PDB: 73420 resultsInfo pagesStatus searchChemie searchBIRD

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3J1N	Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module Descriptor: DNA-directed RNA polymerase II subunit RPABC1, DNA-directed RNA polymerase II subunit RPABC2, DNA-directed RNA polymerase II subunit RPABC3, ... Authors: Asturias, F.J, Imasaki, T. Deposit date: 2012-03-29 Release date: 2013-03-06 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (16 Å) Cite: Interaction of the mediator head module with RNA polymerase II. Structure, 20, 2012
2EY4	Crystal Structure of a Cbf5-Nop10-Gar1 Complex Descriptor: Probable tRNA pseudouridine synthase B, Ribosome biogenesis protein Nop10, ZINC ION, ... Authors: Rashid, R, Liang, B, Li, H, Southeast Collaboratory for Structural Genomics (SECSG) Deposit date: 2005-11-09 Release date: 2006-01-24 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.11 Å) Cite: Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita. Mol.Cell, 21, 2006
7NRP	The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG Descriptor: CACODYLATE ION, DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'), RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') Authors: Thorpe, C, Hardwick, J, McDonough, M.A, Hall, J.P, Baker, Y.R, El-Sagheer, A.H, Brown, T. Deposit date: 2021-03-04 Release date: 2022-06-22 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.67 Å) Cite: An LNA-amide modification that enhances the cell uptake and activity of phosphorothioate exon-skipping oligonucleotides. Nat Commun, 13, 2022
7OOS	The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG Descriptor: DNA (5'-D(*CP*TP*(05K)P*TP*CP*TP*TP*TP*G)-3'), RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), STRONTIUM ION Authors: Thorpe, C, Hardwick, J, McDonough, M.A, Hall, J.P, Baker, Y.R, El-Sagheer, A.H, Brown, T. Deposit date: 2021-05-28 Release date: 2022-08-03 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.6 Å) Cite: An LNA-amide modification that enhances the cell uptake and activity of phosphorothioate exon-skipping oligonucleotides. Nat Commun, 13, 2022
7OZZ	The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG with LNA-amide modification Descriptor: DNA (5'-D(*CP*TP*(05H)P*TP*CP*TP*TP*TP*G)-3'), POTASSIUM ION, RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') Authors: Thorpe, C, Hardwick, J, McDonough, M.A, Hall, J.P, Baker, Y.R, El-Sagheer, A.H, Brown, T. Deposit date: 2021-06-29 Release date: 2022-08-03 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.7 Å) Cite: An LNA-amide modification that enhances the cell uptake and activity of phosphorothioate exon-skipping oligonucleotides. Nat Commun, 13, 2022
8DVR	Cryo-EM structure of RIG-I bound to the end of p3SLR30 (+AMPPNP) Descriptor: Antiviral innate immune response receptor RIG-I, GUANOSINE-5'-TRIPHOSPHATE, ZINC ION, ... Authors: Wang, W, Pyle, A.M. Deposit date: 2022-07-29 Release date: 2022-11-02 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands. Mol.Cell, 82, 2022
8DVS	Cryo-EM structure of RIG-I bound to the end of OHSLR30 (+ATP) Descriptor: ADENOSINE-5'-DIPHOSPHATE, Antiviral innate immune response receptor RIG-I, MAGNESIUM ION, ... Authors: Wang, W, Pyle, A.M. Deposit date: 2022-07-29 Release date: 2022-11-16 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3 Å) Cite: The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands. Mol.Cell, 82, 2022
3J9M	Structure of the human mitochondrial ribosome (class 1) Descriptor: 12S rRNA, 16S rRNA, E-site tRNA, ... Authors: Amunts, A, Brown, A, Toots, J, Scheres, S.H, Ramakrishnan, V. Deposit date: 2015-02-08 Release date: 2015-04-15 Last modified: 2018-07-18 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Ribosome. The structure of the human mitochondrial ribosome. Science, 348, 2015
7K00	Structure of the Bacterial Ribosome at 2 Angstrom Resolution Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Watson, Z.L, Ward, F.R, Meheust, R, Ad, O, Schepartz, A, Banfield, J.F, Cate, J.H.D. Deposit date: 2020-09-02 Release date: 2020-09-23 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (1.98 Å) Cite: Structure of the bacterial ribosome at 2 angstrom resolution. Elife, 9, 2020
8JIV	Atomic structure of wheat ribosome reveals unique features of the plant ribosomes Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Mishra, R.K, Sharma, P, Hussain, T. Deposit date: 2023-05-28 Release date: 2024-03-27 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.84 Å) Cite: Cryo-EM structure of wheat ribosome reveals unique features of the plant ribosomes. Structure, 32, 2024
7ELL	In situ structure of capping enzyme lambda2, penetration protein mu1 of mammalian reovirus capsid asymmetric unit. Descriptor: MYRISTIC ACID, Mu1, mRNA (guanine-N(7)-)-methyltransferase Authors: Zhou, Z.H, Pan, M. Deposit date: 2021-04-12 Release date: 2021-10-20 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Asymmetric reconstruction of mammalian reovirus reveals interactions among RNA, transcriptional factor mu2 and capsid proteins. Nat Commun, 12, 2021
3KTW	Crystal structure of the SRP19/S-domain SRP RNA complex of Sulfolobus solfataricus Descriptor: MAGNESIUM ION, POTASSIUM ION, SRP RNA, ... Authors: Wild, K, Bange, G, Bozkurt, G, Sinning, I. Deposit date: 2009-11-26 Release date: 2010-02-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural insights into the assembly of the human and archaeal signal recognition particles. Acta Crystallogr.,Sect.D, 66, 2010
1MZP	Structure of the L1 protuberance in the ribosome Descriptor: 50s ribosomal protein L1P, MAGNESIUM ION, fragment of 23S rRNA Authors: Nikulin, A, Eliseikina, I, Tishchenko, S, Nevskaya, N, Davydova, N, Platonova, O, Piendl, W, Selmer, M, Liljas, A, Zimmermann, R, Garber, M, Nikonov, S. Deposit date: 2002-10-09 Release date: 2003-01-21 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Structure of the L1 protuberance in the ribosome. Nat.Struct.Biol., 10, 2003
7PZR	Cryo-EM structure of POLRMT in free form. Descriptor: DNA-directed RNA polymerase, mitochondrial Authors: Das, H, Hallberg, B.M. Deposit date: 2021-10-13 Release date: 2022-11-16 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3 Å) Cite: Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization. Cell, 185, 2022
8E5P	Escherichia coli Rho-dependent transcription pre-termination complex containing 24 nt long RNA spacer, Mg-ADP-BeF3, and NusG; Rho hexamer part Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ... Authors: Molodtsov, V, Wang, C. Deposit date: 2022-08-22 Release date: 2022-09-07 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8E6W	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, lambda-tR1 rut RNA, Mg-ADP-BeF3, and NusG; Rho part Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2022-08-23 Release date: 2022-09-07 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4.27 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
7PKO	CryoEM structure of Rotavirus NSP2 Descriptor: Non-structural protein 2 Authors: Bravo, J.P.K, Borodavka, A. Deposit date: 2021-08-26 Release date: 2021-09-29 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural basis of rotavirus RNA chaperone displacement and RNA annealing. Proc.Natl.Acad.Sci.USA, 118, 2021
7PKP	NSP2 RNP complex Descriptor: Non-structural protein 2 Authors: Bravo, J.P.K, Borodavka, A. Deposit date: 2021-08-26 Release date: 2021-09-29 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis of rotavirus RNA chaperone displacement and RNA annealing. Proc.Natl.Acad.Sci.USA, 118, 2021
8E70	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, dC75 rut mimic RNA, Mg-ADP-BeF3, and NusG; Rho hexamer part Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2022-08-23 Release date: 2022-09-07 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
3V9W	Crystal structure of RNase T in complex with a preferred ssDNA (TTA) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*CP*TP*TP*A)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.702 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9S	Crystal structure of RNase T in complex with a product ssDNA (AAC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9Z	Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9U	Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.298 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3VA3	Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang) Descriptor: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.714 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
1K73	Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit Descriptor: 23S RRNA, 5S RRNA, ANISOMYCIN, ... Authors: Hansen, J, Ban, N, Nissen, P, Moore, P.B, Steitz, T.A. Deposit date: 2001-10-18 Release date: 2003-07-22 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (3.01 Å) Cite: Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit J.Mol.Biol., 330, 2003

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