[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 218 items for (author: nanda & v)

EMDB-55722:
Tilvestamab Fab bound to the anti-Fab nanobody
Method: single particle / : Lopez AJ, Christakou E, Kursula P

PDB-9t9m:
Tilvestamab Fab bound to the anti-Fab nanobody
Method: single particle / : Lopez AJ, Christakou E, Kursula P

EMDB-70338:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

EMDB-71715:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71727:
West Nile virus E protein
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71728:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9od2:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

PDB-9pl9:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9pm6:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-52450:
Structure of Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase embedded in nanodisc
Method: single particle / : Mim C, Zhang Q, Murthy AV

EMDB-52451:
Structure of the Cytochrome o ubiquinol oxidase embedded in the nanodisc
Method: single particle / : Mim C, Zhang Q, Murthy AV

EMDB-52452:
Structure of the co-purified multidrug transporter subunit ACRB in nandisc
Method: single particle / : Mim C, Zhang Q, Murthy AV

PDB-9hwj:
Structure of Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase embedded in nanodisc
Method: single particle / : Mim C, Zhang Q, Murthy AV

PDB-9hwk:
Structure of the Cytochrome o ubiquinol oxidase embedded in the nanodisc
Method: single particle / : Mim C, Zhang Q, Murthy AV

PDB-9hwl:
Structure of the co-purified multidrug transporter subunit ACRB in nandisc
Method: single particle / : Mim C, Zhang Q, Murthy AV

EMDB-53417:
Human UPF1 in complex with the histone stem loop RNA
Method: single particle / : Machado de Amorim A, Loll B, Hilal T, Chakrabarti S

PDB-9qwn:
Human UPF1 in complex with the histone stem loop RNA
Method: single particle / : Machado de Amorim A, Loll B, Hilal T, Chakrabarti S

EMDB-43718:
NU-refined consensus map of CXCL1-KSHV ORF74-Gi-scFv16 Complex
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-48095:
3DFlex refined map of CXCL1-KSHV ORF74-Gi-scFv16 Complex
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-48097:
Local refined cryoEM map of CXCL1-KSHV ORF74 region
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-48100:
Cryo-EM Structure of CXCL1-KSHV ORF74-Gi-scFv16 Complex
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

PDB-9ejc:
Cryo-EM Structure of CXCL1-KSHV ORF74-Gi-scFv16 Complex
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-43717:
Cryo-EM Structure of KSHV ORF74 Apo Dimer at 2.8A
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-43720:
Cryo-EM Map of KSHV ORF74-BRIL-BAK5-Nb complex at 3.7A
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

PDB-8w1a:
Cryo-EM Structure of KSHV ORF74 Apo Dimer at 2.8A
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-50436:
Cryo-EM Structure of Amyloid-beta Fibrils from Mouse Brain Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50437:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 1
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50438:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 2
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50439:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 3
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50440:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 4
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50441:
Cryo-EM Structure of Tau Filaments from Individuals Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50442:
Cryo-EM Structure of Amyloid-beta Fibrils from Individual Carrying the Uppsala AbetaUpp(1-42)delta(19-24) mutation
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

PDB-9fh1:
Cryo-EM Structure of Amyloid-beta Fibrils from Mouse Brain Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

PDB-9fh2:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 1
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

PDB-9fh3:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 2
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

PDB-9fh4:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 3
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

PDB-9fh5:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 4
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

PDB-9fh6:
Cryo-EM Structure of Tau Filaments from Individuals Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50098:
Initial 3D Map of relaxosome complex with oriT DNA ds-27_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50099:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_+8ds+9_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50102:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_-8ds-7_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50103:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_-13ds-12_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50104:
Initial 3D Map of relaxosome complex with oriT DNA ds-2_+113deltaTraM
Method: single particle / : Williams SM, Waksman G

EMDB-50105:
Initial 3D Map of relaxosome complex with oriT DNA ds-67_+113(poly-dT15-17_-3)deltaTraM
Method: single particle / : Williams SM, Waksman G

EMDB-50117:
CryoEM map of the F plasmid relaxosome in its pre-initiation state. ds-27_+143-R Locally-refined Map 3.76 A
Method: single particle / : Williams SM, Waksman G

EMDB-50118:
CryoEM map of the F plasmid relaxosome with TraI in its TE mode. ss-27_+8ds+9_+143-R Locally-refined 3.45 A Map
Method: single particle / : Williams SM, Waksman G

EMDB-50119:
CryoEM map of the F plasmid relaxosome with truncated TraI1-863 in its TE mode. ss-27_+8ds+9_+143-R_deltaAH+CTD Locally-refined 3.42 A Map
Method: single particle / : Williams SM, Waksman G

EMDB-50120:
CryoEM map of the F plasmid relaxosome with TraI in its TE mode, without accessory protein TraM. ss-27_+8ds+9_+143-R_deltaTraM Locally-refined 2.94 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-50121:
CryoEM map of the F plasmid relaxosome with oriT DNA ss-27_+3ds+4_+143 and TraI in its TE mode. ss-27_+3ds+4_+143-R Locally-refined 3.68 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-50122:
CryoEM map of the F plasmid relaxosome with oriT DNA ss-27_-3ds-2_+143 and TraI in its TE mode. ss-27_-3ds-2_+143-R Locally-refined 3.42 A Map.
Method: single particle / : Williams SM, Waksman G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more