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7TI1
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BU of 7ti1 by Molmil
Structure of AmpC bound to RPX-7063 at 2.0A
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, CHLORIDE ION, ...
Authors:Clifton, M.C, Abendroth, J, Edwards, T.E, Hecker, S.J.
Deposit date:2022-01-12
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Broad-spectrum cyclic boronate beta-lactamase inhibitors featuring an intramolecular prodrug for oral bioavailability.
Bioorg.Med.Chem., 62, 2022
7TI0
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BU of 7ti0 by Molmil
Structure of CTX-M-15 bound to RPX-7063 at 1.5A
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, CHLORIDE ION, ...
Authors:Clifton, M.C, Abendroth, J, Hecker, S.J, Edwards, T.E.
Deposit date:2022-01-12
Release date:2022-05-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Broad-spectrum cyclic boronate beta-lactamase inhibitors featuring an intramolecular prodrug for oral bioavailability.
Bioorg.Med.Chem., 62, 2022
7TC1
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BU of 7tc1 by Molmil
Crystal structure of D179N KPC-2 beta-lactamase in complex with vaborbactam
Descriptor: Carbapenem-hydrolyzing beta-lactamase KPC, PHOSPHATE ION, Vaborbactam
Authors:van den Akker, F, Alsenani, T.
Deposit date:2021-12-22
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Structural Characterization of the D179N and D179Y Variants of KPC-2 beta-Lactamase: Omega-Loop Destabilization as a Mechanism of Resistance to Ceftazidime-Avibactam.
Antimicrob.Agents Chemother., 66, 2022
7TBX
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BU of 7tbx by Molmil
Crystal structure of D179Y KPC-2 beta-lactamase
Descriptor: Carbapenem-hydrolyzing beta-lactamase KPC
Authors:van den Akker, F, Alsenani, T.
Deposit date:2021-12-22
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Structural Characterization of the D179N and D179Y Variants of KPC-2 beta-Lactamase: Omega-Loop Destabilization as a Mechanism of Resistance to Ceftazidime-Avibactam.
Antimicrob.Agents Chemother., 66, 2022
7TB7
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BU of 7tb7 by Molmil
Crystal structure of D179N KPC-2 beta-lactamase
Descriptor: CITRIC ACID, Carbapenem-hydrolyzing beta-lactamase KPC
Authors:van den Akker, F, Alsenani, T.
Deposit date:2021-12-21
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Structural Characterization of the D179N and D179Y Variants of KPC-2 beta-Lactamase: Omega-Loop Destabilization as a Mechanism of Resistance to Ceftazidime-Avibactam.
Antimicrob.Agents Chemother., 66, 2022
7SPN
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BU of 7spn by Molmil
Crystal structure of IS11, a thermophilic esterase
Descriptor: IS11
Authors:Stogios, P.J, Evdokimova, E, Khusnutdinova, A, Yakunin, A.F, Savchenko, A.
Deposit date:2021-11-02
Release date:2022-08-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Crystal structure of IS11, a thermophilic esterase
To Be Published
7S5S
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BU of 7s5s by Molmil
CTX-M-15 WT in complex with BLIP WT
Descriptor: Beta-lactamase, Beta-lactamase inhibitory protein
Authors:Lu, S, Palzkill, T, Hu, L.Y, Prasad, B.V.V, Sankaran, B.
Deposit date:2021-09-11
Release date:2022-11-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:An active site loop toggles between conformations to control antibiotic hydrolysis and inhibition potency for CTX-M beta-lactamase drug-resistance enzymes.
Nat Commun, 13, 2022
7S0V
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BU of 7s0v by Molmil
The role of an Asp-Asp pair in the structure, function and inhibition of CTX-M Class A Beta-lactamase
Descriptor: 3-(1H-pyrazol-1-yl)-N-[3-(1H-tetrazol-5-yl)phenyl]-5-(trifluoromethyl)benzamide, Beta-lactamase
Authors:Kemp, M.T, Chen, Y.
Deposit date:2021-08-31
Release date:2021-11-10
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mutation of the conserved Asp-Asp pair impairs the structure, function, and inhibition of CTX-M Class A beta-lactamase.
Febs Lett., 595, 2021
7R3R
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BU of 7r3r by Molmil
Crystal structure of CTX-M-15 G238C mutant apoenzyme
Descriptor: Beta-lactamase, CHLORIDE ION, SULFATE ION
Authors:Tooke, C.L, Hinchliffe, P, Spencer, J.
Deposit date:2022-02-07
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Penicillanic Acid Sulfones Inactivate the Extended-Spectrum beta-Lactamase CTX-M-15 through Formation of a Serine-Lysine Cross-Link: an Alternative Mechanism of beta-Lactamase Inhibition.
Mbio, 13, 2022
7R3Q
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BU of 7r3q by Molmil
Crystal structure of CTX-M-15 G238C/A240 insert mutant apoenzyme
Descriptor: Beta-lactamase, CHLORIDE ION, SULFATE ION
Authors:Tooke, C.L, Hinchliffe, P, Spencer, J.
Deposit date:2022-02-07
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Penicillanic Acid Sulfones Inactivate the Extended-Spectrum beta-Lactamase CTX-M-15 through Formation of a Serine-Lysine Cross-Link: an Alternative Mechanism of beta-Lactamase Inhibition.
Mbio, 13, 2022
7QOR
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BU of 7qor by Molmil
Structure of beta-lactamase TEM-171
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Hakanpaa, J, Petrova, T, Samygina, V.R, Chojnowski, G, Lamzin, V, Egorov, A.M.
Deposit date:2021-12-28
Release date:2022-07-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Crystal structures of the molecular class A beta-lactamase TEM-171 and its complexes with tazobactam.
Acta Crystallogr D Struct Biol, 78, 2022
7QNK
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BU of 7qnk by Molmil
Structure of beta-lactamase TEM-171 complexed with tazobactam intermediate at 2.5 A resolution
Descriptor: ACETATE ION, Beta-lactamase TEM, TAZOBACTAM INTERMEDIATE
Authors:Hakanpaa, J, Petrova, T, Samygina, V.R, Lamzin, V.S, Egorov, A.M.
Deposit date:2021-12-21
Release date:2022-07-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the molecular class A beta-lactamase TEM-171 and its complexes with tazobactam.
Acta Crystallogr D Struct Biol, 78, 2022
7QLP
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BU of 7qlp by Molmil
Structure of beta-lactamase TEM-171 complexed with tazobactam intermediate at 2.3 A resolution
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Hakanpaa, J, Petrova, T, Samygina, V.R, Lamzin, V.S, Egorov, A.M.
Deposit date:2021-12-20
Release date:2022-07-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of the molecular class A beta-lactamase TEM-171 and its complexes with tazobactam.
Acta Crystallogr D Struct Biol, 78, 2022
7Q11
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BU of 7q11 by Molmil
Crystal structure of CTX-M-14 in complex with Ixazomib
Descriptor: Beta-lactamase, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Werner, N, Perbandt, M, Hinrichs, W, Prester, A, Rohde, H, Aepfelbacher, M, Betzel, C.
Deposit date:2021-10-17
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Structural basis to repurpose boron-based proteasome inhibitors Bortezomib and Ixazomib as beta-lactamase inhibitors.
Sci Rep, 12, 2022
7Q0Z
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BU of 7q0z by Molmil
Crystal structure of CTX-M-14
Descriptor: Beta-lactamase, GLYCEROL, SULFATE ION
Authors:Werner, N, Perbandt, M, Hinrichs, W, Prester, A, Rohde, H, Aepfelbacher, M, Betzel, C.
Deposit date:2021-10-17
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural basis to repurpose boron-based proteasome inhibitors Bortezomib and Ixazomib as beta-lactamase inhibitors.
Sci Rep, 12, 2022
7Q0Y
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BU of 7q0y by Molmil
Crystal structure of CTX-M-14 in complex with Bortezomib
Descriptor: ACETATE ION, Beta-lactamase, CHLORIDE ION, ...
Authors:Werner, N, Perbandt, M, Hinrichs, W, Prester, A, Rohde, H, Aepfelbacher, M, Betzel, C.
Deposit date:2021-10-17
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural basis to repurpose boron-based proteasome inhibitors Bortezomib and Ixazomib as beta-lactamase inhibitors.
Sci Rep, 12, 2022
7PU6
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BU of 7pu6 by Molmil
STRUCTURE OF ESTER-HYDROLASE EH7 FROM THE METAGENOME OF MARINE SEDIMENTS AT MILAZZO HARBOR (SICILY, ITALY) COMPLEXED WITH A DERIVATIVE OF OCTYL 4-NITROPHENYL HEXYLPHOSPHONATE
Descriptor: Esterase, GLYCEROL, hexyl(octoxy)phosphinic acid
Authors:Cea Rama, I, Sanz-Aparicio, J.
Deposit date:2021-09-28
Release date:2022-07-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Crystal structure of a family VIII beta-lactamase fold hydrolase reveals the molecular mechanism for its broad substrate scope.
Febs J., 289, 2022
7PP8
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BU of 7pp8 by Molmil
STRUCTURE OF ESTER-HYDROLASE EH7 FROM METAGENOME OF MARINE SEDIMENTS AT MILAZZO HARBOR (SICILY, ITALY) COMPLEXED WITH A DERIVATIVE OF METHYL 4-NITROPHENYL HEXYLPHOSPHONATE
Descriptor: DI(HYDROXYETHYL)ETHER, Esterase, GLYCEROL, ...
Authors:Cea-Rama, I, Sanz-Aparicio, J.
Deposit date:2021-09-13
Release date:2022-07-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure of a family VIII beta-lactamase fold hydrolase reveals the molecular mechanism for its broad substrate scope.
Febs J., 289, 2022
7PP3
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BU of 7pp3 by Molmil
STRUCTURE OF ESTER-HYDROLASE EH7 FROM THE METAGENOME OF MARINE SEDIMENTS AT MILAZZO HARBOR (SICILY, ITALY)
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Esterase, ...
Authors:Cea-Rama, I, Sanz-Aparicio, J.
Deposit date:2021-09-13
Release date:2022-07-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of a family VIII beta-lactamase fold hydrolase reveals the molecular mechanism for its broad substrate scope.
Febs J., 289, 2022
7PA5
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BU of 7pa5 by Molmil
Complex between the beta-lactamase CMY-2 with an inhibitory nanobody
Descriptor: Beta-lactamase, GLYCEROL, PHOSPHATE ION, ...
Authors:Frederic Cawez, F.C, Frederic Kerff, F.K, Moreno Galleni, M.G, Raphael Herman, R.H.
Deposit date:2021-07-29
Release date:2022-11-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.184 Å)
Cite:Development of Nanobodies as Theranostic Agents against CMY-2-Like Class C beta-Lactamases.
Antimicrob.Agents Chemother., 67, 2023
7MQN
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BU of 7mqn by Molmil
Crystal structure of class C beta lactamase from Rhodobacter sphaeroides
Descriptor: Beta-lactamase, PHOSPHATE ION
Authors:Chang, C, Tesar, C, Endres, M, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2021-05-05
Release date:2021-05-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal structure of class C beta lactamase from Rhodobacter sphaeroides
To Be Published
7MDF
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BU of 7mdf by Molmil
Full-length S95A ClbP bound to N-acyl-D-asparagine analog
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate, Beta-lactamase, CHLORIDE ION, ...
Authors:Velilla, J.A, Volpe, M.R, Gaudet, R.
Deposit date:2021-04-04
Release date:2022-09-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of colibactin activation by the ClbP peptidase.
Nat.Chem.Biol., 19, 2023
7MDE
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BU of 7mde by Molmil
Full-length S95A ClbP
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Beta-lactamase, CHLORIDE ION, ...
Authors:Velilla, J.A, Volpe, M.R, Gaudet, R.
Deposit date:2021-04-04
Release date:2022-09-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of colibactin activation by the ClbP peptidase.
Nat.Chem.Biol., 19, 2023
7MDC
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BU of 7mdc by Molmil
Full-length wildtype ClbP inhibited by hexanoyl-D-asparagine boronic acid
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate, Beta-lactamase, CHLORIDE ION, ...
Authors:Velilla, J.A, Volpe, M.R, Gaudet, R.
Deposit date:2021-04-03
Release date:2022-09-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A small molecule inhibitor prevents gut bacterial genotoxin production.
Nat.Chem.Biol., 19, 2023
7LR9
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BU of 7lr9 by Molmil
Crystal structure of KPC-2 S70G/T215P mutant with hydrolyzed imipenem
Descriptor: (2R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-(2-methanimidamidoethylsulfanyl)-2,3-dihydro-1H-pyrrole -5-carboxylic acid, Carbapenem-hydrolyzing beta-lactamase KPC
Authors:Furey, I, Palzkill, T, Hu, L, Prasad, B.V.V.
Deposit date:2021-02-16
Release date:2022-08-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystal structure of KPC-2 T215P mutant
To Be Published

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PDB entries from 2024-07-10

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