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Showing 1 - 50 of 171 items for (author: haruhiko & e)

EMDB-63507:
Cryo-EM structure of the chromatin remodeler Rad26 N-terminal deletion mutant bound to the nucleosome at SHL6
Method: single particle / : Fukushima Y, Takizawa Y, Kinoshita C, Ogasawara M, Haruhiko E, Sekine S, Kagawa W, Kurumizaka H

EMDB-63262:
Cryo-EM structure of the chromatin remodeler Rad26 bound to the nucleosome at SHL6
Method: single particle / : Fukushima Y, Takizawa Y, Kinoshita C, Ogasawara M, Kagawa W, Kurumizaka H

PDB-9lox:
Cryo-EM structure of the chromatin remodeler Rad26 bound to the nucleosome at SHL6
Method: single particle / : Fukushima Y, Takizawa Y, Kinoshita C, Ogasawara M, Kagawa W, Kurumizaka H

EMDB-64603:
RNA polymerase II elongation complex stalled at SHL(-0.5) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-64642:
RNA polymerase II elongation complex stalled at SHL(-6) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9uxw:
RNA polymerase II elongation complex stalled at SHL(-0.5) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9uz9:
RNA polymerase II elongation complex stalled at SHL(-6) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-64225:
RNA polymerase II elongation complex stalled at SHL(-4) of the H3-H4 octasome
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-64226:
RNA polymerase II elongation complex stalled at SHL(-0.5) of the H3-H4 octasome (tetrasome)
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9ujs:
RNA polymerase II elongation complex stalled at SHL(-4) of the H3-H4 octasome
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9ujt:
RNA polymerase II elongation complex stalled at SHL(-0.5) of the H3-H4 octasome (tetrasome)
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-68371:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, Spt6 reconstruction)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-68372:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, Spt6-Set2(AID) reconstruction)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-68373:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, Nucleosome-Set2(CD) reconstruction)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66103:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66104:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66105:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66106:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66107:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, FACT-hexamer)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wms:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmt:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmu:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmv:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmw:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, FACT-hexamer)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-63444:
Zebrafish ovum lysosomal peptide:N-glycanase
Method: single particle / : Honda A, Kamada K, Burton-Smith RN, Murata K, Suzuki T

PDB-9lwg:
Zebrafish ovum lysosomal peptide:N-glycanase
Method: single particle / : Honda A, Kamada K, Burton-Smith RN, Murata K, Suzuki T

EMDB-62028:
Cryo-EM structure of TMPRSS2 in complex with Fab fragments of 752 mAb and 2228 mAb
Method: single particle / : Katsura K, Hisano T, Matsumoto T, Shirouzu M

PDB-9k3t:
Cryo-EM structure of TMPRSS2 in complex with Fab fragments of 752 mAb and 2228 mAb
Method: single particle / : Katsura K, Hisano T, Matsumoto T, Shirouzu M

EMDB-65631:
Subtomogram average of MJ1HA S-layer
Method: subtomogram averaging / : Goto-Ito S, Yamagata A, Lee Y, Ehara H, Ito T

EMDB-65632:
Subtomogram average of MJ1 attachment organelle
Method: subtomogram averaging / : Goto-Ito S, Yamagata A, Lee Y, Ehara H, Ito T

EMDB-63050:
Cryo-EM structure of linker-extended biparatopic antibody BA1-GP4 in complex with TNFR2
Method: single particle / : Otsuki T, Matsumoto S, Fujita J, Miyata T, Namba K, Kanada R, Okuno Y, Kamada H, Ohno H, Akiba H

PDB-9lfl:
Cryo-EM structure of linker-extended biparatopic antibody BA1-GP4 in complex with TNFR2
Method: single particle / : Otsuki T, Matsumoto S, Fujita J, Miyata T, Namba K, Kanada R, Okuno Y, Kamada H, Ohno H, Akiba H

EMDB-60592:
RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Hirano R, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

EMDB-60593:
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Rina H, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

PDB-9ii7:
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Rina H, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

EMDB-61058:
Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-61059:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-61060:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0n:
Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0o:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0p:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-38877:
Cryo-EM structure of the overlapping di-nucleosome (closed form)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

EMDB-38878:
Cryo-EM structure of the overlapping di-nucleosome (intermediate form2)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

EMDB-38879:
Cryo-EM structure of the overlapping di-nucleosome (open form)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

EMDB-38880:
Cryo-EM structure of the overlapping di-nucleosome (intermediate form1)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

PDB-8y3c:
Cryo-EM structure of the overlapping di-nucleosome (closed form)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

PDB-8y3d:
Cryo-EM structure of the overlapping di-nucleosome (intermediate form2)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

PDB-8y3e:
Cryo-EM structure of the overlapping di-nucleosome (open form)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

PDB-8y3f:
Cryo-EM structure of the overlapping di-nucleosome (intermediate form1)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

EMDB-39211:
Cryo EM structure of Komagataella phaffii Rat1-Rai1-Rtt103 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

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External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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