[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 259 items for (author: ko & kt)

EMDB-49373:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

EMDB-49405:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1
Method: single particle / : Borst AJ, Weidle C

PDB-9nfu:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

PDB-9nh7:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1.
Method: single particle / : Borst AJ, Weidle C

EMDB-51365:
Cryo-EM structure of human SLC45A4 in lipid nanodiscs
Method: single particle / : Markusson S, Newstead S

EMDB-51377:
Cryo-EM structure of human SLC45A4 in detergent
Method: single particle / : Markusson S, Deme JC, Lea SM, Newstead S

PDB-9ghz:
Cryo-EM structure of human SLC45A4 in lipid nanodiscs
Method: single particle / : Markusson S, Newstead S

PDB-9giu:
Cryo-EM structure of human SLC45A4 in detergent
Method: single particle / : Markusson S, Deme JC, Lea SM, Newstead S

EMDB-50583:
360 A Loki CHMP4-7 rods
Method: helical / : Melnikov N, Junglas B, Halbi G, Nachmias D, Upcher A, Zalk R, Sachse C, Bernheim-Groswasser A, Elia N

PDB-9fn1:
360 A Loki CHMP4-7 rods
Method: helical / : Melnikov N, Junglas B, Halbi G, Nachmias D, Upcher A, Zalk R, Sachse C, Bernheim-Groswasser A, Elia N

EMDB-61196:
Cryo-EM structure of CRL2-FEM1B (dimer 1)
Method: single particle / : Zhao S, Xu C

EMDB-61197:
Cryo-EM structure of CRL2-FEM1B (dimer 2)
Method: single particle / : Zhao S, Xu C

EMDB-61198:
Cryo-EM structure of CRL2-FEM1B bound with TOM20(tetramer)
Method: single particle / : Zhao S, Xu C

EMDB-61199:
local refinement of FEM1B bound with TOM20 (dimer)
Method: single particle / : Zhao S, Xu C

EMDB-61200:
local refinement of FEM1B bound with TOM20(tetramer)
Method: single particle / : Zhao S, Xu C

EMDB-61362:
local refinement of FEM1B bound with TOM20
Method: single particle / : Zhao S, Xu C

EMDB-63187:
local refinement of FEM1B bound with PLD6
Method: single particle / : Zhao S, Xu C

EMDB-63188:
Dimer of CRL2-FEM1B bound with PLD6
Method: single particle / : Zhao S, Xu C

PDB-9j77:
Cryo-EM structure of CRL2-FEM1B (dimer 1)
Method: single particle / : Zhao S, Xu C

PDB-9j78:
Cryo-EM structure of CRL2-FEM1B (dimer 2)
Method: single particle / : Zhao S, Xu C

PDB-9j79:
Cryo-EM structure of CRL2-FEM1B bound with TOM20(tetramer)
Method: single particle / : Zhao S, Xu C

PDB-9j7a:
local refinement of FEM1B bound with TOM20 (dimer)
Method: single particle / : Zhao S, Xu C

PDB-9j7b:
local refinement of FEM1B bound with TOM20(tetramer)
Method: single particle / : Zhao S, Xu C

PDB-9jce:
local refinement of FEM1B bound with TOM20
Method: single particle / : Zhao S, Xu C

PDB-9lkx:
local refinement of FEM1B bound with PLD6
Method: single particle / : Zhao S, Xu C

PDB-9lky:
Dimer of CRL2-FEM1B bound with PLD6
Method: single particle / : Zhao S, Xu C

EMDB-50585:
Icosahedral Encapsulin with a closed pore state
Method: single particle / : Capper MJ, Kohhnke J

PDB-9fn9:
Icosahedral Encapsulin with a closed pore state
Method: single particle / : Capper MJ, Kohhnke J

EMDB-45194:
Cryo-EM structure of the Strand displacement Complex (IV) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Method: single particle / : Nayak AR, Sokolova VO, Sillamaa S, Sedmen J, Temiakov D, Zamudio-Ochoa A

EMDB-45195:
Cryo-EM structure of the Strand displacement Complex (I) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Method: single particle / : Nayak AR, Sokolova VO, Sillamaa S, Sedmen J, Temiakov D, Zamudio-Ochoa A

EMDB-45196:
Cryo-EM structure of the Strand displacement Complex (III) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Method: single particle / : Nayak AR, Sokolova VO, Sillamaa S, Sedmen J, Temiakov D, Zamudio-Ochoa A

EMDB-46497:
Cryo-EM structure of the Strand displacement Complex (III) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Method: single particle / : Nayak AR, Sokolova VO, Sillamaa S, Sedmen J, Temiakov D, Zamudio-Ochoa A

PDB-9c51:
Cryo-EM structure of the Strand displacement Complex (IV) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Method: single particle / : Nayak AR, Sokolova VO, Sillamaa S, Sedmen J, Temiakov D

PDB-9c52:
Cryo-EM structure of the Strand displacement Complex (I) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Method: single particle / : Nayak AR, Sokolova VO, Sillamaa S, Sedmen J, Temiakov D

PDB-9c53:
Cryo-EM structure of the Strand displacement Complex (II) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Method: single particle / : Nayak AR, Sokolova VO, Sillamaa S, Sedmen J, Temiakov D

PDB-9d2i:
Cryo-EM structure of the Strand displacement Complex (III) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Method: single particle / : Nayak AR, Sokolova VO, Sillamaa S, Sedmen J, Temiakov D

EMDB-50586:
CryoEM structure of Encapsulin::tdNfsB with an open pore state
Method: single particle / : Capper MJ, Kohhnke J

PDB-9fna:
CryoEM structure of Encapsulin::tdNfsB with an open pore state
Method: single particle / : Capper MJ, Kohhnke J

EMDB-52074:
Structure of the Xenorceptide A2-bound E. coli BAM complex (BamABCDE)
Method: single particle / : Jakob RP, Modaresi SM, Maier T, Hiller S

EMDB-18667:
Structure of human SPNS2 in LMNG
Method: single particle / : Li HZ, Pike ACW, McKinley G, Mukhopadhyay SMM, Moreau C, Scacioc A, Abrusci P, Borkowska O, Chalk R, Stefanic S, Burgess-Brown N, Duerr KL, Sauer DB

EMDB-18668:
Structure of human SPNS2 in DDM
Method: single particle / : Li HZ, Pike ACW, McKinley G, Mukhopadhyay SMM, Moreau C, Scacioc A, Abrusci P, Borkowska O, Chalk R, Stefanic S, Burgess-Brown N, Duerr KL, Sauer DB

PDB-8qv5:
Structure of human SPNS2 in LMNG
Method: single particle / : Li HZ, Pike ACW, McKinley G, Mukhopadhyay SMM, Moreau C, Scacioc A, Abrusci P, Borkowska O, Chalk R, Stefanic S, Burgess-Brown N, Duerr KL, Sauer DB

PDB-8qv6:
Structure of human SPNS2 in DDM
Method: single particle / : Li HZ, Pike ACW, McKinley G, Mukhopadhyay SMM, Moreau C, Scacioc A, Abrusci P, Borkowska O, Chalk R, Stefanic S, Burgess-Brown N, Duerr KL, Sauer DB

EMDB-38770:
Cryo-EM map of p97 cross-linked with ZFAND1 with three of the six NTDs resolved in the NTD-up conformation.
Method: single particle / : Draczkowski P, Hsu STD, Ko KT

EMDB-38771:
Cryo-EM map of p97 cross-linked with ZFAND1 with one of the six NTDs resolved in the NTD-down conformation.
Method: single particle / : Draczkowski P, Hsu STD, Ko KT

EMDB-38772:
Cryo-EM map of p97 cross-linked with ZFAND1 reconstructed with C6 symmetry.
Method: single particle / : Draczkowski P, Hsu STD, Ko KT

EMDB-19692:
Hexameric worm glutamate dehydrogenase (N-term. deletion 1-33)
Method: single particle / : Bohnacker S, Bohn S, Sattler M, Esser-von Bieren J

EMDB-19693:
Hexameric worm glutamate dehydrogenase (C136S)
Method: single particle / : Bohnacker S, Bohn S, Sattler M, Esser-von Bieren J

EMDB-19766:
Cryo-EM structure of SKP1-FBXO22 in complex with a BACH1 BTB dimer at 3.2A resolution
Method: single particle / : Khoshouei M, Goretzki B

EMDB-19768:
Cryo-EM structure of SKP1-FBXO22
Method: single particle / : Khoshouei M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more