[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,760 items for (author: ning & w)

EMDB-62620:
Cryo-EM structure of SARS-CoV-2 RBD in complex with ACE2 and mAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q, Xia N

EMDB-65522:
Cryo-EM structure of a 1C4 SpyTag-SpyCatcher mi3 nanoparticle
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

EMDB-65523:
Cryo-EM structure of SARS-CoV-2 WT spike protein in complex with nAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

PDB-9kwy:
Cryo-EM structure of SARS-CoV-2 RBD in complex with ACE2 and mAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

PDB-9w14:
Cryo-EM structure of SARS-CoV-2 WT spike protein in complex with nAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

EMDB-54401:
State 2 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to proximal upstream H3
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9rze:
State 2 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to proximal upstream H3
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-62786:
Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-62788:
Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-67440:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with macrocyclic peptide 6L3 (All RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67548:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with a macrocyclic peptide 6L3-3P11K (Two RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67549:
Cryo-EM map of SARS-CoV-2 PT Spike Protein,Three RBDs down
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67568:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein (Three RBDs down)
Method: single particle / : Wang M, Peng Q, Yang JY, Luo H, Shi Y

PDB-9l3i:
Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

PDB-9l3q:
Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-55442:
mouse hippocampal CA1-sr synapse tomogram: CA1-sr dataset 2
Method: electron tomography / : Glynn C, Smith JLR

EMDB-63503:
antibody 20G5 Fab in complex with human B7-H3 (IgC)
Method: single particle / : Bin L, Shuaixiang Z, kaijie H

EMDB-63505:
antibody 20G5 (Fab')2 in complex with human B7-H3
Method: single particle / : Li B, Zhou S, He K

PDB-9ly5:
antibody 20G5 Fab in complex with human B7-H3 (IgC)
Method: single particle / : Bin L, Shuaixiang Z, kaijie H

PDB-9ly6:
antibody 20G5 (Fab')2 in complex with human B7-H3
Method: single particle / : Li B, Zhou S, He K

EMDB-70223:
Cryo-EM structure of primidone-bound rabbit TRPM3 having 2 resting and 2 activated subunits (ortho position) at 18 degrees Celsius
Method: single particle / : Kumar S, Lu W, Du J

PDB-9o8d:
Cryo-EM structure of primidone-bound rabbit TRPM3 having 2 resting and 2 activated subunits (ortho position) at 18 degrees Celsius
Method: single particle / : Kumar S, Lu W, Du J

EMDB-70260:
Human MPC1-2 Complex
Method: single particle / : Qi X, Sun Y, Wang Y

EMDB-67802:
Structure of the flotillin complex in situ
Method: subtomogram averaging / : Lu M, Gao N

EMDB-51382:
Human 80S ribosome in complex with NatA in distal position and Ebp1
Method: single particle / : Klein MA, Wild K, Sinning I

EMDB-51383:
Human 80S ribosome in complex with NatA in proximal and distal position
Method: single particle / : Klein MA, Wild K, Sinning I

PDB-9gj5:
Human 80S ribosome in complex with NatA in distal position and Ebp1
Method: single particle / : Klein MA, Wild K, Sinning I

PDB-9gj6:
Human 80S ribosome in complex with NatA in proximal and distal position
Method: single particle / : Klein MA, Wild K, Sinning I

EMDB-66358:
Cryo-EM structure of TMEM63A-digitonin-cholesterol
Method: single particle / : Lin Y, Zhou Z, Han Y, Cheng D, Wang H, Ju L, Zhang Y, Cox DC, Corry B

PDB-9wxv:
Cryo-EM structure of TMEM63A-digitonin-cholesterol
Method: single particle / : Lin Y, Zhou Z, Han Y, Cheng D, Wang H, Ju L, Zhang Y, Cox DC, Corry B

EMDB-64674:
Cryo-EM structure of Gq-coupled PrRPR in complex with GUB08248
Method: single particle / : Zhao L, Li X, Li S, Yuan Q, Xu HE

EMDB-64675:
Local refinement map of Gq-coupled PrRPR in complex with GUB08248
Method: single particle / : Zhao L, Li X, Li S, Yuan Q, Xu HE

EMDB-64678:
Consensus map of Gq-coupled PrRPR in complex with GUB08248
Method: single particle / : Zhao L, Li X, Li S, Yuan Q, Xu HE

EMDB-64686:
Consensus map of Gi-coupled NPFF2R in complex with GUB08248
Method: single particle / : Zhao L, Li X, Li S, Yuan Q

EMDB-64690:
Local refinement map of Gi-coupled NPFF2R in complex with GUB08248
Method: single particle / : Zhao L, Li X, Li S, Yuan Q

EMDB-64693:
Cryo-EM structure of Gi-coupled NPFF2R in complex with GUB08248
Method: single particle / : Zhao L, Li X, Li S, Yuan Q

PDB-9v0x:
Cryo-EM structure of Gq-coupled PrRPR in complex with GUB08248
Method: single particle / : Zhao L, Li X, Li S, Yuan Q, Xu HE

PDB-9v1h:
Cryo-EM structure of Gi-coupled NPFF2R in complex with GUB08248
Method: single particle / : Zhao L, Li X, Li S, Yuan Q

EMDB-67108:
Cryo-EM structure of Receptor of GPR75
Method: single particle / : Wu C, Yuan Q

EMDB-67109:
The cryo_EM structure of GPR75 complex
Method: single particle / : Wu C, Yuan Q

EMDB-67110:
A composite Cryo-EM structure of GPR75
Method: single particle / : Yuan Q, Wu C

EMDB-67119:
Cryo-EM structure of apo form of GPR75-bRIL-Fab complex
Method: single particle / : Wu C, Yuan Q

PDB-9xqc:
A composite Cryo-EM structure of GPR75
Method: single particle / : Yuan Q, Wu C

PDB-9xqn:
Cryo-EM structure of apo form of GPR75-bRIL-Fab complex
Method: single particle / : Wu C, Yuan Q

EMDB-66145:
Cryo-EM structure of the apo-ConsOR5-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

PDB-9wpm:
Cryo-EM structure of the apo-ConsOR5-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

EMDB-63174:
Cryo-EM structure of the receptor of PL45-Olfr110-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

EMDB-63175:
Cryo-EM structure of the receptor of PL45-Olfr110-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

PDB-9lkb:
Cryo-EM structure of the receptor of PL45-Olfr110-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

PDB-9lkd:
Cryo-EM structure of the receptor of PL45-Olfr110-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more