[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 964 items for (author: johnson & i)

EMDB-74043:
Cryo-EM structure of the engineered vector AAV2.ATX002
Method: single particle / : Betegon M, Byrne LC, Conway JF

EMDB-53563:
Non-uniform refine map MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53564:
Focussed map (top) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53565:
Focussed map (bottom) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53566:
Focussed map (middle) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-55517:
Structure of human HER2 in complex with EPS232 Fab
Method: single particle / : Birtley J, Johnson RM, Regan L, Soni K, Pye VE, Fitzgerald K

EMDB-55518:
Structure of human HER2 in complex with EPS226 Fab
Method: single particle / : Birtley J, Regan L, Johnson RM, Soni K, Pye VE, Fitzgerald K

PDB-9t3r:
Structure of human HER2 in complex with EPS232 Fab
Method: single particle / : Birtley J, Johnson RM, Regan L, Soni K, Pye VE, Fitzgerald K

PDB-9t3s:
Structure of human HER2 in complex with EPS226 Fab
Method: single particle / : Birtley J, Regan L, Johnson RM, Soni K, Pye VE, Fitzgerald K

EMDB-49972:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in cleavage state
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70206:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

EMDB-70232:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70239:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in partially unfolded transducer state
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70259:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

PDB-9o0g:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in cleavage state
Method: single particle / : Richman DE, Berger JM

PDB-9o7o:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

PDB-9o8p:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex
Method: single particle / : Richman DE, Berger JM

PDB-9o8z:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in partially unfolded transducer state
Method: single particle / : Richman DE, Berger JM

PDB-9o9m:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

EMDB-53567:
An auto inhibitory loop in the MiDAC histone deacetylase complex
Method: single particle / : Fairall L, Schwabe JWR

PDB-9r4i:
An auto inhibitory loop in the MiDAC histone deacetylase complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9ya9:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

PDB-9qtj:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

EMDB-74907:
Soluble ectodomain of Herpes simplex virus 2 (HSV-2) glycoprotein B (gB) in the prefusion conformation in complex with 2c and D48 Fabs
Method: single particle / : Sponholtz MR, Johnson NV, McLellan JS

EMDB-48407:
E. coli GroEL bound with ATP and PBZ1587 inhibitor
Method: single particle / : Johnson SM, Chen Q

EMDB-48408:
E. coli SR1 single-ring GroEL oligomer
Method: single particle / : Johnson SM, Chen Q

EMDB-48409:
E. coli SR1 single-ring GroEL templated into pseudo-double-ring complex with PBZ1587 inhibitor
Method: single particle / : Johnson SM, Chen Q

EMDB-48410:
E. coli SR1 single-ring GroEL oligomer
Method: single particle / : Johnson SM, Chen Q

EMDB-48411:
E. coli GroES-GroEL-GroES football complex
Method: single particle / : Johnson SM, Chen Q

PDB-9p6r:
Structure of lysozyme-N,N',N"-triacetylchitotriose complex determined using REyes for automated MicroED
Method: electron crystallography / : Eremin D, Vlahakis NW, Rodriguez JA, Nelson HM

EMDB-49119:
PROTAC-induced IRE1 ternary complex
Method: single particle / : Du J, Johnson M, Azumaya C, Rohou A, Hsu PL, Ashkenazi A

PDB-9n88:
PROTAC-induced IRE1 ternary complex
Method: single particle / : Du J, Johnson M, Azumaya C, Rohou A, Hsu PL, Ashkenazi A

EMDB-48331:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

PDB-9mkn:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

EMDB-72086:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9q03:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-71531:
Angiopoietin-2 in complex with engineered conformationally rigid Fab 5A12.6DS, used for comparison with Fab 5A12.WT
Method: single particle / : Kung J, Johnson MC, Tegunov D, Jao CC, Wu P, Oh A, Lin M, Daria JM, Koth CM, Arthur CP, Rohou A, Sudhamsu J

EMDB-71532:
Angiopoietin-2 in complex with Fab 5A12.WT, used for comparison with Fab 5A12.6DS
Method: single particle / : Kung J, Johnson MC, Tegunov D, Jao CC, Wu P, Oh A, Lin M, Daria JM, Koth CM, Arthur CP, Rohou A, Sudhamsu J

EMDB-72160:
Cryo-EM structure of ternary complex Ikaros-ZF2:CC-885:CRBN:DDB1 (molecular glue degrader)
Method: single particle / : Zhu J, Pagarigan BE, Tran ET

PDB-9q2d:
Cryo-EM structure of ternary complex Ikaros-ZF2:CC-885:CRBN:DDB1 (molecular glue degrader)
Method: single particle / : Zhu J, Pagarigan BE, Tran ET

EMDB-51437:
TRPC5 in complex with spin-labelled ligand SpinPico3
Method: single particle / : Porav SA, Bon RS, Hammond KLR

EMDB-51416:
TRPC5 in complex with spin-labelled ligand SpinPico1
Method: single particle / : Porav SA, Bon RS

EMDB-51074:
TRPC5 in complex with photoswitch E-AzHC
Method: single particle / : Porav SA, Bon R, Muench S

EMDB-51076:
TRPC5 in complex with photoswitch Z-AzHC
Method: single particle / : Porav SA, Bon R, Muench S

EMDB-46597:
Human Sec61 complex inhibited by KZR-261
Method: single particle / : Park E, Wang L

PDB-9d6l:
Human Sec61 complex inhibited by KZR-261
Method: single particle / : Park E, Wang L

EMDB-52520:
Pre-clinical characterization of novel multi-client inhibitors of Sec61 with broad anti-tumor activity
Method: single particle / : Shahid R, Paavilainen VO

PDB-9hz5:
Pre-clinical characterization of novel multi-client inhibitors of Sec61 with broad anti-tumor activity
Method: single particle / : Shahid R, Paavilainen VO

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more