[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 95 items for (author: li & xp)

EMDB-65483:
In situ Tspan-7 spiral structure in retraction fiber
Method: helical / : Jia X, Wang DJ, Li XP, Liu N, Yu L, Wang HW

EMDB-70780:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71775:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

EMDB-39009:
positive allosteric modulator(BMS986187)-bound delta-opioid receptor-Gi complex
Method: single particle / : Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE

EMDB-62849:
Gi-bound kappa opioid receptor in complex with dynorphin and positive allosteric modulator MPAM-15
Method: single particle / : Zhuang Y, Wang Y, Xu Y, Luo P, Xu HE

EMDB-62531:
Cryo-EM structure of human ABCC4 (Apo state)
Method: single particle / : Li MH, Wen XP

EMDB-62532:
Cryo-EM structure of human ABCC4 (cAMP-bound)
Method: single particle / : Li MH, Wen XP

EMDB-62533:
Cryo-EM structure of human ABCC4 (MTX-bound)
Method: single particle / : Li MH, Wen XP

EMDB-62534:
Cryo-EM structure of human ABCC4 (PGE2-bound)
Method: single particle / : Li MH, Wen XP

EMDB-71718:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-71783:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

EMDB-39010:
positive allosteric modulator(BMS986122)-bound mu-opioid receptor-Gi complex
Method: single particle / : Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE

EMDB-39011:
positive allosteric modulator(MPAM-15)-bound mu-opioid receptor-Gi complex
Method: single particle / : Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE

EMDB-71719:
Structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-45581:
CryoEM structure of delta opioid receptor bound to G proteins and a partial agonist
Method: single particle / : Fay JF, Che T

EMDB-45582:
CryoEM structure of delta opioid receptor bound to G proteins and a full bitopic agonist
Method: single particle / : Fay JF, Che T

EMDB-44199:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

EMDB-44247:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

EMDB-44548:
Human proton sensing receptor GPR65 in complex with miniGs - focused map of 7TM
Method: single particle / : Howard MK, Hoppe N, Huang XP, Macdonald CB, Mehrotra E, Rockefeller Grimes P, Zahm AM, Trinidad DD, English J, Coyote-Maestas W, Manglik A

EMDB-44549:
Human proton sensing receptor GPR65 in complex with miniGs
Method: single particle / : Howard MK, Hoppe N, Huang XP, Macdonald CB, Mehrotra E, Rockefeller Grimes P, Zahm AM, Trinidad DD, English J, Coyote-Maestas W, Manglik A

EMDB-44550:
Human proton sensing receptor GPR68 in complex with miniGs
Method: single particle / : Howard MK, Hoppe N, Huang XP, Macdonald CB, Mehrotra E, Rockefeller Grimes P, Zahm AM, Trinidad DD, English J, Coyote-Maestas W, Manglik A

EMDB-44560:
Human proton sensing receptor GPR68 in complex with miniGsq
Method: single particle / : Howard MK, Hoppe N, Huang XP, Macdonald CB, Mehrotra E, Rockefeller Grimes P, Zahm AM, Trinidad DD, English J, Coyote-Maestas W, Manglik A

EMDB-44561:
Human proton sensing receptor GPR68 in complex with miniGsq - focused map of 7TM
Method: single particle / : Howard MK, Hoppe N, Huang XP, Macdonald CB, Mehrotra E, Rockefeller Grimes P, Zahm AM, Trinidad DD, English J, Coyote-Maestas W, Manglik A

EMDB-44596:
Human proton sensing receptor GPR4 in complex with miniGs - focused map of 7TM
Method: single particle / : Howard MK, Hoppe N, Huang XP, Macdonald CB, Mehrotra E, Rockefeller Grimes P, Zahm AM, Trinidad DD, English J, Coyote-Maestas W, Manglik A

EMDB-44597:
Human proton sensing receptor GPR4 in complex with miniGs
Method: single particle / : Howard MK, Hoppe N, Huang XP, Macdonald CB, Mehrotra E, Rockefeller Grimes P, Zahm AM, Trinidad DD, English J, Coyote-Maestas W, Manglik A

EMDB-47016:
Cryo-EM structure of IMPDH2 bound to IMP and GAD
Method: single particle / : Chen YJ, Li B, Parada LF

EMDB-41766:
CryoEM structure of D2 dopamine receptor in complex with GoA KE mutant, scFv16, and dopamine
Method: single particle / : Krumm BE, Kapolka NJ, Fay JF, Roth BL

EMDB-41776:
CryoEM structure of D2 dopamine receptor in complex with GoA KE mutant and dopamine
Method: single particle / : Krumm BE, Kapolka NJ, Fay JF, Roth BL

EMDB-38873:
cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.
Method: single particle / : Li Y, Lu G, Li J, Pei X, Lin J

EMDB-38874:
Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.
Method: single particle / : Li Y, Lu G, Li J, Pei X, Lin J

EMDB-38875:
Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
Method: single particle / : Li Y, Lu G, Li J, Pei X, Lin J

EMDB-38876:
cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
Method: single particle / : Li Y, Lu G, Li J, Pei X, Lin J

EMDB-41569:
Cryo-EM structure of HmAb64 scFv in complex with CNE40 SOSIP trimer
Method: single particle / : Chan KW, Kong XP

EMDB-35683:
Dopamine Receptor D1R-Gs-Rotigotine complex
Method: single particle / : Xu P, Huang S, Zhuang Y, Mao C, Zhang Y, Wang Y, Li H, Jiang Y, Xu HE

EMDB-35686:
Dopamine Receptor D4R-Gi-Rotigotine complex
Method: single particle / : Xu P, Huang S, Zhuang Y, Mao C, Zhang Y, Wang Y, Li H, Jiang Y, Xu HE

EMDB-35684:
Dopamine Receptor D2R-Gi-Rotigotine complex
Method: single particle / : Xu P, Huang S, Zhuang Y, Mao C, Zhang Y, Wang Y, Li H, Jiang Y, Xu HE

EMDB-35685:
Dopamine Receptor D3R-Gi-Rotigotine complex
Method: single particle / : Xu P, Huang S, Zhuang Y, Mao C, Zhang Y, Wang Y, Li H, Jiang Y, Xu HE

EMDB-35687:
Dopamine Receptor D5R-Gs-Rotigotine complex
Method: single particle / : Xu P, Huang S, Zhuang Y, Mao C, Zhang Y, Wang Y, Li H, Jiang Y, Xu HE

EMDB-31479:
Cryo-EM structure of human angiotensin receptor AT1R in complex Gq proteins and Sar1-AngII
Method: single particle / : Zhang D, Xu L

EMDB-27935:
Mycobacterium tuberculosis RNAP paused elongation complex with NusG transcription factor
Method: single particle / : Delbeau M, Darst SA, Campbell EA

EMDB-27938:
Mycobacterium tuberculosis RNAP paused elongation complex with Escherichia coli NusG transcription factor
Method: single particle / : Delbeau M, Darst SA, Campbell EA

EMDB-27942:
Mycobacterium tuberculosis RNAP elongation complex with NusG transcription factor
Method: single particle / : Delbeau M, Darst SA, Campbell EA

EMDB-27944:
Mycobacterium tuberculosis RNAP paused elongation complex
Method: single particle / : Delbeau M, Darst SA, Campbell EA

EMDB-27956:
Mycobacterium tuberculosis RNAP elongation complex
Method: single particle / : Delbeau M, Darst SA, Campbell EA

PDB-8e74:
Mycobacterium tuberculosis RNAP paused elongation complex with NusG transcription factor
Method: single particle / : Delbeau M, Darst SA, Campbell EA

PDB-8e79:
Mycobacterium tuberculosis RNAP paused elongation complex with Escherichia coli NusG transcription factor
Method: single particle / : Delbeau M, Darst SA, Campbell EA

PDB-8e82:
Mycobacterium tuberculosis RNAP elongation complex with NusG transcription factor
Method: single particle / : Delbeau M, Darst SA, Campbell EA

PDB-8e8m:
Mycobacterium tuberculosis RNAP paused elongation complex
Method: single particle / : Delbeau M, Darst SA, Campbell EA

PDB-8e95:
Mycobacterium tuberculosis RNAP elongation complex
Method: single particle / : Delbeau M, Darst SA, Campbell EA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more