[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 109 items for (author: lin & wc)

EMDB-46820:
Cryo-EM structure of a SUR1/Kir6.2 ATP-sensitive potassium channel in the presence of Aekatperone in the closed conformation
Method: single particle / : Driggers CM, ElSheikh A, Shyng SL

PDB-9dfx:
Cryo-EM structure of a SUR1/Kir6.2 ATP-sensitive potassium channel in the presence of Aekatperone in the closed conformation
Method: single particle / : Driggers CM, ElSheikh A, Shyng SL

EMDB-45808:
G115 gamma delta TCR/CD3 complex bound by OKT3 Fab
Method: single particle / : Hoque M, Saotome K, Franklin MC

EMDB-45810:
G115 gamma delta TCR/CD3 complex bound by OKT3 Fab
Method: single particle / : Hoque M, Saotome K, Franklin MC

EMDB-45811:
G115 gamma delta TCR/CD3 complex bound by OKT3 Fab
Method: single particle / : Hoque M, Saotome K, Franklin MC

EMDB-45814:
Dimeric 9C2 gamma delta TCR bound by Fab 3
Method: single particle / : Hoque M, Saotome K, Franklin MC

EMDB-42902:
Cryo-EM structure of human type I OSM receptor complex: model for full extracellular assembly
Method: single particle / : Zhou Y, Franklin MC

EMDB-42903:
Cryo-EM structure of human type I OSM receptor complex: model for assembly core region
Method: single particle / : Zhou Y, Franklin MC

EMDB-42904:
Cryo-EM structure of mouse type II OSM receptor complex: model for full extracellular assembly
Method: single particle / : Zhou Y, Franklin MC

EMDB-42905:
Cryo-EM structure of mouse type II OSM receptor complex: model for assembly core region
Method: single particle / : Zhou Y, Franklin MC

EMDB-41433:
Escherichia coli RNA polymerase unwinding intermediate (I1a) at the lambda PR promoter
Method: single particle / : Darst SA, Saecker RM, Mueller AU

EMDB-41437:
Escherichia coli RNA polymerase unwinding intermediate (I1d) at the lambda PR promoter
Method: single particle / : Darst SA, Saecker RM, Mueller AU

EMDB-41439:
Escherichia coli RNA polymerase unwinding intermediate (I1b) at the lambda PR promoter
Method: single particle / : Darst SA, Saecker RM, Mueller AU

EMDB-41448:
Escherichia coli RNA polymerase unwinding intermediate (I1c) at the lambda PR promoter
Method: single particle / : Darst SA, Saecker RM, Mueller AU

EMDB-41456:
Escherichia coli RNA polymerase closed complex intermediate at the lambda PR promoter
Method: single particle / : Darst SA, Saecker RM, Mueller AU

EMDB-41888:
Structure of Apo CXCR4/Gi complex
Method: single particle / : Saotome K, McGoldrick LL, Franklin MC

EMDB-41889:
Structure of CXCL12-bound CXCR4/Gi complex
Method: single particle / : Saotome K, McGoldrick LL, Franklin MC

EMDB-41890:
Structure of AMD3100-bound CXCR4/Gi complex
Method: single particle / : Saotome K, McGoldrick LL, Franklin MC

EMDB-41891:
Structure of REGN7663 Fab-bound CXCR4/Gi complex
Method: single particle / : Saotome K, McGoldrick LL, Franklin MC

EMDB-41892:
Structure of REGN7663-Fab bound CXCR4
Method: single particle / : Saotome K, McGoldrick LL, Franklin MC

EMDB-41893:
Structure of trimeric CXCR4 in complex with REGN7663 Fab
Method: single particle / : Saotome K, McGoldrick LL, Franklin MC

EMDB-41894:
Structure of tetrameric CXCR4 in complex with REGN7663 Fab
Method: single particle / : Saotome K, McGoldrick LL, Franklin MC

EMDB-36144:
Senktide bound to active human neurokinin 3 receptor in complex with Gq
Method: single particle / : Sun WJ, Yang F, Zhang HH, Yuan QN, Yin WC, Shi P, Eric X, Tian CL

EMDB-36145:
Neurokinin B bound to active human neurokinin 3 receptor in complex with Gq
Method: single particle / : Sun WJ, Yang F, Zhang HH, Yuan QN, Yin WC, Shi P, Eric X, Tian CL

EMDB-36146:
Substance P bound to active human neurokinin 3 receptor in complex with Gq
Method: single particle / : Sun WJ, Yang F, Zhang HH, Yuan QN, Yin WC, Shi P, Eric X, Tian CL

EMDB-29220:
CryoEM structure of HLA-A2 MAGEA4 (230-239) in complex with REGN6972 Fab and 2M2 Fab
Method: single particle / : Saotome K, Franklin MC

EMDB-29221:
CryoEM structure of HLA-A2 MAGEA4 (286-294) in complex with H2aM31345N Fab and 2M2 Fab
Method: single particle / : Saotome K, Franklin MC

PDB-8fja:
CryoEM structure of HLA-A2 MAGEA4 (230-239) in complex with REGN6972 Fab
Method: single particle / : Saotome K, Franklin MC

PDB-8fjb:
CryoEM structure of HLA-A2 MAGEA4 (286-294) in complex with H2aM31345N Fab
Method: single particle / : Saotome K, Franklin MC

EMDB-42141:
Complete DNA termination subcomplex 1 of Xenopus laevis DNA polymerase alpha-primase
Method: single particle / : Mullins EA, Chazin WC, Eichman BF

EMDB-42142:
Complete DNA termination subcomplex 2 of Xenopus laevis DNA polymerase alpha-primase
Method: single particle / : Mullins EA, Chazin WC, Eichman BF

EMDB-37096:
Rpd3S histone deacetylase complex
Method: single particle / : Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Zhang Y, Wong KH, Zhang X, Chao WCH, Jun H

EMDB-37122:
Rpd3S in complex with 187bp nucleosome
Method: single particle / : Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

EMDB-37123:
Rpd3S in complex with nucleosome with H3K36MLA modification, H3K9Q mutation and 187bp DNA
Method: single particle / : Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

EMDB-37124:
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1
Method: single particle / : Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

EMDB-37125:
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class2
Method: single particle / : Dong S, Li H, Meilin W, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

EMDB-37126:
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class3
Method: single particle / : Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

EMDB-37127:
Rpd3S in complex with nucleosome with H3K36MLA modification and 167bp DNA
Method: single particle / : Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Zhang Y, Wong KH, Chang X, Chao WCH, He J

EMDB-41156:
HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41157:
Global reconstruction for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41158:
CS2it1p2_F7K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41160:
CS4tt1p1_E3K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41161:
gH base local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41179:
HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41180:
Global reconstruction for HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Method: single particle / : Goldsmith JG, McLellan JS

PDB-8tco:
HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

PDB-8tea:
HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-33650:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33651:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33497:
Neurokinin A bound to active human neurokinin 2 receptor in complex with G324
Method: single particle / : Sun WJ, Yuan QN, Zhang HH, Yang F, Ling SL, Lv P, Eric X, Tian CL, Yin WC, Shi P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more