[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 253 items for (author: nian & y)

EMDB-29675:
A Vibrio cholerae viral satellite enables efficient horizontal transfer by using an external scaffold to assemble hijacked coat proteins into small capsids
Method: single particle / : Subramanian S, Boyd CM, Seed KD, Parent KN

PDB-8g1r:
A Vibrio cholerae viral satellite enables efficient horizontal transfer by using an external scaffold to assemble hijacked coat proteins into small capsids
Method: single particle / : Subramanian S, Boyd CM, Seed KD, Parent KN

EMDB-41374:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41382:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41399:
Antibody N3-1 bound to SARS-CoV-2 spike
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tm1:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tma:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-18498:
Cryo-EM structure of the benzo[a]pyrene-bound Hsp90-XAP2-AHR complex
Method: single particle / : Kwong HS, Grandvuillemin L, Sirounian S, Ancelin A, Lai-Kee-Him J, Carivenc C, Lancey C, Ragan TJ, Hesketh EL, Bourguet W, Gruszczyk J

PDB-8qmo:
Cryo-EM structure of the benzo[a]pyrene-bound Hsp90-XAP2-AHR complex
Method: single particle / : Kwong HS, Grandvuillemin L, Sirounian S, Ancelin A, Lai-Kee-Him J, Carivenc C, Lancey C, Ragan TJ, Hesketh EL, Bourguet W, Gruszczyk J

EMDB-42399:
Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp and DNA
Method: single particle / : Huang Y, Marcus K, Subramanian S, Gee LC, Gorday K, Ghaffari-Kashani S, Luo X, Zhang L, O'Donnell M, Kuriyan J

EMDB-42402:
Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp
Method: single particle / : Huang Y, Marcus K, Subramanian S, Gee LC, Gorday K, Ghaffari-Kashani S, Luo X, Zhang L, O'Donnell M, Kuriyan J

PDB-8unf:
Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp and DNA
Method: single particle / : Huang Y, Marcus K, Subramanian S, Gee LC, Gorday K, Ghaffari-Kashani S, Luo X, Zhang L, O'Donnell M, Subramanian S, Kuriyan J

PDB-8unh:
Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp
Method: single particle / : Huang Y, Marcus K, Subramanian S, Gee LC, Gorday K, Ghaffari-Kashani S, Luo X, Zhang L, O'Donnell M, Subramanian S, Kuriyan J

EMDB-41265:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (parallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

EMDB-41266:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (antiparallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

PDB-8thi:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (parallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

PDB-8thj:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (antiparallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-36294:
Legionella effector protein SidI
Method: single particle / : Wang L, Subramanian A, Mukherjee S, Walter P

PDB-8jhu:
Legionella effector protein SidI
Method: single particle / : Wang L, Subramanian A, Mukherjee S, Walter P

EMDB-17172:
Ternary structure of intramolecular bivalent glue degrader IBG1 bound to BRD4 and DCAF16:DDB1deltaBPB
Method: single particle / : Cowan AD, Sundaramoorthy R, Nakasone MA, Ciulli A

PDB-8ov6:
Ternary structure of intramolecular bivalent glue degrader IBG1 bound to BRD4 and DCAF16:DDB1deltaBPB
Method: single particle / : Cowan AD, Sundaramoorthy R, Nakasone MA, Ciulli A

EMDB-16799:
Cryo-EM structure of the NINJ1 filament
Method: helical / : Degen MD, Hiller SH, Maier TM

PDB-8cqr:
Cryo-EM structure of the NINJ1 filament
Method: helical / : Degen MD, Hiller SH, Maier TM

EMDB-27548:
Cryo-EM structure of skeletal muscle alpha-actin
Method: helical / : Arora AS, Huang HL, Heissler SM, Chinthalapudi K

EMDB-27549:
Cryo-EM structure of cardiac muscle alpha-actin
Method: single particle / : Arora AS, Huang HL, Heissler SM, Chinthalapudi K

EMDB-27565:
Cryo-EM structure of nonmuscle gamma-actin
Method: single particle / : Arora AS, Huang HL, Heissler SM, Chinthalapudi K

EMDB-27572:
Cryo-EM structure of nonmuscle beta-actin
Method: single particle / : Arora AS, Huang HL, Heissler SM, Chinthalapudi K

PDB-8dmx:
Cryo-EM structure of skeletal muscle alpha-actin
Method: helical / : Arora AS, Huang HL, Heissler SM, Chinthalapudi K

PDB-8dmy:
Cryo-EM structure of cardiac muscle alpha-actin
Method: single particle / : Arora AS, Huang HL, Heissler SM, Chinthalapudi K

PDB-8dnf:
Cryo-EM structure of nonmuscle gamma-actin
Method: single particle / : Arora AS, Huang HL, Heissler SM, Chinthalapudi K

PDB-8dnh:
Cryo-EM structure of nonmuscle beta-actin
Method: single particle / : Arora AS, Huang HL, Heissler SM, Chinthalapudi K

EMDB-26160:
Structure of human serotonin transporter bound to small molecule '8090 in lipid nanodisc and NaCl
Method: single particle / : Singh I, Seth A

PDB-7txt:
Structure of human serotonin transporter bound to small molecule '8090 in lipid nanodisc and NaCl
Method: single particle / : Singh I, Seth A, Billesboelle CB, Braz J, Rodriguiz RM, Roy K, Bekele B, Craik V, Huang XP, Boytsov D, Lak P, O'Donnell H, Sandtner W, Roth BL, Basbaum AI, Wetsel WC, Manglik A, Shoichet BK, Rudnick G

EMDB-15775:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in a nanodisc
Method: single particle / : Davies JS, North RA, Dobson RCJ

PDB-8b01:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in a nanodisc
Method: single particle / : Davies JS, North RA, Dobson RCJ

EMDB-15606:
CryoEM structure of the human Nucleophosmin 1 core
Method: single particle / : Valentin Gese G, Hallberg BM

PDB-8as5:
CryoEM structure of the human Nucleophosmin 1 core
Method: single particle / : Valentin Gese G, Hallberg BM

EMDB-34649:
SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 1 YB9-258 Fab (1 RBD up)
Method: single particle / : Liu B, Gao X, Chen Q, Li Z, Su M, He J, Xiong X

EMDB-34650:
SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 2 YB9-258 Fabs (2 RBD up)
Method: single particle / : Liu B, Gao X, Chen Q, Li Z, Su M, He J, Xiong X

EMDB-34651:
SARS-CoV-2 wildtype spike trimer (6P) in complex with 3 YB9-258 Fabs and 3 R1-32 Fabs (3 RBD up)
Method: single particle / : Liu B, Gao X, Chen Q, Li Z, Su M, He J, Xiong X

EMDB-34652:
SARS-CoV-2 wildtype S1 in complex with YB9-258 Fab and R1-32 Fab
Method: single particle / : Liu B, Gao X, Chen Q, Li Z, Su M, He J, Xiong X

EMDB-34653:
SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with YB9-258 Fab, focused refinement of Fab region
Method: single particle / : Liu B, Gao X, Chen Q, Li Z, Su M, He J, Xiong X

EMDB-34654:
SARS-CoV-2 Omicron BA.1 spike trimer (6P) complex with YB9-258 Fab, focused refinement of RBD-dimer region
Method: single particle / : Liu B, Gao X, Chen Q, Li Z, Su M, He J, Xiong X

EMDB-34655:
SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with YB13-292 Fab, focused refinement of Fab region
Method: single particle / : Liu B, Gao X, Chen Q, Li Z, Su M, He J, Xiong X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more