[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 68 items for (author: mancia & f)

EMDB-49930:
Cryo-EM structure of the glycosyltransferase GtrB in the substrate-bound state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, Bhattacharjee B, di Muccio G, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

EMDB-49931:
Cryo-EM structure of the glycosyltransferase GtrB in the pre-catalysis and product-bound state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

EMDB-49932:
Cryo-EM structure of the glycosyltransferase GtrB in the apo state (octamer volume)
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

EMDB-49933:
Cryo-EM structure of the glycosyltransferase GtrB (tetramer volume)
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

EMDB-49935:
Cryo-EM structure of the glycosyltransferase GtrB in the pre-intermediate state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

PDB-9nyc:
Cryo-EM structure of the glycosyltransferase GtrB in the substrate-bound state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, Bhattacharjee B, di Muccio G, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

PDB-9nyd:
Cryo-EM structure of the glycosyltransferase GtrB in the pre-catalysis and product-bound state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

PDB-9nye:
Cryo-EM structure of the glycosyltransferase GtrB in the apo state (octamer volume)
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

PDB-9nyf:
Cryo-EM structure of the glycosyltransferase GtrB (tetramer volume)
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

PDB-9nyk:
Cryo-EM structure of the glycosyltransferase GtrB in the pre-intermediate state
Method: single particle / : Morgan RT, Motta S, Gil-Iturbe E, di Muccio G, Bhattacharjee B, Romagnoli A, Anwar MT, Mishra B, Ashraf K, Bang I, di Marino D, Lowary TL, Quick M, Petrou VI, Stowell MHB, Nygaard R, Mancia F

EMDB-49896:
Single-particle cryo-EM structure of the first variant of mobilized colistin resistance (MCR-1) in its ligand-bound state
Method: single particle / : Zinkle AP, Bunuro-Batista M, Herrera CM, Erramilli SK, Kloss B, Ashraf KU, Nosol K, Zhang G, Cater RJ, Marty MT, Kossiakoff AA, Trent MS, Nygaard R, Stansfeld PJ, Mancia F

PDB-9nww:
Single-particle cryo-EM structure of the first variant of mobilized colistin resistance (MCR-1) in its ligand-bound state
Method: single particle / : Zinkle AP, Bunuro-Batista M, Herrera CM, Erramilli SK, Kloss B, Ashraf KU, Nosol K, Zhang G, Cater RJ, Marty MT, Kossiakoff AA, Trent MS, Nygaard R, Stansfeld PJ, Mancia F

EMDB-53923:
Structure of the Human Peptide-Loading Complex Arrested by HCMV US6
Method: single particle / : Stolz M, Susac L, Trowitzsch S, Tampe R

PDB-9rcv:
Structure of the Human Peptide-Loading Complex Arrested by HCMV US6
Method: single particle / : Stolz M, Susac L, Trowitzsch S, Tampe R

EMDB-46976:
Arabinosyltransferase AftB in complex with Fab_B3
Method: single particle / : Liu Y, Mancia F

EMDB-46978:
donor substrate analog-bound AftB
Method: single particle / : Liu Y, Mancia F

EMDB-46998:
Product-Bound mannosyltransferase PimE
Method: single particle / : Liu Y

EMDB-46999:
mannosyltransferase PimE in complex with Fab_E6
Method: single particle / : Liu Y

PDB-9dlf:
Arabinosyltransferase AftB in complex with Fab_B3
Method: single particle / : Liu Y, Mancia F

PDB-9dlh:
donor substrate analog-bound AftB
Method: single particle / : Yaqi L

PDB-9dm5:
Product-Bound mannosyltransferase PimE
Method: single particle / : Liu Y

PDB-9dm7:
mannosyltransferase PimE in complex with Fab_E6
Method: single particle / : Liu Y

PDB-9mjb:
Product-Bound mannosyltransferase PimE in complex with Fab
Method: single particle / : Liu Y, Mancia F

EMDB-42067:
Non-uniform refinement map used for local refinement of transmembrane region
Method: single particle / : Nygaard R, Mancia F

EMDB-42068:
Non-uniform map used for local refinement of periplasmic domain
Method: single particle / : Nygaard R, Mancia F

EMDB-18658:
Structure of the NCOA4 (Nuclear Receptor Coactivator 4)-FTH1 (H-Ferritin) complex
Method: single particle / : Hoelzgen F, Klukin E, Zalk R, Shahar A, Cohen-Schwartz S, Frank GA

PDB-8qu9:
Structure of the NCOA4 (Nuclear Receptor Coactivator 4)-FTH1 (H-Ferritin) complex
Method: single particle / : Hoelzgen F, Klukin E, Zalk R, Shahar A, Cohen-Schwartz S, Frank GA

EMDB-43683:
Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-43684:
Cryo-EM structure of FLVCR2 in the outward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

PDB-8vzn:
Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

PDB-8vzo:
Cryo-EM structure of FLVCR2 in the outward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-41299:
Structural basis of peptidoglycan synthesis by E. coli RodA-PBP2 complex
Method: single particle / : Nygaard R, Mancia F

EMDB-41303:
Transmembrane map
Method: single particle / : Nygaard R, Mancia F

EMDB-41304:
Periplasmic map
Method: single particle / : Nygaard R, Mancia F

PDB-8tj3:
Structural basis of peptidoglycan synthesis by E. coli RodA-PBP2 complex
Method: single particle / : Nygaard R, Mancia F

EMDB-17756:
Structure of the murine trace amine-associated receptor TAAR7f bound to N,N-dimethylcyclohexylamine (DMCH) in complex with mini-Gs trimeric G protein
Method: single particle / : Gusach A, Lee Y, Edwards PC, Huang F, Weyand SN, Tate CG

PDB-8pm2:
Structure of the murine trace amine-associated receptor TAAR7f bound to N,N-dimethylcyclohexylamine (DMCH) in complex with mini-Gs trimeric G protein
Method: single particle / : Gusach A, Lee Y, Edwards PC, Huang F, Weyand SN, Tate CG

EMDB-26054:
Single-Particle Cryo-EM Structure of the WaaL O-antigen ligase in its ligand bound state
Method: single particle / : Ashraf KU, Nygaard R

EMDB-26057:
Single-Particle Cryo-EM Structure of the WaaL O-antigen ligase in its apo state
Method: single particle / : Ashraf KU, Nygaard R

PDB-7tpg:
Single-Particle Cryo-EM Structure of the WaaL O-antigen ligase in its ligand bound state
Method: single particle / : Ashraf KU, Nygaard R, Vickery ON, Erramilli SK, Herrera CM, McConville TH, Petrou VI, Giacometti SI, Dufrisne MB, Nosol K, Zinkle AP, Graham CLB, Loukeris M, Kloss B, Skorupinska-Tudek K, Swiezewska E, Roper D, Clarke OB, Uhlemann AC, Kossiakoff AA, Trent MS, Stansfeld PJ, Mancia F

PDB-7tpj:
Single-Particle Cryo-EM Structure of the WaaL O-antigen ligase in its apo state
Method: single particle / : Ashraf KU, Nygaard R, Vickery ON, Erramilli SK, Herrera CM, McConville TH, Petrou VI, Giacometti SI, Dufrisne MB, Nosol K, Zinkle AP, Graham CLB, Loukeris M, Kloss B, Skorupinska-Tudek K, Swiezewska E, Roper D, Clarke OB, Uhlemann AC, Kossiakoff AA, Trent MS, Stansfeld PJ, Mancia F

EMDB-12512:
cAMP-free rabbit HCN4 stabilized in LMNG-CHS detergent mixture
Method: single particle / : Giese H, Saponaro A

EMDB-12513:
cAMP-bound rabbit HCN4 stabilized in LMNG-CHS detergent mixture
Method: single particle / : Giese H, Saponaro A

PDB-7np3:
cAMP-free rabbit HCN4 stabilized in LMNG-CHS detergent mixture
Method: single particle / : Giese HM, Chaves-Sanjuan A, Saponaro A, Clarke O, Bolognesi M, Mancia F, Hendrickson WA, Thiel G, Santoro B, Moroni A

PDB-7np4:
cAMP-bound rabbit HCN4 stabilized in LMNG-CHS detergent mixture
Method: single particle / : Giese H, Chaves-Sanjuan A, Saponaro A, Clarke O, Bolognesi M, Mancia F, Hendrickson WA, Thiel G, Santoro B, Moroni A

EMDB-12466:
Rabbit HCN4 stabilised in amphipol A8-35
Method: single particle / : Swuec P

PDB-7nmn:
Rabbit HCN4 stabilised in amphipol A8-35
Method: single particle / : Chaves-Sanjuan A

EMDB-23883:
Single-Particle Cryo-EM Structure of Major Facilitator Superfamily Domain containing 2A in complex with LPC-18:3
Method: single particle / : Cater RJ, Chua GL

PDB-7mjs:
Single-Particle Cryo-EM Structure of Major Facilitator Superfamily Domain containing 2A in complex with LPC-18:3
Method: single particle / : Cater RJ, Chua GL, Erramilli SK, Keener JE, Choy BC, Tokarz P, Chin CF, Quek DQY, Kloss B, Pepe JG, Parisi G, Wong BH, Clarke OB, Marty MT, Kossiakoff AA, Khelashvili G, Silver DL, Mancia F

EMDB-22806:
Human WLS in complex with WNT8A
Method: single particle / : Nygaard R, Jia Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more