[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,509 items for (author: nji & e)

EMDB-65364:
Cryo-EM structure of the human measles virus RNA-dependent RNA polymerase complex bound to viral protein C
Method: single particle / : Du T, Wang J, Wu S, Ru H

EMDB-65365:
Cryo-EM structure of the human measles virus RNA-dependent RNA polymerase
Method: single particle / : Du T, Wang J, Wu S, Ru H

EMDB-65366:
Cryo-EM structure of the human measles virus RNA-dependent RNA polymerase complex
Method: single particle / : Du T, Wang J, Wu S, Ru H

EMDB-65367:
Cryo-EM structure of the human measles virus RNA-dependent RNA polymerase bound to allosteric inhibitor ERDRP-0519
Method: single particle / : Du T, Wang J, Wu S, Ru H

EMDB-65368:
Cryo-EM structure of the Nipah virus RNA-dependent RNA polymerase complex bound to allosteric inhibitor ERDRP-0519
Method: single particle / : Du T, Wang J, Wu S, Ru H

PDB-9vui:
Cryo-EM structure of the human measles virus RNA-dependent RNA polymerase complex bound to viral protein C
Method: single particle / : Du T, Wang J, Wu S, Ru H

PDB-9vuj:
Cryo-EM structure of the human measles virus RNA-dependent RNA polymerase
Method: single particle / : Du T, Wang J, Wu S, Ru H

PDB-9vuk:
Cryo-EM structure of the human measles virus RNA-dependent RNA polymerase complex
Method: single particle / : Du T, Wang J, Wu S, Ru H

PDB-9vul:
Cryo-EM structure of the human measles virus RNA-dependent RNA polymerase bound to allosteric inhibitor ERDRP-0519
Method: single particle / : Du T, Wang J, Wu S, Ru H

PDB-9vum:
Cryo-EM structure of the Nipah virus RNA-dependent RNA polymerase complex bound to allosteric inhibitor ERDRP-0519
Method: single particle / : Du T, Wang J, Wu S, Ru H

EMDB-69005:
Cannabinoid Receptor 1-Gi Complex
Method: single particle / : Liao Y, Zhang Y

EMDB-69006:
Cannabinoid Receptor 1-Gi Complex
Method: single particle / : Liao Y, Zhang Y

PDB-23iv:
Cannabinoid Receptor 1-Gi Complex
Method: single particle / : Liao Y, Zhang Y

PDB-23iw:
Cannabinoid Receptor 1-Gi Complex
Method: single particle / : Liao Y, Zhang Y

EMDB-65252:
Structure of plant diacylglycerol O-acyltransferase 1
Method: single particle / : Liu XY, Li JJ, Song DF, Liu ZF

EMDB-75840:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

PDB-11mr:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

EMDB-65167:
Structure of plant diacylglycerol O-acyltransferase 1
Method: single particle / : Liu XY, Li JJ, Song DF, Liu ZF

EMDB-75020:
ssRNA phage PRR1 virion with 3' gRNA
Method: single particle / : Lill ZR, Zhang J

PDB-9zzy:
ssRNA phage PRR1 virion with 3' gRNA
Method: single particle / : Lill ZR, Zhang J

EMDB-62992:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1 top)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-63000:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-63002:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-65164:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1 top)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-65166:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-65168:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

PDB-9ld2:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

PDB-9ldj:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

PDB-9vls:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

PDB-9vlt:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-75038:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

PDB-10ay:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

EMDB-64966:
Cryo-EM structure of semi-closed state of Botulinum neurotoxin serotype A at pH 7.4
Method: single particle / : Zerang Z, Liu Z, He J, Wang X, Qi F, Lei D, Zhi D, Wang D

PDB-9vcs:
Cryo-EM structure of semi-closed state of Botulinum neurotoxin serotype A at pH 7.4
Method: single particle / : Zerang Z, Liu Z, He J, Wang X, Qi F, Lei D, Zhi D, Wang D

EMDB-63277:
Cryo-EM structure of rice PHS1-DPE1 complex
Method: single particle / : Jian L, Junjie Y

PDB-9lpw:
Cryo-EM structure of rice PHS1-DPE1 complex
Method: single particle / : Jian L, Junjie Y

EMDB-63686:
cryo-EM structure of a catalytic inactive mutant(R709A) of PHS1 dimer
Method: single particle / : Liu J, Yan J

EMDB-63687:
cryo-EM structure of a catalytic inactive mutant(D391A) of DPE1 dimer
Method: single particle / : Liu J, Yan J

EMDB-63688:
cryo-EM structure of maltose and glucose bound rice PHS1(R709A)-DPE1(D391A) complex
Method: single particle / : Liu J, Yan J

EMDB-63955:
Structure of ASC-PYD filament from condensates
Method: single particle / : Gao P, Li QJ, Li ZL

PDB-9u8k:
Structure of ASC-PYD filament from condensates
Method: single particle / : Gao P, Li QJ, Li ZL

EMDB-62738:
Structure of human apo Taurine Transporter in the inward-open conformation
Method: single particle / : Wu JX, Qi Y

EMDB-62739:
Structure of human apo Taurine Transporter in the inward-occluded conformation
Method: single particle / : Wu JX, Qi Y

EMDB-62740:
Structure of taurine-bound human Taurine Transporter in the inward-occluded conformation
Method: single particle / : Wu JX, Qi Y

EMDB-62741:
Structure of beta-alanine-bound human Taurine Transporter in the inward-occluded conformation
Method: single particle / : Wu JX, Qi Y

EMDB-62742:
Structure of piperidine-4-sulfonic acid-bound human Taurine Transporter in the inward-open conformation
Method: single particle / : Wu JX, Qi Y

EMDB-62743:
Structure of piperidine-4-sulfonic acid-bound human Taurine Transporter in the inward-occluded conformation
Method: single particle / : Wu JX, Qi Y

PDB-9l19:
Structure of human apo Taurine Transporter in the inward-open conformation
Method: single particle / : Wu JX, Qi Y

PDB-9l1a:
Structure of human apo Taurine Transporter in the inward-occluded conformation
Method: single particle / : Wu JX, Qi Y

PDB-9l1b:
Structure of taurine-bound human Taurine Transporter in the inward-occluded conformation
Method: single particle / : Wu JX, Qi Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more