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Showing all 50 items for (author: negishi & l)

EMDB-62427:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

PDB-9kmc:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

EMDB-61242:
Cryo-EM structure of native NCP-UV-DDB complex
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61243:
Cryo-EM structure of NCP-UV-DDB complex containing CPD
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61246:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-2
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61247:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-3
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61248:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-6
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

PDB-9j8w:
Cryo-EM structure of NCP-UV-DDB complex containing CPD
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-38604:
RNA polymerase II elongation complex with upstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-38607:
RNA polymerase II elongation complex with DSIF, SPT6, and ELOF1 transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-38624:
RNA polymerase II elongation complex transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-38717:
RNA polymerase II elongation complex with downstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xrj:
RNA polymerase II elongation complex with upstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xrm:
RNA polymerase II elongation complex with DSIF, SPT6, and ELOF1 transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xso:
RNA polymerase II elongation complex transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xvs:
RNA polymerase II elongation complex with downstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-63078:
Cryo-EM structure of the native HeLa nucleosome
Method: single particle / : Hatazawa S, Takizawa Y, Kurumizaka H

EMDB-63079:
Cryo-EM structure of the native HeLa nucleosome in poly-nucleosomes (class 1)
Method: single particle / : Hatazawa S, Takizawa Y, Kurumizaka H

EMDB-63080:
Cryo-EM structure of the native HeLa nucleosome in poly-nucleosomes (class 2)
Method: single particle / : Hatazawa S, Takizawa Y, Kurumizaka H

EMDB-63081:
Cryo-EM structure of the native HeLa nucleosome in poly-nucleosomes (class 3)
Method: single particle / : Hatazawa S, Takizawa Y, Kurumizaka H

EMDB-63144:
Subtomogram average of the HeLa nucleosome
Method: subtomogram averaging / : Hatazawa S, Fukuda Y, Takizawa Y, Kurumizaka H

EMDB-63145:
Subtomogram average of the HeLa nucleosome for mapping back
Method: subtomogram averaging / : Hatazawa S, Fukuda Y, Takizawa Y, Kurumizaka H

EMDB-37121:
Structure of nucleosome complexed with one DEK molecule
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-37149:
Structure of H1.2 bound to the nucleosome
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8kd1:
Structure of nucleosome complexed with one DEK molecule
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8ke0:
Structure of H1.2 bound to the nucleosome
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-37115:
Structure of nucleosome complexed with two DEK molecules
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38443:
193 bp Widom601L nucleosome (closed)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38444:
193 bp Widom601L nucleosome (middle)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38445:
193 bp Widom601L nucleosome (open)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8kcy:
Structure of nucleosome complexed with two DEK molecules
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-36083:
Cryo-EM structure of DDM1-nucleosome complex
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

EMDB-36084:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana histones
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

EMDB-36085:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana H2A.W
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

PDB-8j90:
Cryo-EM structure of DDM1-nucleosome complex
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

PDB-8j91:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana histones
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

PDB-8j92:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana H2A.W
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

EMDB-32373:
Cryo-EM structure of nucleosome in complex with p300 acetyltransferase catalytic core (complex I)
Method: single particle / : Hatazawa S, Liu J, Takizawa Y, Zandian M, Negishi L, Kutateladze TG, Kurumizaka H

EMDB-32374:
Cryo-EM structure of nucleosome in complex with p300 acetyltransferase catalytic core (complex II)
Method: single particle / : Hatazawa S, Liu J, Takizawa Y, Zandian M, Negishi L, Kutateladze TG, Kurumizaka H

EMDB-32375:
Cryo-EM structure of nucleosome in complex with p300 acetyltransferase catalytic core (complex III)
Method: single particle / : Hatazawa S, Liu J, Takizawa Y, Zandian M, Negishi L, Kutateladze TG, Kurumizaka H

EMDB-32376:
Cryo-EM structure of nucleosome in complex with p300 acetyltransferase catalytic core (complex IV)
Method: single particle / : Hatazawa S, Liu J, Takizawa Y, Zandian M, Negishi L, Kutateladze TG, Kurumizaka H

PDB-7w9v:
Cryo-EM structure of nucleosome in complex with p300 acetyltransferase catalytic core (complex I)
Method: single particle / : Hatazawa S, Liu J, Takizawa Y, Zandian M, Negishi L, Kutateladze TG, Kurumizaka H

EMDB-30631:
The mouse nucleosome structure containing H3mm18
Method: single particle / : Hirai S, Takizawa Y

EMDB-31882:
The mouse nucleosome structure containing H3mm18 aided by PL2-6 scFv
Method: single particle / : Hirai S, Takizawa Y

PDB-7dbh:
The mouse nucleosome structure containing H3mm18
Method: single particle / : Hirai S, Takizawa Y, Kujirai T, Kurumizaka H

PDB-7vbm:
The mouse nucleosome structure containing H3mm18 aided by PL2-6 scFv
Method: single particle / : Hirai S, Takizawa Y, Kujirai T, Kurumizaka H

EMDB-30267:
Human cGAS-nucleosome complex
Method: single particle / : Kujirai T, Zierhut C

PDB-7c0m:
Human cGAS-nucleosome complex
Method: single particle / : Kujirai T, Zierhut C, Takizawa Y, Kim R, Negishi L, Uruma N, Hirai S, Funabiki H, Kurumizaka H

EMDB-30070:
Nucleosome with LIN28B distal enhancer DNA sequence
Method: single particle / : Echigoya K, Koyama M, Takizawa Y, Kurumizaka H

EMDB-9802:
Nucleosome bound to C-terminal ELYS fragment
Method: single particle / : Kobayashi W, Takizawa Y, Aihara M, Negishi L, Ishii H, Kurumizaka H

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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