PDB Search results for query - Protein Data Bank Japan

PDB: 51 results

Crystal Structure of an active site mutant, C473S, of Cdc25B Phosphatase Catalytic Domain
Descriptor:	CHLORIDE ION, M-phase inducer phosphatase 2, SULFATE ION
Authors:	Sohn, J, Parks, J, Buhrman, G, Brown, P, Kristjansdottir, K, Safi, A, Yang, W, Edelsbrunner, H, Rudolph, J.
Deposit date:	2005-06-22
Release date:	2006-01-03
Last modified:	2023-08-23
Method:	X-RAY DIFFRACTION (1.52 Å)
Cite:	Experimental Validation of the Docking Orientation of Cdc25 with Its Cdk2-CycA Protein Substrate. Biochemistry, 44, 2005

3LGW

H198P/T167V double mutant of DegS-deltaPDZ protease
Descriptor:	Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2010-01-21
Release date:	2010-08-25
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Allostery is an intrinsic property of the protease domain of DegS: implications for enzyme function and evolution. J.Biol.Chem., 285, 2010

3LGT

Y162A/H198P double mutant of DegS-deltaPDZ protease
Descriptor:	Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2010-01-21
Release date:	2010-08-25
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.68 Å)
Cite:	Allostery is an intrinsic property of the protease domain of DegS: implications for enzyme function and evolution. J.Biol.Chem., 285, 2010

3LH3

DFP modified DegS delta PDZ
Descriptor:	Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2010-01-21
Release date:	2010-08-25
Last modified:	2017-11-01
Method:	X-RAY DIFFRACTION (2.35 Å)
Cite:	Allostery is an intrinsic property of the protease domain of DegS: implications for enzyme function and evolution. J.Biol.Chem., 285, 2010

3LGI

Structure of the protease domain of DegS (DegS-deltaPDZ) at 1.65 A
Descriptor:	PHOSPHATE ION, Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2010-01-20
Release date:	2010-08-25
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (1.652 Å)
Cite:	Allostery is an intrinsic property of the protease domain of DegS: implications for enzyme function and evolution. J.Biol.Chem., 285, 2010

3GCO

Crystal structure of DegS H198P/D320A mutant modified by DFP in complex with DNRDGNVYQF OMP peptide
Descriptor:	DNRDGNVYQF peptide, Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2009-02-22
Release date:	2009-03-31
Last modified:	2021-10-20
Method:	X-RAY DIFFRACTION (2.798 Å)
Cite:	OMP peptides activate the DegS stress-sensor protease by a relief of inhibition mechanism. Structure, 17, 2009

3GCN

Crystal structure of DegS H198P/D320A mutant modified by DFP in complex with OMP peptide (YQF)
Descriptor:	Protease degS, YQF peptide
Authors:	Sohn, J, Sauer, R.T, Grant, R.A.
Deposit date:	2009-02-22
Release date:	2009-03-31
Last modified:	2021-10-20
Method:	X-RAY DIFFRACTION (3.002 Å)
Cite:	Mechanisms of allosteric activation of the DegS protease by OMP-peptide binding and protein-substrate binding To be Published

3LH1

Q191A mutant of the DegS-deltaPDZ
Descriptor:	Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2010-01-21
Release date:	2010-08-25
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.507 Å)
Cite:	Allostery is an intrinsic property of the protease domain of DegS: implications for enzyme function and evolution. J.Biol.Chem., 285, 2010

3LGU

Y162A mutant of the DegS-deltaPDZ protease
Descriptor:	Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2010-01-21
Release date:	2010-08-25
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.46 Å)
Cite:	Allostery is an intrinsic property of the protease domain of DegS: implications for enzyme function and evolution. J.Biol.Chem., 285, 2010

3LGV

H198P mutant of the DegS-deltaPDZ protease
Descriptor:	Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2010-01-21
Release date:	2010-08-25
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.734 Å)
Cite:	Allostery is an intrinsic property of the protease domain of DegS: implications for enzyme function and evolution. J.Biol.Chem., 285, 2010

3GDS

Crystal structure of DegS H198P/D320A mutant modified by DFP in complex with DNRDGNVYYF peptide
Descriptor:	DNRDGNVYYF peptide, Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2009-02-24
Release date:	2009-03-31
Last modified:	2021-10-20
Method:	X-RAY DIFFRACTION (2.85 Å)
Cite:	OMP peptides activate the DegS stress-sensor protease by a relief of inhibition mechanism. Structure, 17, 2009

3GDU

Crystal structure of DegS H198P/D320A mutant modified by DFP and in complex with YRF peptide
Descriptor:	DegS protease, YRF peptide
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2009-02-24
Release date:	2009-03-31
Last modified:	2021-10-20
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	OMP peptides activate the DegS stress-sensor protease by a relief of inhibition mechanism. Structure, 17, 2009

3GDV

Crystal structure of DegS H198P/D320A mutant modified by DFP and in complex with YQF peptide
Descriptor:	DegS protease, YQF peptide
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2009-02-24
Release date:	2009-03-31
Last modified:	2021-10-20
Method:	X-RAY DIFFRACTION (2.489 Å)
Cite:	OMP peptides activate the DegS stress-sensor protease by a relief of inhibition mechanism. Structure, 17, 2009

3LGY

R178A mutant of the DegS-deltaPDZ protease
Descriptor:	CHLORIDE ION, MAGNESIUM ION, Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2010-01-21
Release date:	2010-08-25
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Allostery is an intrinsic property of the protease domain of DegS: implications for enzyme function and evolution. J.Biol.Chem., 285, 2010

2QGR

Structure of the R178A mutant of delta PDZ DegS protease
Descriptor:	Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2007-06-29
Release date:	2007-12-11
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Allosteric activation of DegS, a stress sensor PDZ protease. Cell(Cambridge,Mass.), 131, 2007

2RCE

DFP modified DegS delta PDZ
Descriptor:	Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2007-09-19
Release date:	2007-12-11
Last modified:	2017-10-25
Method:	X-RAY DIFFRACTION (2.35 Å)
Cite:	DFP modified DegS delta PDZ To be Published

2QF3

Structure of the delta PDZ truncation of the DegS protease
Descriptor:	PHOSPHATE ION, Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2007-06-26
Release date:	2007-12-11
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2.04 Å)
Cite:	Allosteric activation of DegS, a stress sensor PDZ protease. Cell(Cambridge,Mass.), 131, 2007

2QF0

Structure of the delta PDZ truncation of the DegS protease
Descriptor:	Protease degS
Authors:	Sohn, J, Grant, R.A, Sauer, R.T.
Deposit date:	2007-06-26
Release date:	2007-12-11
Last modified:	2017-10-18
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Allosteric activation of DegS, a stress sensor PDZ protease. Cell(Cambridge,Mass.), 131, 2007

6MKS

Cryo-EM structure of NLRC4-CARD filament
Descriptor:	Chimera protein of NLR family CARD domain-containing protein 4 and EGFP
Authors:	Zheng, W, Matyszewski, M, Sohn, J, Egelman, E.H.
Deposit date:	2018-09-26
Release date:	2018-11-07
Last modified:	2024-03-13
Method:	ELECTRON MICROSCOPY (3.4 Å)
Cite:	Cryo-EM structure of the NLRC4CARDfilament provides insights into how symmetric and asymmetric supramolecular structures drive inflammasome assembly. J. Biol. Chem., 293, 2018

7K3R

Cryo-EM structure of AIM2-PYD filament
Descriptor:	Interferon-inducible protein AIM2
Authors:	Zheng, W, Matyszewski, M, Sohn, J, Egelman, E.H.
Deposit date:	2020-09-12
Release date:	2021-05-26
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	Distinct axial and lateral interactions within homologous filaments dictate the signaling specificity and order of the AIM2-ASC inflammasome. Nat Commun, 12, 2021

3B8J

Q191A mutant of DegS-deltaPDZ
Descriptor:	Protease degS
Authors:	Grant, R.A, Sohn, J, Sauer, R.T.
Deposit date:	2007-11-01
Release date:	2008-09-16
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.507 Å)
Cite:	biochemical characterization of DegS-deltaPDZ q191A mutant To be Published

8EAE

Structure of Ternary Complex of cGAS with dsDNA and Bound 5-pppG(2,5)pI
Descriptor:	Cyclic GMP-AMP synthase, MAGNESIUM ION, Palindromic DNA18, ...
Authors:	Wu, S, Sohn, J.
Deposit date:	2022-08-29
Release date:	2023-10-25
Method:	X-RAY DIFFRACTION (2.56 Å)
Cite:	Structure of Ternary Complex of cGAS with dsDNA and Bound 5-pppG(2,5)pI To Be Published

8ECC

Structure of Ternary Complex of cGAS with dsDNA and Bound 5-pppI(2,5)pA
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, MAGNESIUM ION, ...
Authors:	Wu, S, Sohn, J.
Deposit date:	2022-09-01
Release date:	2024-01-17
Method:	X-RAY DIFFRACTION (2.44 Å)
Cite:	Structure of Ternary Complex of cGAS with dsDNA and Bound 5-pppI(2,5)pA To Be Published

8GIT

Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 1mM Mn2+
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, MANGANESE (II) ION, ...
Authors:	Wu, S, Sohn, J.
Deposit date:	2023-03-14
Release date:	2024-04-17
Method:	X-RAY DIFFRACTION (2.72 Å)
Cite:	Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 1mM Mn2+ To Be Published

8GIS

Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 0.5mM Mn2+
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, MANGANESE (II) ION, ...
Authors:	Wu, S, Sohn, J.
Deposit date:	2023-03-14
Release date:	2024-04-17
Method:	X-RAY DIFFRACTION (2.46 Å)
Cite:	Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 0.5mM Mn2+ To Be Published

12 3 >

Total results:	51
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Sohn, J."