[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 357 items for (author: de & antoni & a)

EMDB-17725:
CryoEM reconstruction of Influenza A virus (HK68) hemagglutinin bound to an Affimer reagent
Method: single particle / : Debski-Antoniak O, Flynn A, Klebl PD, Tiede C, Muench S, Tomlinson D, Fontana J

EMDB-18592:
E.coli DNA gyrase in complex with 217 bp substrate DNA and LEI-800
Method: single particle / : Ghilarov D, Martin NI, van der Stelt M

PDB-8qqi:
E.coli DNA gyrase in complex with 217 bp substrate DNA and LEI-800
Method: single particle / : Ghilarov D, Martin NI, van der Stelt M

EMDB-19014:
PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Method: single particle / : Debski-Antoniak O, Drulyte I, Hurdiss DL

EMDB-19015:
Local refinement of the PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Method: single particle / : Debski-Antoniak O, Hurdiss DL

EMDB-19016:
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 42H3 antibody Fab fragments
Method: single particle / : Debski-Antoniak O, Hurdiss DL

EMDB-19017:
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 46E6 antibody Fab fragments
Method: single particle / : Debski-Antoniak O, Drulyte I, Hurdiss DL

PDB-8r9w:
PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Method: single particle / : Debski-Antoniak O, Hurdiss DL

PDB-8r9x:
Local refinement of the PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Method: single particle / : Debski-Antoniak O, Hurdiss DL

PDB-8r9y:
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 42H3 antibody Fab fragments
Method: single particle / : Debski-Antoniak O, Hurdiss DL

PDB-8r9z:
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 46E6 antibody Fab fragments
Method: single particle / : Debski-Antoniak O, Hurdiss DL

EMDB-40261:
DDB1/CRBN in complex with ARV-471 and the ER ligand-binding domain
Method: single particle / : Digianantonio K, Drulyte I, Gough S, Bekes M, Taylor I

EMDB-16466:
The structural architecture of alpha-synuclein oligomer
Method: single particle / : Cuellar J, Santos J, Pallares I, Ventura S, Valpuesta JM

EMDB-16528:
3D reconstruction of alpha-synuclein oligomer-PSMa3 complex
Method: single particle / : Cuellar J, Santos J, Pallares I, Ventura S, Valpuesta JM

EMDB-42884:
Microtubule-TTLL6 map
Method: single particle / : Mahalingan KK, Grotjahn D, Li Y, Lander GC, Zehr EA, Roll-Mecak A

PDB-8u3z:
Model of TTLL6 bound to microtubule from composite map
Method: single particle / : Mahalingan KK, Grotjahn D, Li Y, Lander GC, Zehr EA, Roll-Mecak A

EMDB-41022:
Map of Tubulin Tyrosine Ligase Like 6
Method: single particle / : Mahalingan KK, Grotjahn D, Li Y, Lander GC, Zehr EA, Roll-Mecak A

EMDB-41090:
Composite map of TTLL6 bound to unmodified human microtubule
Method: single particle / : Mahalingan KK, Grotjahn D, Li Y, Lander GC, Zehr EA, Roll-Mecak A

EMDB-41018:
Microtubule-TTLL6 map
Method: single particle / : Mahalingan KK, Grotjahn D, Li Y, Lander GC, Zehr EA, Roll-Mecak A

PDB-8t42:
Model of TTLL6 MTBH1-2 bound to microtubule
Method: single particle / : Mahalingan KK, Grotjahn D, Li Y, Lander GC, Zehr EA, Roll-Mecak A

EMDB-19177:
Structure of the 55LCC ATPase complex
Method: single particle / : Foglizzo M, Degtjarik O, Zeqiraj E

PDB-8rhn:
Structure of the 55LCC ATPase complex
Method: single particle / : Foglizzo M, Degtjarik O, Zeqiraj E

EMDB-43732:
momSalB bound Kappa Opioid Receptor in complex Gi1
Method: single particle / : Fay JF, Che T

EMDB-43733:
GR89,696 bound Kappa Opioid Receptor in complex with Gz
Method: single particle / : Fay JF, Che T

EMDB-43734:
GR89,696 bound Kappa Opioid Receptor in complex with gustducin
Method: single particle / : Fay JF, Che T

EMDB-28198:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with LLNL-199
Method: single particle / : Binshtein E, Crowe JE

EMDB-28199:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Method: single particle / : Binshtein E, Crowe JE

PDB-8ekd:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Method: single particle / : Binshtein E, Crowe JE

EMDB-18381:
UFL1 E3 ligase bound 60S ribosome
Method: single particle / : Makhlouf L, Zeqiraj E, Kulathu Y

EMDB-18382:
UFL1 E3 ligase bound 60S ribosome
Method: single particle / : Makhlouf L, Kulathu Y, Zeqiraj E

PDB-8qfc:
UFL1 E3 ligase bound 60S ribosome
Method: single particle / : Makhlouf L, Zeqiraj E, Kulathu Y

PDB-8qfd:
UFL1 E3 ligase bound 60S ribosome
Method: single particle / : Makhlouf L, Kulathu Y, Zeqiraj E

EMDB-40477:
KLHDC2 in complex with EloB and EloC
Method: single particle / : Digianantonio KM, Bekes M

PDB-8sh2:
KLHDC2 in complex with EloB and EloC
Method: single particle / : Digianantonio KM, Bekes M

EMDB-17724:
CryoEM reconstruction of hemagglutinin HK68 of Influenza A virus bound to an Affimer reagent
Method: single particle / : Debski-Antoniak O, Flynn A, Klebl DP, Tiede C, Muench S, Tomlinson D, Fontana J

PDB-8pk3:
CryoEM reconstruction of hemagglutinin HK68 of Influenza A virus bound to an Affimer reagent
Method: single particle / : Debski-Antoniak O, Flynn A, Klebl DP, Tiede C, Muench S, Tomlinson D, Fontana J

EMDB-16778:
Type six secretion system exported effector 5 (Tse5)
Method: single particle / : Gonzalez-Magana A, Tascon I, Ubarretxena-Belandia I, Albesa-Jove D

PDB-8cp6:
Type six secretion system exported effector 5 (Tse5)
Method: single particle / : Gonzalez-Magana A, Tascon I, Ubarretxena-Belandia I, Albesa-Jove D

EMDB-16458:
Electron cryo-tomography and subtomogram averaging of cytoplasmic lattice filaments from mammalian oocytes
Method: subtomogram averaging / : Petrovic A, Bauerlein FJB, Jentoft IMA, Schuh M, Fernandez-Busnadiego R

EMDB-16472:
In situ cryo-electron tomogram of cytoplasmic lattice filaments from a mouse oocyte
Method: electron tomography / : Bauerlein FJB, Jentoft IMA, Petrovic A, Fernandez-Busnadiego R, Schuh M

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41876:
momSalB bound Kappa Opioid Receptor in complex with GoA
Method: single particle / : Fay JF, Che T

EMDB-17576:
SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

EMDB-17578:
SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

PDB-8p99:
SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more