[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,591 items for (author: martin & ag)

EMDB-54904:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54905:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54925:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

EMDB-55037:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55097:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55099:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

EMDB-55105:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-55115:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9shm:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9shn:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9si8:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

PDB-9sml:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9spv:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9spw:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

PDB-9sq0:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9sqq:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-76249:
Apo-IP3R2 Local Refinement of Ligand Binding Domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76250:
Apo-IP3R2 Local Refinement of ARM1-HD Domains
Method: single particle / : Serysehva II, Baker MR, Fan G

EMDB-76251:
Apo-IP3R2 Local Refinement of ARM2 Domain
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76252:
Apo-IP3R2 Local Refinement of ARM3-ILD-LNK domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76253:
Apo-IP3R2 Local Refinement of TM domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76254:
IP3R2 (+IP3/Ca2+/ATP) Local Refinement of Ligand Binding Domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76255:
IP3R2 (+IP3/Ca2+/ATP) Local Refinement of ARM1-HD domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76256:
IP3R2 (+IP3/Ca2+/ATP) Local Refinement of TM domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76257:
IP3R2 (+IP3/Ca2+/ATP) Local Refinement of ARM2 domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76258:
IP3R2 (+IP3/Ca2+/ATP) Local Refinement of ARM3-ILD-LNK domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76259:
Structure of mammalian Type 2 Inositol 1,4,5-trisphosphate receptors (IP3R2) in the Apo-state (composite map)
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76260:
Structure of mammalian Type 2 Inositol 1,4,5-trisphosphate receptors (IP3R2) in the Apo-state
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76262:
Structure of mammalian Type 2 Inositol 1,4,5-trisphosphate receptor (IP3R2)in the presence of IP3/Ca2+/ATP (Composite map)
Method: single particle / : Serysehva II, Baker MR, Fan G

EMDB-76264:
Structure of mammalian Type 2 Inositol 1,4,5-trisphosphate receptor (IP3R2) in the presence of IP3/Ca2+/ATP
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-73448:
Structure of Tau SF from LATE (case 1)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73449:
Structure of Tau PHF from LATE (case 1)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73450:
Structure of Tau CTE from LATE (case 1)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73451:
Structure of Tau SF from LATE (case 2)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73452:
Structure of Tau PHF from LATE (case 2)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73453:
Structure of Tau CTE from LATE (case 2)
Method: helical / : Rana JK, Mosalaganti S

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

EMDB-72009:
Q10M-055 Fab in complex with HIV-1 Env Q23 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-72031:
Q12QBM-007 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-72033:
Q9M-023 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-72035:
Q12BBM-069 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-74449:
Q7M-675 Fab in complex with HIV-1 Env WITO NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9py5:
Q10M-055 Fab in complex with HIV-1 Env Q23 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9pyd:
Q12QBM-007 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9pyh:
Q9M-023 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9pyk:
Q12BBM-069 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-72972:
AM12-340 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yhs:
AM12-340 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-58124:
In situ subtomogram average of a ribosome bound to ribosome associated vesicle in primary neurons expressing KDEL tagged with mNeonGreen (mNeon-KDEL)
Method: subtomogram averaging / : Carter SD, Jensen GJ, Freyberg Z

EMDB-72969:
AJ09-21 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more