[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 31 items for (author: gebhard & j)

EMDB-54548:
Outer genome layer of Chaetoceros lorenzianus DNA virus (ClorDNAV), a CRESS-DNA bacilladnavirus
Method: single particle / : Munke A, Gebhard J

EMDB-54550:
Capsid structure of Chaetoceros lorenzianus DNA virus (ClorDNAV), a CRESS-DNA bacilladnavirus
Method: single particle / : Munke A, Gebhard J

PDB-9s3s:
Capsid structure of Chaetoceros lorenzianus DNA virus (ClorDNAV), a CRESS-DNA bacilladnavirus
Method: single particle / : Munke A, Gebhard J

EMDB-17343:
Cryo-EM structure of Rhodopsin-Gi bound to antibody fragment Fab13
Method: single particle / : Pamula F, Tejero O, Muehle J, Thoma R, Schertler GFX, Marino J, Tsai CJ

EMDB-17344:
Cryo-EM structure of Rhodopsin-Gi bound with antibody fragments scFv16 and Fab79, conformation 1
Method: single particle / : Pamula F, Tejero O, Muehle J, Thoma R, Schertler GFX, Marino J, Tsai CJ

EMDB-17345:
Cryo-EM structure of Rhodopsin-Gi bound with antibody fragments scFv16 and Fab79, conformation 2
Method: single particle / : Pamula F, Tejero O, Muehle J, Thoma R, Schertler GFX, Marino J, Tsai CJ

PDB-8p12:
Cryo-EM structure of Rhodopsin-Gi bound to antibody fragment Fab13
Method: single particle / : Pamula F, Tejero O, Muehle J, Thoma R, Schertler GFX, Marino J, Tsai CJ

PDB-8p13:
Cryo-EM structure of Rhodopsin-Gi bound with antibody fragments scFv16 and Fab79, conformation 1
Method: single particle / : Pamula F, Tejero O, Muehle J, Thoma R, Schertler GFX, Marino J, Tsai CJ

PDB-8p15:
Cryo-EM structure of Rhodopsin-Gi bound with antibody fragments scFv16 and Fab79, conformation 2
Method: single particle / : Pamula F, Tejero O, Muehle J, Thoma R, Schertler GFX, Marino J, Tsai CJ

EMDB-19884:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Gi heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epr:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Gi heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-19882:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-19883:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epp:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epq:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-16311:
Structure of the rod CNG channel bound to calmodulin
Method: single particle / : Marino J

EMDB-16313:
The structure of the rod CNG channel bound to calmodulin
Method: single particle / : Marino J

PDB-8bx7:
Structure of the rod CNG channel bound to calmodulin
Method: single particle / : Marino J

EMDB-12718:
The structure of the native CNGA1/CNGB1 CNG channel from retinal rods
Method: single particle / : Barret DCA, Marino J

PDB-7o4h:
The structure of the native CNGA1/CNGB1 CNG channel from retinal rods
Method: single particle / : Barret DCA, Marino J

EMDB-12746:
Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist
Method: single particle / : Isaikina P, Tsai CJ

PDB-7o7f:
Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist
Method: single particle / : Isaikina P, Tsai CJ, Dietz NB, Pamula F, Goldie KN, Schertler GFX, Maier T, Stahlberg H, Deupi X, Grzesiek S

EMDB-4598:
Rhodopsin-Gi protein complex
Method: single particle / : Tsai CJ, Marino J

PDB-6qno:
Rhodopsin-Gi protein complex
Method: single particle / : Tsai CJ, Marino J, Adaixo RJ, Pamula F, Muehle J, Maeda S, Flock T, Taylor NMI, Mohammed I, Matile H, Dawson RJP, Deupi X, Stahlberg H, Schertler GFX

EMDB-7868:
Mu Opioid Receptor-Gi Protein Complex
Method: single particle / : Koehl A, Hu H

EMDB-7869:
Mu Opioid Receptor-Gi Protein Complex
Method: single particle / : Koehl A, Hu H

PDB-6dde:
Mu Opioid Receptor-Gi Protein Complex
Method: single particle / : Koehl A, Hu H, Maeda S, Manglik A, Zhang Y, Kobilka BK, Skiniotis G, Weis WI

PDB-6ddf:
Mu Opioid Receptor-Gi Protein Complex
Method: single particle / : Koehl A, Hu H, Maeda S, Manglik A, Kobilka BK, Skiniotis G, Weis WI

EMDB-2347:
cryo-EM structure of the NavCt voltage-gated sodium channel
Method: electron crystallography / : Tsai CJ, Tani K, Irie K, Hiroaki Y, Shimomura T, McMillan DG, Cook GM, Schertler G, Fujiyoshi Y, Li XD

PDB-4bgn:
cryo-EM structure of the NavCt voltage-gated sodium channel
Method: electron crystallography / : Tsai CJ, Tani K, Irie K, Hiroaki Y, Shimomura T, Mcmillan DG, Cook GM, Schertler G, Fujiyoshi Y, Li XD

EMDB-1079:
Electron crystallography reveals the structure of metarhodopsin I.
Method: electron crystallography / : Ruprecht JJ, Mielke T, Vogel R, Villa C, Schertler GFX

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more