[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 91 items for (author: patel & dj)

EMDB-49911:
LmuA_conformation 1
Method: single particle / : Chakravarti A, Zhang Z

EMDB-49915:
LmuA_conformation 2_assymetric
Method: single particle / : Chakravarti A, Zhang Z

EMDB-49922:
LmuABC_apo
Method: single particle / : Chakravarti A, Zhang Z

EMDB-49934:
LmuABC-DNA
Method: single particle / : Chakravarti A, Zhang Z

EMDB-48556:
Cryo-EM structure of KwaA tetramer with C2 symmetry
Method: single particle / : Zhang Z, Patel DJ

EMDB-48215:
Global structure of hCXCR4 and HIV-2 gp120
Method: single particle / : Zhang Z, Patel DJ

EMDB-48220:
CXCR4 tetramer bound to 4 CXCL12 dimers
Method: single particle / : Zhang Z, Patel DJ

EMDB-48182:
hCXCR4-CXCL12 complex with 1:1 stoichiometry
Method: single particle / : Zhang Z, Patel DJ

EMDB-48180:
human CXCR4 tetramer
Method: single particle / : Zhang Z, Patel DJ, Junyu X

EMDB-48219:
CXCR4-HIV-2/gp120-CD4
Method: single particle / : Zhang Z, Patel DJ

EMDB-48218:
cryoEM structure of hCXCR4 tetramer bound to HIV-2/gp120/V3 loop
Method: single particle / : Zhang Z, Patel DJ

EMDB-44559:
Apo form Mre11-Rad50 complex
Method: single particle / : Yu Y, Patel DJ

EMDB-49973:
Cryo-EM structure of Local KwaA-KwaB complex
Method: single particle / : Zhang Z, Patel DJ

EMDB-48562:
Cryo-EM structure of KwaA with C4 symmetry
Method: single particle / : Zhang Z, Patel DJ

EMDB-48564:
Cryo-EM structure of KwaA-KwaB complex
Method: single particle / : Zhang Z, Patel DJ

EMDB-48629:
Cryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assembly
Method: single particle / : Majumder P, Patel DJ

EMDB-48630:
Cryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assembly in the presence of NAD (ADPR modelled)
Method: single particle / : Majumder P, Patel DJ

EMDB-48639:
Cryo-EM structure of CRISPR-associated cA4 bound Cat1 Pentagonal filament assembly in the presence of NAD analog BAD
Method: single particle / : Majumder P, Patel DJ

EMDB-48698:
Cryo-EM structure of CRISPR-associated cA4 bound Cat1 Trigonal filament assembly
Method: single particle / : Majumder P, Patel DJ

EMDB-44558:
cryo EM structure of dsDNA bound Mre11-Rad50 complex
Method: single particle / : Yu Y, Patel DJ

EMDB-45241:
cryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in apo form
Method: single particle / : Majumder P, Patel DJ

EMDB-45244:
cryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in apo form with ATP (symmetric sites).
Method: single particle / : Majumder P, Patel DJ

EMDB-45245:
cryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in apo form with ATP (Asymmetric sites).
Method: single particle / : Majumder P, Patel DJ

EMDB-45277:
cryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in cA4 bound form with ATP.
Method: single particle / : Majumder P, Patel DJ

EMDB-45466:
CryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in cA6 (partial density) bound form with ATP (partial density).
Method: single particle / : Majumder P, Patel DJ

EMDB-42497:
Spo11 core complex with gapped DNA
Method: single particle / : Yu Y, Patel DJ

EMDB-42501:
Spo11 core complex with hairpin DNA
Method: single particle / : Yu Y, Patel DJ

EMDB-40480:
TUBB4B and TUBA1A Heterodimer from Human Respiratory Doublet Microtubules
Method: single particle / : Anderson JR, Gui M, Brown A

EMDB-41097:
cryoEM structure of Smc5/6 5mer
Method: single particle / : Yu Y, Patel DJ

EMDB-41098:
Smc5/6 8mer
Method: single particle / : Yu Y, Patel DJ

EMDB-26140:
ATP and DNA bound SMC5/6 core complex
Method: single particle / : Yu Y, Patel DJ

EMDB-24794:
GLP-1 receptor bound with Pfizer small molecule agonist
Method: single particle / : Liu Y, Dias JM

EMDB-24292:
Cryo-EM structure of DNMT5 in apo state
Method: single particle / : Wang J, Patel DJ

EMDB-24294:
Cryo-EM structure of DNMT5 binary complex with hemimethylated DNA
Method: single particle / : Wang J, Patel DJ

EMDB-24295:
Cryo-EM structure of DNMT5 quaternary complex with hemimethylated DNA, AMP-PNP and SAH
Method: single particle / : Wang J, Patel DJ

EMDB-25577:
Cryo-EM structure of DNMT5 pseudo-ternary complex solved by incubation with hemimethylated DNA and SAM
Method: single particle / : Wang J, Patel DJ

EMDB-25164:
Cryo-EM structure of AdnA-AdnB(W325A) in complex with DNA and AMPPNP
Method: single particle / : Wang J, Warren GM

EMDB-23517:
Nse5-6 complex
Method: single particle / : Yu Y, Li SB

EMDB-23345:
Cryo-EM structure of Mycobacterium smegmatis Lhr helicase C-terminal domain
Method: single particle / : Wang J, Warren GM

EMDB-23244:
Structure of human SHLD2-SHLD3-REV7-TRIP13(E253Q) complex
Method: single particle / : Xie W, Patel DJ

EMDB-30767:
Cryo-EM structure of LshCas13a-crRNA-anti-tag RNA complex
Method: single particle / : Wang B, Zhang T

EMDB-30453:
NSD2 bearing E1099K/T1150A dual mutation in complex with 187-bp NCP
Method: single particle / : Li W, Tian W

EMDB-30455:
NSD3 bearing E1181K/T1232A dual mutation in complex with 187-bp NCP (1:1 binding mode)
Method: single particle / : Li W, Tian W

EMDB-30456:
NSD3 bearing E1181K/T1232A dual mutation in complex with 187-bp NCP (2:1 binding mode)
Method: single particle / : Li W, Tian W

EMDB-30457:
Native NSD3 bound to 187-bp nucleosome
Method: single particle / : Li W, Tian W

EMDB-21366:
Cryo-EM structure of AcrVIA1-Cas13(crRNA) complex
Method: single particle / : Jia N, Meeske AJ

EMDB-21367:
Cryo-EM structure of Cas13(crRNA)
Method: single particle / : Jia N, Meeske AJ

EMDB-21126:
Cryo-EM structure of Cascade-TniQ binary complex
Method: single particle / : Jia N, Patel DJ

EMDB-21146:
Cryo-EM structure of Cascade-TniQ-dsDNA ternary complex
Method: single particle / : Jia N, Patel DJ

EMDB-20440:
Cryo-EM structure of AdnA(D934A)-AdnB(D1014A) in complex with AMPPNP
Method: single particle / : Jia N, Unciuleac M, Shuman S, Patel DJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more