromolecule #42: Large ribosomal subunit protein uL5

MacromoleculeName: Large ribosomal subunit protein uL5 / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 21.54917 KDa
SequenceString:
MAITIPNREE ILADWEAHPM RKPRIEKVTI NIGVGESGER LTKAEIMLER LTGQKPIRRK AKKTNRDFGI RRGEPIAVKV TLRGPKAYE MLKRLLAAVD NRLKASSFDE HGNVCFGIDE HINIPGVEYD PEIGIFGMDV CVTLERPGFR VARRKRKRAK I PTRHKLTK EEGMVYMMEE FGVEIVEEEG

UniProtKB: Large ribosomal subunit protein uL5

+
Macromolecule #43: Large ribosomal subunit protein eL31

MacromoleculeName: Large ribosomal subunit protein eL31 / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 11.052216 KDa
SequenceString:
MPIKPGEEVI FTVPIRKIKK IVPRWKRAPR AVKFVREFVA RHAKAQEVII STKVNEKIWE RGIEKPPSRL RVKVKVEEED RDGKKVRIA YVDLA

UniProtKB: Large ribosomal subunit protein eL31

+
Macromolecule #44: Large ribosomal subunit protein uL23

MacromoleculeName: Large ribosomal subunit protein uL23 / type: protein_or_peptide / ID: 44 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 9.893717 KDa
SequenceString:
MDPYKVIIRP VITDKAISLI EKENKLTFIV DRRATKQDIK RAIEEIFNVK VEKVNTLITP KGEKKAYVKL KPEYSASEIA ARLGLF

UniProtKB: Large ribosomal subunit protein uL23

+
Macromolecule #45: Large ribosomal subunit protein uL29

MacromoleculeName: Large ribosomal subunit protein uL29 / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 8.182881 KDa
SequenceString:
MKPSEIREMS IEEIDAKIRE LRLQLAKERG MLTMGTSLEN PMVIRNLRRD IARLLTIKRE KLREMRKK

UniProtKB: Large ribosomal subunit protein uL29

+
Macromolecule #46: Large ribosomal subunit protein eL43

MacromoleculeName: Large ribosomal subunit protein eL43 / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 9.005874 KDa
SequenceString:
MSGTKKVGSA GRFGPRYGLK IRRRVAAVEA KMRQKHVCPV CGRRAVRRIS TGIWQCKKCG AIFAGGAYLP VTPAGKVAKR VVE

UniProtKB: Large ribosomal subunit protein eL43

+
Macromolecule #47: Large ribosomal subunit protein uL13

MacromoleculeName: Large ribosomal subunit protein uL13 / type: protein_or_peptide / ID: 47 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 16.317335 KDa
SequenceString:
MRIINAEGLI LGRLASRVAK MLLEGEEVVI VNAEKAVITG NREVIFSKYK QRTGLRTLTN PRRGPFYPKR SDEIVRRTIR GMLPWKTDR GRKAFKRLKV YVGIPKEFKD KQLETIVEAH VSRLSRPKYV TVGEVAKFLG GKF

UniProtKB: Large ribosomal subunit protein uL13

+
Macromolecule #48: Large ribosomal subunit protein eL21

MacromoleculeName: Large ribosomal subunit protein eL21 / type: protein_or_peptide / ID: 48 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 11.408473 KDa
SequenceString:
MVQKAHSFRR KTRKKLRKHP RRRGLPPLTR FLQEFEVGQR VHIVIEPSYH KGMPDPRFHG RTGTVVGKRG DAYIVEVPDG NKVKTLFIH PVHLRPQK

UniProtKB: Large ribosomal subunit protein eL21

+
Macromolecule #49: Large ribosomal subunit protein eL19

MacromoleculeName: Large ribosomal subunit protein eL19 / type: protein_or_peptide / ID: 49 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 18.240934 KDa
SequenceString:
MKTLKMQRRV AAELLKCGEN RIWIDPERVD DVASAITRED IRRLIKEGVI KKKPVKGQSR YRARIRHEQK KKGRHRGPGS RKGKKTARM GKKELWIKTI RALRKELRKL KEQKKIDRRT YRMLYIRAKG GQFKSKHQLY MFLEEHNLLK KR

UniProtKB: Large ribosomal subunit protein eL19

+
Macromolecule #50: Large ribosomal subunit protein eL24

MacromoleculeName: Large ribosomal subunit protein eL24 / type: protein_or_peptide / ID: 50 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 8.135623 KDa
SequenceString:
MARWNVCSYC GKPFEPGTGK MFVRNDGRVL FFCSRKCERY YFMGRNPRKL KWTKAYQEAR LQRGIRK

UniProtKB: Large ribosomal subunit protein eL24

+
Macromolecule #51: Large ribosomal subunit protein eL42

MacromoleculeName: Large ribosomal subunit protein eL42 / type: protein_or_peptide / ID: 51 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 11.27456 KDa
SequenceString:
MKYPKQIRTY CPFCKRHTIH KVERVKKRPR SELSAGQRRF RRILKGYGGF PRPKPEGREK PVKKLDLRFR CTVCGKAHTR GRGFRVKKF ELVEV

UniProtKB: Large ribosomal subunit protein eL42

+
Macromolecule #52: Large ribosomal subunit protein uL4

MacromoleculeName: Large ribosomal subunit protein uL4 / type: protein_or_peptide / ID: 52 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 28.75874 KDa
SequenceString: MKVKVFDLNG QPVDEIELPK VFFTPFRPDL IRRAVIASWT HRIQPQGRDP MAGKRRVTEN IGKGHGMARV ERLKTPPRYA AFVPFARGG RRTHPPKVEK IIWEGINKKE RRLAIMSAIA ATANYDIVKA RGHIIDNVPQ LPLIVVDDLQ KVSKTRETRE I FKKLGIWD ...String:
MKVKVFDLNG QPVDEIELPK VFFTPFRPDL IRRAVIASWT HRIQPQGRDP MAGKRRVTEN IGKGHGMARV ERLKTPPRYA AFVPFARGG RRTHPPKVEK IIWEGINKKE RRLAIMSAIA ATANYDIVKA RGHIIDNVPQ LPLIVVDDLQ KVSKTRETRE I FKKLGIWD DIERAKEKTG IRAGKGKMRG RRYKKAKGPL IVVGKNEGIV FGARNHPGVD VVVVDNLGVE HLAPGTHPGR LT VWTVSAI ERLKEIYG

UniProtKB: Large ribosomal subunit protein uL4

+
Macromolecule #53: Large ribosomal subunit protein uL6

MacromoleculeName: Large ribosomal subunit protein uL6 / type: protein_or_peptide / ID: 53 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 20.736143 KDa
SequenceString:
MPVDAWVREE IEIPEGVEVS VQGNTVKVKG PKGEVERELF WPGVKIFVEG GKVVIYKDFP RRKDVAIVRT FKAHINNMIK GVTEGFTYK LKVVYSHFPI TVKVQGDEVI IENFLGEKAP RRAKILPGVT VKVKGQEIIV EGIDKEAVGQ TAANIEQATR I TKWDRRVF QDGIYIVEKA GKPITF

UniProtKB: Large ribosomal subunit protein uL6

+
Macromolecule #54: Large ribosomal subunit protein eL30

MacromoleculeName: Large ribosomal subunit protein eL30 / type: protein_or_peptide / ID: 54 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 10.751579 KDa
SequenceString:
MDLAFELRKA LETGKVILGS NETIRLAKTG GAKLIIVAKN APKEIKDDIY YYAKLSDIPV YEFEGTSVEL GTLLGKPFVV ASLAIVDPG ESRILALAKR

UniProtKB: Large ribosomal subunit protein eL30

+
Macromolecule #55: Large ribosomal subunit protein eL18

MacromoleculeName: Large ribosomal subunit protein eL18 / type: protein_or_peptide / ID: 55 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 13.839259 KDa
SequenceString:
MKRTGPTDPN LRRLIRYLRK KSNEEKVKIW KDIAWRLERP RRQRAEVNVS RINRYAKDGD MIVVPGSVLG AGKIEKKVIV AAWKFSETA RRKIEEAGGE AITIEELIKR NPKGSGVIIM E

UniProtKB: Large ribosomal subunit protein eL18

+
Macromolecule #56: Large ribosomal subunit protein eL15

MacromoleculeName: Large ribosomal subunit protein eL15 / type: protein_or_peptide / ID: 56 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 22.657898 KDa
SequenceString: MGMYKYIREA WKSPKKSYVG QLLKQRMIKW RREPAVVRIE RPTRLDRARA LGYQAKQGYV IVRVRVRRGG RKRPRWKGGR KPSKMGQVK YSPKKSLQWI AEEKAARKFP NLEVLNSYWV GEDGMYKWFE VIMVDPHHPV IKSDPKIAWI ALKHHKGRVF R GLTSAGKK ...String:
MGMYKYIREA WKSPKKSYVG QLLKQRMIKW RREPAVVRIE RPTRLDRARA LGYQAKQGYV IVRVRVRRGG RKRPRWKGGR KPSKMGQVK YSPKKSLQWI AEEKAARKFP NLEVLNSYWV GEDGMYKWFE VIMVDPHHPV IKSDPKIAWI ALKHHKGRVF R GLTSAGKK GRGLRNKGKG AEKIRPSIRA NEGKGK

UniProtKB: Large ribosomal subunit protein eL15

+
Macromolecule #57: Large ribosomal subunit protein uL22

MacromoleculeName: Large ribosomal subunit protein uL22 / type: protein_or_peptide / ID: 57 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 17.834744 KDa
SequenceString:
MGRRFDYSFQ NFDPERMARA SGRDLRISPK LAVEVCRELR GMMLNDALRY LDDVIALRRP VPLKRYNDSQ GHKPGKGFGP GRYPVKVAK AIKKVLLNAQ NNAKQKGLDP DKLRIIHIAA HRGPVLRGWY PRAFGRPTPF NEQTTHIEVV VEEVRR

UniProtKB: Large ribosomal subunit protein uL22

+
Macromolecule #58: Large ribosomal subunit protein eL34

MacromoleculeName: Large ribosomal subunit protein eL34 / type: protein_or_peptide / ID: 58 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 10.93541 KDa
SequenceString:
MKPMYRSRSW RRKYVRTPGG RVVIHFERRK PKIAHCAICG RPLNGIPRGR PVEMRKLPKT KKRPERPYPH LCPKCMRRVM KEQVRAQIM KG

UniProtKB: Large ribosomal subunit protein eL34

+
Macromolecule #59: Large ribosomal subunit protein uL16

MacromoleculeName: Large ribosomal subunit protein uL16 / type: protein_or_peptide / ID: 59 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 20.923336 KDa
SequenceString:
MALRPAKIDR YVDKPAYTRR EYIRGAPGPK ITIFDMGNPA GDFEFEVALH VSQPVQIRQN ALEAARQQVN RYLQKNVGRS NYHFKIRVY PFQVLRENPM ATGRKADRYG NGMRRPFGKP IGLAARLKKD QKVLSIRVNR QHLKFAIEGA RRAAMKFPVK C YYRIYDKE GNDVTTKILS QGL

UniProtKB: Large ribosomal subunit protein uL16

+
Macromolecule #60: Large ribosomal subunit protein eL40

MacromoleculeName: Large ribosomal subunit protein eL40 / type: protein_or_peptide / ID: 60 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 5.900039 KDa
SequenceString:
MARFPEAEAR IFKKYICLRC GATNPWGAEK CRKCGYKRLR PKAREPRGGG R

UniProtKB: Large ribosomal subunit protein eL40

+
Macromolecule #61: Large ribosomal subunit protein eL33

MacromoleculeName: Large ribosomal subunit protein eL33 / type: protein_or_peptide / ID: 61 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 9.755602 KDa
SequenceString:
MRIKGVVLSY RRSKENQHTN VMIIKPLNVN SREEASKLIG RLVIWKSPSG KLLKGKIVRV HGTKGAVRAR FEKGLPGQAL GDYVEII

UniProtKB: Large ribosomal subunit protein eL33

+
Macromolecule #62: Large ribosomal subunit protein uL14

MacromoleculeName: Large ribosomal subunit protein uL14 / type: protein_or_peptide / ID: 62 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 15.318956 KDa
SequenceString:
MAKKGAGATR GITPVRPTRA IPVGAYLTVA DNSGAKVIQV IGVVEYHGTR RRLASAGVGD MVVATVKKGR PDMRHQVVRA VIIRQRKEY RRLDGMRIKF EDNAAVIVTP EGVPRGTEIR GPVAREAAER WVRIGSIASI IV

UniProtKB: Large ribosomal subunit protein uL14

+
Macromolecule #63: Large ribosomal subunit protein eL20

MacromoleculeName: Large ribosomal subunit protein eL20 / type: protein_or_peptide / ID: 63 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 9.364035 KDa
SequenceString:
MNVKVFRVSG YFEKNGRKFK FTKEYRALKE EHVKELVYSD IGSKHKVKRR KIFIKEIKEI RPEEAEDIVV RRLSLEL

UniProtKB: Large ribosomal subunit protein eL20

+
Macromolecule #64: C2H2-type domain-containing protein

MacromoleculeName: C2H2-type domain-containing protein / type: protein_or_peptide / ID: 64 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 7.795481 KDa
SequenceString:
MVRLKAIIVR DRDGEEFLRC PRCGMVFKRR KDYIKHVNKA HGWLFGRGKP KGKRLKKKYS KLLSQ

UniProtKB: C2H2-type domain-containing protein

+
Macromolecule #65: Dehydrogenase

MacromoleculeName: Dehydrogenase / type: protein_or_peptide / ID: 65 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrococcus abyssi GE5 (archaea)
Molecular weightTheoretical: 44.583812 KDa
SequenceString: MVGIQVQEVM TDRYAKIDIN APLSEAIGII EKEDPDLILV FDDNVYKGVL TQDLIIRSHL KWDPTKAKVR DVYKPAPVVK PTDDLSHAA KLLLETDLRS LPVGENKAEI LGVISDMALL ERVVAEEFGK RKVEEFMTKD VITLGPDDTV AKALATMRDH G ISRIPVVD ...String:
MVGIQVQEVM TDRYAKIDIN APLSEAIGII EKEDPDLILV FDDNVYKGVL TQDLIIRSHL KWDPTKAKVR DVYKPAPVVK PTDDLSHAA KLLLETDLRS LPVGENKAEI LGVISDMALL ERVVAEEFGK RKVEEFMTKD VITLGPDDTV AKALATMRDH G ISRIPVVD EEGKLEGLVT LHDLIIRFIK PRFKAQYGEL AGEKIPPFSM KLREAMIKGV ITIMPEATIR EAVSTMKDNN ID GLVVVDE NNKVVGILTV KDLLLPISRM VEKEARFYLQ LGGDASALSE FTRERIINDI KRFVDGYADL LGNEGIIYLY IRR FNEKFR GVHLYQARMR VVTDRGVFIA RGETWGAIQA VHDAIRAIER QLLQKAELER DIRYAKRFIE KLELWR

UniProtKB: Dehydrogenase

+
Macromolecule #66: MAGNESIUM ION

MacromoleculeName: MAGNESIUM ION / type: ligand / ID: 66 / Number of copies: 244 / Formula: MG
Molecular weightTheoretical: 24.305 Da

+
Macromolecule #67: ZINC ION

MacromoleculeName: ZINC ION / type: ligand / ID: 67 / Number of copies: 13 / Formula: ZN
Molecular weightTheoretical: 65.409 Da

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

BufferpH: 7.5
VitrificationCryogen name: ETHANE

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Electron microscopy

MicroscopeTFS KRIOS
Image recordingFilm or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 40.0 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 0.8 µm / Nominal defocus min: 0.3 µm
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

+
Image processing

CTF correctionType: PHASE FLIPPING AND AMPLITUDE CORRECTION
Startup modelType of model: PDB ENTRY
PDB model - PDB ID:

7zag

Final reconstructionResolution.type: BY AUTHOR / Resolution: 2.1 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: PHENIX / Number images used: 207000
Initial angle assignmentType: ANGULAR RECONSTITUTION
Final angle assignmentType: MAXIMUM LIKELIHOOD
FSC plot (resolution estimation)

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Atomic model buiding 1

Initial modelChain - Source name: Other / Chain - Initial model type: other
Output model

PDB-9srd:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

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