[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,813 items for (author: ma & dy)

PDB-9pis:
Ab initio structure of crambin by MicroED at 0.85A
Method: electron crystallography / : Vasireddy PCR, Low-Beer T, Spoth KA, Acehan D, Crawley MR, Martynowycz MW

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9ya9:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-72655:
Gb1g2 crosslinked to PLCb3
Method: single particle / : Fisher IJ, Lyon AM

EMDB-72732:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

EMDB-72733:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

PDB-9y7h:
Gb1g2 crosslinked to PLCb3
Method: single particle / : Fisher IJ, Lyon AM

PDB-9yao:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

PDB-9yap:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

EMDB-47792:
Structure of full length AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 in complex with anti-miR 17 oligonucleotide RGLS4326
Method: single particle / : Yen LY, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

EMDB-47793:
Structure of AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 (LBD-TMD) in complex with anti-miR 17 oligonucleotide RGLS4326
Method: single particle / : Yen LY, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

PDB-9e9d:
Structure of full length AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 in complex with anti-miR 17 oligonucleotide RGLS4326
Method: single particle / : Yen LY, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

PDB-9e9e:
Structure of AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 (LBD-TMD) in complex with anti-miR 17 oligonucleotide RGLS4326
Method: single particle / : Yen LY, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

EMDB-70622:
Hepatitis C virus sE1E2.Cut1+2.SPYdeltaN bound to antibodies AR4A and AR3C
Method: single particle / : Janus BM, Gonzalez FG, Ofek G

EMDB-70623:
Hepatitis C virus sE1E2.Cut1+2.SPYdeltaN bound to antibodies AR4A and HEPC74
Method: single particle / : Janus BM, Gonzalez FG, Ofek G

EMDB-74763:
HIV-1 CH505.N197D Env Ectodomain (Mature VLPs)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74779:
HIV-1 CH505.N197D Env Ectodomain (Immature VLPs)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74786:
HIV-1 Env BG505.SOSIP
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74789:
HIV-1 ADA.CM Env
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74792:
HIV-1 BG505.755* Env
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74797:
HIV-1 ADA.CM.755* (Immature VLPs, Triton X-100 extracted)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74813:
HIV-1 ADA.CM.755* Env (Immature VLPs)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74814:
HIV-1 ADA.CM.755* Env (Immature VLPs, tilted class)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-47765:
Week 26 C3V5, gp41-GH and gp41-base epitope polyclonal antibodies from participant 202 in complex with ConM SOSIP
Method: single particle / : Lin RN, Torres JL, Tran AS, Ozorowski G, Ward AB

EMDB-47570:
DH726-1 Fab bound to hemagglutinin from influenza A/Solomon Islands/3/2006
Method: single particle / : Finney J, Harrison SC, Walsh Jr RM, Kelsoe G

PDB-9qej:
Cryo-EM structure of the Importin beta:Importin7:Histone H1.0 complex
Method: single particle / : Neumann P

PDB-9qf0:
Cryo-EM structure of the mportin7:Histone H1.0 complex
Method: single particle / : Neumann P, Dickmanns A

EMDB-52860:
Ku70/80 bound to 147 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52861:
Ku70/80 bound to 153 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52879:
Ku70/80 with Ku70 linker and SAP domain bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52912:
Ku70/80 bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52958:
DNA-PK bound to a 153 bp H2AX nucleosome model 1
Method: single particle / : Hall C, Chaplin AK

EMDB-53025:
DNA-PK bound to 153 bp H2AX nucleosome model 2
Method: single particle / : Hall C, Chaplin A

EMDB-53026:
Ku80 mediated DNA-PK dimer bound to 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-53237:
DNA-PK bound to 153 bp H2AX nucleosome with ATPyS
Method: single particle / : Hall C, Chaplin AK

EMDB-55527:
Early Expressome Composite Map of TEC and 30S IC
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55528:
Early Expressome Consensus Refinement
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55529:
Early Expressome RNAP/TEC body
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55530:
E. coli 30S IC containing mRNA, IF1 and IF3
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55531:
E. coli 30S IC containing mRNA, initiator tRNA, IF1 and IF2
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-52550:
Ku70/80, DNA bound to Polymerase Mu
Method: single particle / : Chaplin AK, Amin H

EMDB-55898:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with bound plastocyanin
Method: single particle / : Pietras R, Sarewicz M, Szwalec M, Indyka P, Rawski M, Pintscher S, Mielecki B, Jaciuk M, Koziej L, Glatt S, Osyczka A

PDB-9tgg:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with bound plastocyanin
Method: single particle / : Pietras R, Sarewicz M, Szwalec M, Indyka P, Rawski M, Pintscher S, Mielecki B, Jaciuk M, Koziej L, Glatt S, Osyczka A

EMDB-53655:
Human Adenovirus D 10 Fiber Shaft by Focussed Refinement
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, T Young M, Parker AL, Bhella D

EMDB-53736:
Human Adenovirus D 10 Capsid Structure
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, Young MT, Parker AL, Bhella D

EMDB-74032:
5-methyl-cytidine twist corrected RNA origami 6-helix bundle type-2 dimer
Method: single particle / : McRae EKS, Yadav DK

EMDB-74033:
1-methyl-pseudouridine twist corrected RNA origami 6-helix bundle type-1 dimer
Method: single particle / : McRae EKS, Kumar YD

EMDB-73997:
1-methyl-pseudouridine L-21 ScaI Tetrahymena Ribozyme
Method: single particle / : McRae EKS, Yang H

EMDB-73998:
1-methyl-pseudouridine L-21 ScaI Tetrahymena Ribozyme - extended conformation
Method: single particle / : McRae EKS, Yang H

EMDB-70458:
Cryo-EM structure of human full-length XPO1 (unliganded)
Method: single particle / : Wing CE, Fung HYJ, Chook YM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more