[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,002 items for (author: ho & kh)

EMDB-45235:
Subtomogram average (C1) of fatty acid synthase from S.cerevisiae prepared using cryo-plasmaFIB milling
Method: subtomogram averaging / : Feathers JR, Zhong ED, Khavnekar S

EMDB-42400:
RORC mRNA 3'UTR riboswitch A97G/G98A mutant class C
Method: single particle / : Asarnow D, Khoroshkin M, Goodarzi H, Cheng Y

EMDB-42401:
RORC mRNA 3'UTR riboswitch 77-GA mutant class A
Method: single particle / : Asarnow D, Khoroshkin M, Goodarzi H, Cheng Y

EMDB-42403:
RORC mRNA 3'UTR riboswitch 117-AC mutant class C
Method: single particle / : Asarnow D, Khoroshkin M, Goodarzi H, Cheng Y

EMDB-42404:
RORC mRNA 3'UTR riboswitch 117-AC mutant class B
Method: single particle / : Asarnow D, Khoroshkin M, Goodarzi H, Cheng Y

EMDB-36488:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Composite map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

EMDB-37212:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Receptor original map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

EMDB-37214:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Ligand/CCL7 focused map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

PDB-8jps:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Composite map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

EMDB-41355:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its translocation ACP partner of Module 2
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tko:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its translocation ACP partner of Module 2
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-43762:
Aca2 from Pectobacterium phage ZF40 bound to RNA
Method: single particle / : Wilkinson ME, Birkholz N, Kimanius D, Fineran PC

PDB-8w35:
Aca2 from Pectobacterium phage ZF40 bound to RNA
Method: single particle / : Wilkinson ME, Birkholz N, Kimanius D, Fineran PC

EMDB-41305:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41306:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked Intra-State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41307:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its elongation ACP partner
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tjn:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tjo:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked Intra-State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tjp:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its elongation ACP partner
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-50860:
Cryo EM map of the type 2A polymorph of alpha-synuclein at pH 7.0.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-50888:
Cryo EM structure of the type 3B polymorph of alpha-synuclein at low pH.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-42527:
Pre-fusion Measles virus fusion protein complexed with Fab 77
Method: single particle / : Zyla D, Saphire EO

EMDB-42539:
Structure of the Measles virus Fusion protein in the post-fusion conformation
Method: single particle / : Zyla D, Saphire EO

EMDB-42593:
Structure of the Measles virus Fusion protein in the pre-fusion conformation
Method: single particle / : Zyla D, Saphire EO

EMDB-42595:
Structure of the Measles virus Fusion protein in the pre-fusion conformation with bound [FIP-HRC]2-PEG11
Method: single particle / : Zyla D, Saphire EO

EMDB-43827:
Fab 77-stabilized MeV F ectodomain fragment
Method: single particle / : Zyla D, Saphire EO

PDB-8ut2:
Pre-fusion Measles virus fusion protein complexed with Fab 77
Method: single particle / : Zyla D, Saphire EO

PDB-8utf:
Structure of the Measles virus Fusion protein in the post-fusion conformation
Method: single particle / : Zyla D, Saphire EO

PDB-8uup:
Structure of the Measles virus Fusion protein in the pre-fusion conformation
Method: single particle / : Zyla D, Saphire EO

PDB-8uuq:
Structure of the Measles virus Fusion protein in the pre-fusion conformation with bound [FIP-HRC]2-PEG11
Method: single particle / : Zyla D, Saphire EO

PDB-9at8:
Fab 77-stabilized MeV F ectodomain fragment
Method: single particle / : Zyla D, Saphire EO

EMDB-18540:
human connexin-36 gap junction channel in complex with mefloquine
Method: single particle / : Ding XY, Blum TB, Korkhov VM

EMDB-18987:
human connexin-36 gap junction channel
Method: single particle / : Ding XY, Blum TB, Korkhov VM

EMDB-18988:
human connexin-36 gap junction channel in complex with quinine
Method: single particle / : Ding XY, Blum TB, Korkhov VM

PDB-8qoj:
human connexin-36 gap junction channel in complex with mefloquine
Method: single particle / : Ding XY, Blum TB, Korkhov VM

PDB-8r7p:
human connexin-36 gap junction channel
Method: single particle / : Ding XY, Blum TB, Korkhov VM

PDB-8r7q:
human connexin-36 gap junction channel in complex with quinine
Method: single particle / : Ding XY, Blum TB, Korkhov VM

EMDB-36730:
SARS-CoV-2 Spike RBD (dimer) in complex with two 2S-1244 nanobodies
Method: single particle / : Yang Y, Zhang CH

EMDB-36735:
Dimer of SARS-CoV-2 BA.2 spike and IBT-CoV144(C3 symmetry)
Method: single particle / : Yang Y, Zhang CH

EMDB-36740:
Dimer of SARS-CoV-2 BA.2 spike and IBT-CoV144(C1 symmetry)
Method: single particle / : Yang Y, Zhang CH

PDB-8jys:
SARS-CoV-2 Spike RBD (dimer) in complex with two 2S-1244 nanobodies
Method: single particle / : Yang Y, Zhang CH

EMDB-42074:
Representative tomogram of Enterococcus faecium WT Com15
Method: electron tomography / : Hang HC, Park D

EMDB-42086:
Representative tomogram of Enterococcus faecium SagA complementation strain
Method: electron tomography / : Hang HC, Park D

EMDB-42087:
Representative tomogram of Enterococcus faecium SagA deletion strain
Method: electron tomography / : Hang HC, Park D

EMDB-17197:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-19108:
Human TPC2 in Complex withAntagonist (R)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

PDB-8ouo:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-19066:
TREK2 in OGNG/CHS detergent micelle with biparatopic inhibitory nanobody Nb6158
Method: single particle / : Smith KHM, Tucker SJ

EMDB-42676:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

EMDB-42999:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more