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8FPS
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BU of 8fps by Molmil
GluA2 flip Q isoform N619K mutant of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg/N619K)
Descriptor: CHLORIDE ION, Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T.
Deposit date:2023-01-05
Release date:2024-02-28
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.38 Å)
Cite:The open gate of the AMPA receptor forms a Ca 2+ binding site critical in regulating ion transport.
Nat.Struct.Mol.Biol., 31, 2024
8FQ1
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BU of 8fq1 by Molmil
GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 150mM CaCl2, 330uM CTZ, and 100mM L-glutamate (Open-Ca150)
Descriptor: CALCIUM ION, Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T.
Deposit date:2023-01-05
Release date:2024-02-28
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (5.59 Å)
Cite:The open gate of the AMPA receptor forms a Ca 2+ binding site critical in regulating ion transport.
Nat.Struct.Mol.Biol., 31, 2024
8GMH
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BU of 8gmh by Molmil
Crystal Structure of the ternary complex of TelA-LXG, LapA3, and LapA4
Descriptor: 1,2-ETHANEDIOL, LXG domain-containing protein, LapA3, ...
Authors:Klein, T.A, Shah, P.Y, Gkragkopoulou, P, Grebenc, D.W, Kim, Y, Whitney, J.C.
Deposit date:2023-03-25
Release date:2024-01-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of a tripartite protein complex that targets toxins to the type VII secretion system.
Proc.Natl.Acad.Sci.USA, 121, 2024
8G10
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BU of 8g10 by Molmil
Structure of Ternary Complex of cGAS with dsDNA and Bound ITP and GTP
Descriptor: Cyclic GMP-AMP synthase, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Wu, S, Sohn, J.
Deposit date:2023-02-01
Release date:2024-05-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS.
Nat Commun, 15, 2024
8G1J
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BU of 8g1j by Molmil
Structure of Ternary Complex of cGAS with dsDNA and Bound ATP and ITP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Wu, S, Sohn, J.
Deposit date:2023-02-02
Release date:2024-05-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS.
Nat Commun, 15, 2024
6FID
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BU of 6fid by Molmil
Bovine trypsin solved by S-SAD on ID30B
Descriptor: BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:McCarthy, A.A, Mueller-Dieckmann, C.
Deposit date:2018-01-18
Release date:2018-02-07
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:ID30B - a versatile beamline for macromolecular crystallography experiments at the ESRF.
J Synchrotron Radiat, 25, 2018
6FJ0
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BU of 6fj0 by Molmil
Crystal structure of ERK2 in complex with an adenosine derivative
Descriptor: 5'-deoxy-5'-(prop-2-yn-1-ylamino)adenosine, DIMETHYL SULFOXIDE, Mitogen-activated protein kinase 1, ...
Authors:Gelin, M, Labesse, G.
Deposit date:2018-01-19
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.659 Å)
Cite:Crystal structure of ERK2 in complex with an adenosine derivative
To be published
6FJ6
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BU of 6fj6 by Molmil
Structure of Thaumatin collected at 100K on ID30B
Descriptor: GLYCEROL, L(+)-TARTARIC ACID, Thaumatin-1
Authors:McCarthy, A.A, Mueller-Dieckmann, C.
Deposit date:2018-01-20
Release date:2018-02-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:ID30B - a versatile beamline for macromolecular crystallography experiments at the ESRF.
J Synchrotron Radiat, 25, 2018
8H0B
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BU of 8h0b by Molmil
Structure of the thermolabile hemolysin from Vibrio alginolyticus (in complex with oleic acid)
Descriptor: MAGNESIUM ION, OLEIC ACID, PENTAETHYLENE GLYCOL, ...
Authors:Ma, Q, Wang, C.
Deposit date:2022-09-28
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.931 Å)
Cite:Catalytic site flexibility facilitates the substrate and catalytic promiscuity of Vibrio dual lipase/transferase.
Nat Commun, 14, 2023
5NW8
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BU of 5nw8 by Molmil
Crystal Structure of the Protein-Kinase A catalytic subunit from Criteculus Griseus in complex with compounds RKp032 and Fasudil
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5-(1,4-DIAZEPAN-1-SULFONYL)ISOQUINOLINE, UPF0418 protein FAM164A, ...
Authors:Mueller, J.M, Heine, A, Klebe, G.
Deposit date:2017-05-05
Release date:2018-05-30
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.086 Å)
Cite:Conceptional Design of Self-Assembling Bisubstrate-like Inhibitors of Protein Kinase A Resulting in a Boronic Acid Glutamate Linkage
Acs Omega, 2019
8H0A
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BU of 8h0a by Molmil
Structure of the thermolabile hemolysin from Vibrio alginolyticus (in complex with lauric acid)
Descriptor: DI(HYDROXYETHYL)ETHER, LAURIC ACID, MAGNESIUM ION, ...
Authors:Ma, Q, Wang, C.
Deposit date:2022-09-28
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Catalytic site flexibility facilitates the substrate and catalytic promiscuity of Vibrio dual lipase/transferase.
Nat Commun, 14, 2023
6FK9
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BU of 6fk9 by Molmil
Crystal structure of N2C/D282C stabilized opsin bound to RS09
Descriptor: (2~{S})-3-methyl-2-phenyl-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one, PALMITIC ACID, Rhodopsin, ...
Authors:Mattle, D, Standfuss, J, Dawson, R.
Deposit date:2018-01-23
Release date:2018-04-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Ligand channel in pharmacologically stabilized rhodopsin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8H09
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BU of 8h09 by Molmil
Structure of the thermolabile hemolysin from Vibrio alginolyticus (apo form)
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
Authors:Ma, Q, Wang, C.
Deposit date:2022-09-28
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Catalytic site flexibility facilitates the substrate and catalytic promiscuity of Vibrio dual lipase/transferase.
Nat Commun, 14, 2023
8H0C
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BU of 8h0c by Molmil
Structure of the thermolabile hemolysin from Vibrio alginolyticus (in complex with arachidonic acid)
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ARACHIDONIC ACID, MAGNESIUM ION, ...
Authors:Ma, Q, Wang, C.
Deposit date:2022-09-28
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Catalytic site flexibility facilitates the substrate and catalytic promiscuity of Vibrio dual lipase/transferase.
Nat Commun, 14, 2023
6FJ8
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BU of 6fj8 by Molmil
Structure of Thaumatin collected from an in situ crystal collected on ID30B at 12.7 keV.
Descriptor: L(+)-TARTARIC ACID, Thaumatin-1
Authors:McCarthy, A.A, Mueller-Dieckmann, C.
Deposit date:2018-01-21
Release date:2018-01-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:ID30B - a versatile beamline for macromolecular crystallography experiments at the ESRF.
J Synchrotron Radiat, 25, 2018
8GUB
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BU of 8gub by Molmil
Cryo-EM structure of cancer-specific PI3Kalpha mutant H1047R in complex with BYL-719
Descriptor: (2S)-N~1~-{4-methyl-5-[2-(1,1,1-trifluoro-2-methylpropan-2-yl)pyridin-4-yl]-1,3-thiazol-2-yl}pyrrolidine-1,2-dicarboxamide, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Liu, X, Zhou, Q, Hart, J.R, Xu, Y, Yang, S, Yang, D, Vogt, P.K, Wang, M.-W.
Deposit date:2022-09-11
Release date:2022-11-23
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Cryo-EM structures of cancer-specific helical and kinase domain mutations of PI3K alpha.
Proc.Natl.Acad.Sci.USA, 119, 2022
8GVJ
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BU of 8gvj by Molmil
Crystal structure of cMET kinase domain bound by D6808
Descriptor: (1^4Z,5^2E)-6^3-(trifluoromethyl)-5^1,5^6-dihydro-1^1H-8-aza-2(3,6)-quinolina-5(1,3)-pyridazina-1(4,1)-pyrazola-6(1,4)-benzenacyclododecaphane-5^6,7-dione, Hepatocyte growth factor receptor
Authors:Chen, Y.H, Qu, L.Z.
Deposit date:2022-09-15
Release date:2022-11-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Discovery of D6808, a Highly Selective and Potent Macrocyclic c-Met Inhibitor for Gastric Cancer Harboring MET Gene Alteration Treatment.
J.Med.Chem., 65, 2022
8H0D
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BU of 8h0d by Molmil
Structure of the thermolabile hemolysin from Vibrio alginolyticus (in complex with docosahexaenoic acid)
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID, MAGNESIUM ION, ...
Authors:Ma, Q, Wang, C.
Deposit date:2022-09-28
Release date:2023-08-16
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Catalytic site flexibility facilitates the substrate and catalytic promiscuity of Vibrio dual lipase/transferase.
Nat Commun, 14, 2023
6FI3
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BU of 6fi3 by Molmil
Crystal structure of ERK2 in complex with an adenosine derivative
Descriptor: (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-(azanyloxymethyl)oxolane-3,4-diol, DIMETHYL SULFOXIDE, Mitogen-activated protein kinase 1, ...
Authors:Gelin, M, Labesse, G.
Deposit date:2018-01-16
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Crystal structure of ERK2 in complex with an adenosine derivative
To be published
6FJZ
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BU of 6fjz by Molmil
Crystal structure of ERK2 in complex with an adenosine derivative
Descriptor: (2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)-~{N}-prop-2-ynyl-oxolane-2-carboxamide, Mitogen-activated protein kinase 1, SULFATE ION
Authors:Gelin, M, Labesse, G.
Deposit date:2018-01-23
Release date:2019-02-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.864 Å)
Cite:Crystal structure of ERK2 in complex with an adenosine derivative
To be published
6FKB
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BU of 6fkb by Molmil
Crystal structure of N2C/D282C stabilized opsin bound to RS13
Descriptor: 2-(4-chlorophenyl)-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-ethanone, 2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITIC ACID, ...
Authors:Mattle, D, Standfuss, J, Dawson, R.
Deposit date:2018-01-23
Release date:2018-04-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Ligand channel in pharmacologically stabilized rhodopsin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8GNJ
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BU of 8gnj by Molmil
Human SARM1 bounded with NMN and Nanobody-C6, Conformation 2
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, NAD(+) hydrolase SARM1, Nanobody-C6
Authors:Cai, Y, Zhang, H.
Deposit date:2022-08-24
Release date:2023-01-18
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:A conformation-specific nanobody targeting the nicotinamide mononucleotide-activated state of SARM1.
Nat Commun, 13, 2022
8GNI
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BU of 8gni by Molmil
Human SARM1 bounded with NMN and Nanobody-C6, Conformation 1
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, NAD(+) hydrolase SARM1, Nanobody C6
Authors:Cai, Y, Zhang, H.
Deposit date:2022-08-24
Release date:2023-01-18
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:A conformation-specific nanobody targeting the nicotinamide mononucleotide-activated state of SARM1.
Nat Commun, 13, 2022
8GQ5
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BU of 8gq5 by Molmil
Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure
Descriptor: NAD(+) hydrolase SARM1, Nanobody C6
Authors:Cai, Y, Zhang, H.
Deposit date:2022-08-29
Release date:2023-01-18
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A conformation-specific nanobody targeting the nicotinamide mononucleotide-activated state of SARM1.
Nat Commun, 13, 2022
8GPN
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BU of 8gpn by Molmil
Human menin in complex with H3K79Me2 nucleosome
Descriptor: DNA (177-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Lin, J, Yu, D, Lam, W.H, Dang, S, Zhai, Y, Li, X.D.
Deposit date:2022-08-26
Release date:2023-02-15
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Menin "reads" H3K79me2 mark in a nucleosomal context.
Science, 379, 2023

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PDB entries from 2024-08-21

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