[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 73 items for (author: asturias & f)

EMDB-54904:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54905:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54925:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

EMDB-55037:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55097:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55099:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

EMDB-55105:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-55115:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9shm:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9shn:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9si8:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

PDB-9sml:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9spv:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9spw:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

PDB-9sq0:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9sqq:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-40971:
Atomic model of the mammalian mouse Mediator complex with CKM module
Method: single particle / : Zhao H, Asturias F

EMDB-41107:
CryoEM structure of TR-TRAP
Method: single particle / : Zhao H, Asturias F

PDB-8t1l:
Atomic model of the mammalian mouse Mediator complex with CKM module
Method: single particle / : Zhao H, Asturias F

PDB-8t9d:
CryoEM structure of TR-TRAP
Method: single particle / : Zhao H, Asturias F

EMDB-40968:
Atomic model of the mammalian Mediator complex with MED26 subunit
Method: single particle / : Zhao H, Asturias F

EMDB-40972:
CryoEM map of TR-TRAP
Method: single particle / : Zhao H, Asturias F

EMDB-40975:
CryoEM map of mouse mediator complex with alternate conformation CKM module
Method: single particle / : Zhao H, Asturias F

PDB-8t1i:
Atomic model of the mammalian Mediator complex with MED26 subunit
Method: single particle / : Zhao H, Asturias F

EMDB-27626:
Helical reconstruction of A92E HIV capsid in presence of FG mutant CPSF6 construct
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-27629:
Helical reconstruction of A92E HIV capsid in presence of FG mutant CPSF6 construct
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-27598:
Helical reconstruction of A92E HIV capsid in complex with CPSF6 construct
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-27599:
Helical reconstruction of A92E HIV capsid in complex with CPSF6 construct
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-27618:
Helical reconstruction of A92E HIV capsid in complex with CPSF6 construct
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-27620:
Helical reconstruction of A92E HIV capsid in complex with CPSF6 construct
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-25657:
Helical reconstruction of A92E HIV capsid in presence of FG mutant CPSF6 construct
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-25656:
Helical reconstruction of A92E HIV capsid in complex with CPSF6 construct
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-27617:
Helical reconstruction of A92E HIV capsid in complex with CPSF6 construct (filtered by local resolution)
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-27619:
Helical reconstruction of A92E HIV capsid in complex with CPSF6 construct (filtered by local resolution)
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-27625:
Helical reconstruction of A92E HIV capsid in presence of FG mutant CPSF6 construct (filtered by local resolution)
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-21514:
map of the mammalian Mediator complex
Method: single particle / : Zhao H, Young N, Asturias F

PDB-6w1s:
Atomic model of the mammalian Mediator complex
Method: single particle / : Zhao H, Young N, Asturias F

EMDB-21424:
Helical reconstruction of HIV capsid protein
Method: helical / : Zhao H, Iqbal N, Vanblerkom P, Asturias F, Kvaratskhelia M

EMDB-21423:
Hexamer of Helical HIV capsid by RASTR method
Method: helical / : Zhao H, Iqbal N

PDB-6vws:
Hexamer of Helical HIV capsid by RASTR method
Method: helical / : Zhao H, Iqbal N, Asturias F, Kvaratskhelia M, Vanblerkom P

EMDB-20391:
CryoEM structure of mouse mediator subunit one deletion
Method: single particle / : Asturias F, Zhao H, Young N

EMDB-20392:
CryoEM structure of wild type mouse mediator with MED19-FLAG
Method: single particle / : Asturias F, Zhao H

EMDB-20393:
CryoEM structure of wild type mediator with MED25-FLAG
Method: single particle / : Asturias F, Zhao H

EMDB-7998:
RNA Pol II(G) focus refinement
Method: single particle / : Yu X, Jishage M

EMDB-7997:
RNA Pol II(G)
Method: single particle / : Yu X, Jishage M

PDB-6drd:
RNA Pol II(G)
Method: single particle / : Yu X, Jishage M, Shi Y, Ganesan S, Sali A, Chait BT, Asturias F, Roeder RG

EMDB-7006:
Human ribonucleotide reductase large subunit (alpha) with dATP and CDP
Method: single particle / : Brignole EJ, Drennan CL

PDB-6aui:
Human ribonucleotide reductase large subunit (alpha) with dATP and CDP
Method: single particle / : Brignole EJ, Drennan CL, Asturias FJ, Tsai KL, Penczek PA

EMDB-8471:
Cryo-Electron microscopy structure of species-D human adenovirus 26
Method: single particle / : Reddy V, Yu X

EMDB-8479:
Cryo-EM map of the transcriptional Mediator
Method: single particle / : Tsai KL, Yu X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more