[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 784 items for (author: nina & m)

EMDB-69590:
Structural basis of influenza A virus neutralization by broadly active single-domain antibody G2.3 recognizing glycosylated epitope within hemagglutinin stem
Method: single particle / : Ilyasov IO, Baymukhametov TN, Voronina DV, Vorobiev II, Khodak YA, Burtseva AD, Popov VO, Sluchanko NN, Shcheblyakov DV, Boyko KM

PDB-24kr:
Structural basis of influenza A virus neutralization by broadly active single-domain antibody G2.3 recognizing glycosylated epitope within hemagglutinin stem
Method: single particle / : Ilyasov IO, Baymukhametov TN, Voronina DV, Vorobiev II, Khodak YA, Burtseva AD, Popov VO, Sluchanko NN, Shcheblyakov DV, Boyko KM

EMDB-71013:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 1 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71014:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 2 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71015:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 3 with disordered DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71016:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 1 with sharply bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71017:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 2 with less bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71018:
Cryo-EM map of the E. coli clamp loader DnaX-complex alone
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71021:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 1 the DNA recognition state
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71022:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 1 with fully open clamp and unsettled DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71023:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 2 with fully open clamp and settled DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71024:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 3 with partially closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71025:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 4 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71026:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 5 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71027:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 6 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyb:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 1 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyc:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 2 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyd:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 3 with disordered DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oye:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 1 with sharply bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyf:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 2 with less bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyg:
Structure of the E. coli clamp loader DnaX-complex alone
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyh:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 1 the DNA recognition state
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyi:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 1 with fully open clamp and unsettled DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyj:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 2 with fully open clamp and settled DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyk:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 3 with partially closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyl:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 4 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oym:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 5 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyn:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 6 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-70956:
In situ microtubule structure in the axon of a human neuron
Method: helical / : Zehr EA, Sun S, Roll-Mecak A

PDB-9ox7:
In situ microtubule structure in the axon of a human neuron
Method: helical / : Zehr EA, Sun S, Roll-Mecak A

EMDB-51382:
Human 80S ribosome in complex with NatA in distal position and Ebp1
Method: single particle / : Klein MA, Wild K, Sinning I

EMDB-51383:
Human 80S ribosome in complex with NatA in proximal and distal position
Method: single particle / : Klein MA, Wild K, Sinning I

PDB-9gj5:
Human 80S ribosome in complex with NatA in distal position and Ebp1
Method: single particle / : Klein MA, Wild K, Sinning I

PDB-9gj6:
Human 80S ribosome in complex with NatA in proximal and distal position
Method: single particle / : Klein MA, Wild K, Sinning I

EMDB-55527:
Early Expressome Composite Map of TEC and 30S IC
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55528:
Early Expressome Consensus Refinement
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55529:
Early Expressome RNAP/TEC body
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55530:
E. coli 30S IC containing mRNA, IF1 and IF3
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55531:
E. coli 30S IC containing mRNA, initiator tRNA, IF1 and IF2
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-71766:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

EMDB-71767:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71772:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71781:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71782:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pni:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

PDB-9pnn:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pnu:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq2:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq3:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-53487:
human FAM118B trimeric filament
Method: single particle / : Baretic D, Missoury S, Patel K, Coste F, Delarue M, Suskiewicz JM, Ahel I

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more