[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 53 items for (author: bernecky & c)

EMDB-18375:
RNA polymerase II bound to Alu RNA right arm
Method: single particle / : Tluckova K, Bernecky C

PDB-8qep:
RNA polymerase II bound to Alu RNA right arm
Method: single particle / : Tluckova K, Bernecky C

EMDB-18367:
RNA polymerase II bound to Alu RNA left arm
Method: single particle / : Tluckova K, Bernecky C

EMDB-18371:
RNA polymerase II bound to minimal Alu RNA right arm in the canonical conformation
Method: single particle / : Tluckova K, Bernecky C

EMDB-18376:
RNA polymerase II bound to minimal Alu RNA right arm in the alternative conformation
Method: single particle / : Tluckova K, Bernecky C

PDB-8qeq:
RNA polymerase II bound to minimal Alu RNA right arm in the alternative conformation
Method: single particle / : Tluckova K, Bernecky C

EMDB-50292:
Structure of Pol II-TC-NER-STK19 complex, consensus map
Method: single particle / : Lee SH, Sixma TK

EMDB-50293:
Structure of Pol II-TC-NER-STK19 complex, focused on CSA-DDB1-DDA1-UVSSA-STK19
Method: single particle / : Lee SH, Sixma TK

EMDB-50294:
Structure of Pol II-TC-NER-STK19 complex, focused on Pol II-ELOF1
Method: single particle / : Lee SH, Sixma TK

EMDB-50295:
Structure of Pol II-TC-NER-STK19 complex, focused on CRL4CSA
Method: single particle / : Lee SH, Sixma TK

EMDB-50306:
Structure of Pol II-TC-NER-STK19 complex, focused on CSA-DDB1-DDA1-CSB
Method: single particle / : Lee SH, Sixma TK

EMDB-50325:
Structure of Pol II-TC-NER-STK19 complex, composite map
Method: single particle / : Lee SH, Sixma TK

PDB-9fd2:
Structure of Pol II-TC-NER-STK19 complex
Method: single particle / : Lee SH, Sixma TK

EMDB-14855:
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate and TARBP2 subunit
Method: single particle / : Zanova M, Zapletal D, Kubicek K, Stefl R, Pinkas M, Novacek J

PDB-7zpj:
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate and TARBP2 subunit
Method: single particle / : Zanova M, Zapletal D, Kubicek K, Stefl R, Pinkas M, Novacek J

EMDB-14383:
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate
Method: single particle / : Zanova M, Zapletal D, Kubicek K, Stefl R, Pinkas M, Novacek J

EMDB-14384:
Mammalian Dicer in the dicing state with pre-miR-15a substrate
Method: single particle / : Zanova M, Zapletal D

EMDB-14387:
Mouse endoribonuclease Dicer (composite structure)
Method: single particle / : Zanova M, Zapletal D, Kubicek K, Stefl R, Pinkas M, Novacek J

EMDB-14854:
Mammalian Dicer in the "dicing state" with pre-miR-15a substrate
Method: single particle / : Zanova M, Zapletal D, Kubicek K, Stefl R, Pinkas M, Novacek J

EMDB-14856:
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate and TARBP2 subunit
Method: single particle / : Zanova M, Zapletal D, Kubicek K, Stefl R, Pinkas M, Novacek J

PDB-7yym:
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate
Method: single particle / : Zanova M, Zapletal D, Kubicek K, Stefl R, Pinkas M, Novacek J

PDB-7yyn:
Mammalian Dicer in the dicing state with pre-miR-15a substrate
Method: single particle / : Zanova M, Zapletal D, Kubicek K, Stefl R, Pinkas M, Novacek J

PDB-7yz4:
Mouse endoribonuclease Dicer (composite structure)
Method: single particle / : Zanova M, Zapletal D, Kubicek K, Stefl R, Pinkas M, Novacek J

PDB-7zpi:
Mammalian Dicer in the "dicing state" with pre-miR-15a substrate
Method: single particle / : Zanova M, Zapletal D, Kubicek K, Stefl R, Pinkas M, Novacek J

PDB-7zpk:
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate and TARBP2 subunit
Method: single particle / : Zanova M, Zapletal D, Kubicek K, Stefl R, Pinkas M, Novacek J

EMDB-15135:
Human RNA polymerase I
Method: single particle / : Daiss JL, Pilsl M, Straub K, Bleckmann A, Hoecherl M, Heiss FB, Abascal-Palacios G, Ramsay E, Tluckova K, Mars JC, Fuertges T, Bruckmann A, Rudack T, Bernecky C, Lamour V, Panov K, Vannini A, Moss T, Engel C

PDB-8a43:
Human RNA polymerase I
Method: single particle / : Daiss JL, Pilsl M, Straub K, Bleckmann A, Hoecherl M, Heiss FB, Abascal-Palacios G, Ramsay E, Tluckova K, Mars JC, Fuertges T, Bruckmann A, Rudack T, Bernecky C, Lamour V, Panov K, Vannini A, Moss T, Engel C

EMDB-3815:
Structure of an RNA polymerase II-DSIF transcription elongation complex
Method: single particle / : Bernecky C, Plitzko JM, Cramer P

EMDB-3816:
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC2
Method: single particle / : Bernecky C, Plitzko JM, Cramer P

EMDB-3817:
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC3
Method: single particle / : Bernecky C, Plitzko JM, Cramer P

EMDB-3818:
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC4
Method: single particle / : Bernecky C, Plitzko JM, Cramer P

EMDB-3819:
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC5
Method: single particle / : Bernecky C, Plitzko JM, Cramer P

PDB-5oik:
Structure of an RNA polymerase II-DSIF transcription elongation complex
Method: single particle / : Bernecky C, Plitzko JM, Cramer P

EMDB-3626:
RNA polymerase II-Paf1C-TFIIS
Method: single particle / : Xu Y, Cramer P

EMDB-3627:
RNA polymerase II-Paf1C-TFIIS-A
Method: single particle / : Xu Y, Cramer P

EMDB-3628:
RNA polymerase II-Paf1C-TFIIS-B
Method: single particle / : Xu Y, Cramer P

EMDB-3629:
RNA polymerase II-Paf1C-TFIIS-C
Method: single particle / : Xu Y, Cramer P

EMDB-3594:
RNA polymerase I initially transcribing complex with visible tandem Winged Helix domain
Method: single particle / : Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P

EMDB-3590:
Structure
Method: single particle / : Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P

EMDB-3591:
Structure of RNA Polymerase
Method: single particle / : Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P

EMDB-3592:
Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation I)
Method: single particle / : Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P

EMDB-3593:
RNA polymerase I initially transcribing complex
Method: single particle / : Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P

PDB-5n5y:
Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation III)
Method: single particle / : Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P

PDB-5n5z:
Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation II)
Method: single particle / : Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P

PDB-5n60:
Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation I)
Method: single particle / : Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P

PDB-5n61:
RNA polymerase I initially transcribing complex
Method: single particle / : Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P

EMDB-3219:
Structure of transcribing mammalian RNA polymerase II (EC2)
Method: single particle / : Bernecky C, Herzog F, Baumeister W, Plitzko JM, Cramer P

EMDB-3220:
Structure of transcribing mammalian RNA polymerase II (EC3)
Method: single particle / : Bernecky C, Herzog F, Baumeister W, Plitzko JM, Cramer P

EMDB-3218:
Structure of transcribing mammalian RNA polymerase II (EC1)
Method: single particle / : Bernecky C, Herzog F, Baumeister W, Plitzko JM, Cramer P

PDB-5flm:
Structure of transcribing mammalian RNA polymerase II
Method: single particle / : Bernecky C, Herzog F, Baumeister W, Plitzko JM, Cramer P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more