Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

9IYH
DownloadVisualize
BU of 9iyh by Molmil
Structure of Phosphopantetheine adenylyltransferase (PPAT) from Enterobacter spp. with the expression tag bound in the substrate binding site of a neighbouring molecule at 2.25 A resolution.
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, PHOSPHONOACETIC ACID, ...
Authors:Ahmad, N, Sharma, P, Sharma, S, Singh, T.P.
Deposit date:2024-07-30
Release date:2024-08-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of Phosphopantetheine adenylyltransferase (PPAT) from Enterobacter spp. with the expression tag bound in the substrate binding site of a neighbouring molecule at 2.25 A resolution.
To Be Published
9AZJ
DownloadVisualize
BU of 9azj by Molmil
Structure of ubiquitinated NEMO UBAN K285C-Ub G76C bound to HOIP NZF1
Descriptor: E3 ubiquitin-protein ligase RNF31, NF-kappa-B essential modulator, Ubiquitin, ...
Authors:Michel, M.A, Scutts, S, Komander, D.
Deposit date:2024-03-11
Release date:2024-07-31
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin
To be published
8Z3S
DownloadVisualize
BU of 8z3s by Molmil
Activation mechanism and novel binding site of the BKCa channel activator CTIBD
Descriptor: 4-[4-(4-chlorophenyl)-3-(trifluoromethyl)-1,2-oxazol-5-yl]benzene-1,3-diol, CALCIUM ION, CHOLESTEROL HEMISUCCINATE, ...
Authors:Lee, N, Kim, S, Jo, H, Lee, N.Y, Jin, M.S, Park, C.S.
Deposit date:2024-04-16
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Activation mechanism and novel binding site of the BKCa channel activator CTIBD
To Be Published
8XVT
DownloadVisualize
BU of 8xvt by Molmil
The core subcomplex of human NuA4/TIP60 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, cytoplasmic 1, ...
Authors:Chen, K, Wang, L, Yu, Z, Yu, J, Ren, Y, Wang, Q, Xu, Y.
Deposit date:2024-01-15
Release date:2024-07-24
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of the human TIP60 complex.
Nat Commun, 15, 2024
8X55
DownloadVisualize
BU of 8x55 by Molmil
BA.2.86 Spike Trimer with T356K mutation (3 RBD down)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Yue, C, Liu, P.
Deposit date:2023-11-16
Release date:2024-06-26
Last modified:2024-08-14
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Spike N354 glycosylation augments SARS-CoV-2 fitness for human adaptation through structural plasticity.
Natl Sci Rev, 11, 2024
9B0K
DownloadVisualize
BU of 9b0k by Molmil
INF2 in the Middle of F-Actin (Down state)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Palmer, N.J, Barrie, K.R, Dominguez, R.
Deposit date:2024-03-12
Release date:2024-05-29
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Mechanisms of actin filament severing and elongation by formins.
Nature, 632, 2024
8Y37
DownloadVisualize
BU of 8y37 by Molmil
Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.
Descriptor: 23S ribosomal RNA, 5S ribosomal RNA, 7-[4-[3-[[(1~{S},2~{R},5~{R},6~{S},7~{S},8~{R},9~{R},11~{R},13~{R},14~{R})-8-[(2~{S},3~{R},4~{S},6~{R})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-2-ethyl-9-methoxy-1,5,7,9,11,13-hexamethyl-4,12,16-tris(oxidanylidene)-3,17-dioxa-15-azabicyclo[12.3.0]heptadecan-6-yl]oxycarbonylamino]propoxy]but-1-ynyl]-1-methyl-4-oxidanylidene-quinoline-3-carboxylic acid, ...
Authors:Li, Y, Lu, G, Li, J, Pei, X, Lin, J.
Deposit date:2024-01-28
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Synthetic macrolides overcoming MLS B K-resistant pathogens.
Cell Discov, 10, 2024
8X81
DownloadVisualize
BU of 8x81 by Molmil
Structure of leptin-LepR trimer with a large gap
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Leptin, ...
Authors:Xie, Y.F, Gao, G.F.
Deposit date:2023-11-27
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (3.77 Å)
Cite:Structural plasticity of human leptin binding to its receptor LepR
Hlife, 1, 2023
8YYN
DownloadVisualize
BU of 8yyn by Molmil
Crystal structure of TsaGH11 complexed with beta-D-xylopyranose (Data I)
Descriptor: ACETATE ION, Endo-1,4-beta-xylanase, beta-D-xylopyranose
Authors:Nam, K.H.
Deposit date:2024-04-04
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of TsaGH11 complexed with beta-D-xylopyranose (Data I)
To Be Published
9AYL
DownloadVisualize
BU of 9ayl by Molmil
Cryo-EM structure of human Cav3.2 with ACT-709478
Descriptor: 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Fan, X, Huang, J, Yan, N.
Deposit date:2024-03-08
Release date:2024-04-24
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis for human Ca v 3.2 inhibition by selective antagonists.
Cell Res., 34, 2024
9AXC
DownloadVisualize
BU of 9axc by Molmil
Activated CRAF/MEK heterotetramer from focused refinement of CRAF/MEK/14-3-3 complex
Descriptor: Dual specificity mitogen-activated protein kinase kinase 1, GST26/CRAF chimera, N-[3-fluoro-4-({7-[(3-fluoropyridin-2-yl)oxy]-4-methyl-2-oxo-2H-1-benzopyran-3-yl}methyl)pyridin-2-yl]-N'-methylsulfuric diamide
Authors:Quade, B, Cohen, S.E, Huang, X.
Deposit date:2024-03-06
Release date:2024-04-17
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.16 Å)
Cite:The Pan-RAF-MEK Nondegrading Molecular Glue NST-628 Is a Potent and Brain-Penetrant Inhibitor of the RAS-MAPK Pathway with Activity across Diverse RAS- and RAF-Driven Cancers.
Cancer Discov, 14, 2024
9AZQ
DownloadVisualize
BU of 9azq by Molmil
INF2 at the Barbed End of F-Actin with Incoming Actin
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Palmer, N.J, Barrie, K.R, Dominguez, R.
Deposit date:2024-03-11
Release date:2024-05-29
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (3.82 Å)
Cite:Mechanisms of actin filament severing and elongation by formins.
Nature, 632, 2024
8Y91
DownloadVisualize
BU of 8y91 by Molmil
Structure of NET-nomifensine in outward-open state
Descriptor: (4S)-2-methyl-4-phenyl-3,4-dihydro-1H-isoquinolin-8-amine, CHLORIDE ION, SODIUM ION, ...
Authors:Zhang, H, Xu, E.H, Jiang, Y.
Deposit date:2024-02-06
Release date:2024-05-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Dimerization and antidepressant recognition at noradrenaline transporter.
Nature, 630, 2024
9B70
DownloadVisualize
BU of 9b70 by Molmil
Cryo-EM structure of MraY in complex with analogue 2
Descriptor: (2~{S},3~{S})-3-[(2~{S},3~{R},4~{S},5~{R})-5-(aminomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-2-[[3-[[[(2~{S})-6-azanyl-2-(hexadecanoylamino)hexanoyl]amino]methyl]phenyl]methylamino]-3-[(2~{S},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]propanoic acid, MraYAA nanobody, Phospho-N-acetylmuramoyl-pentapeptide-transferase
Authors:Hao, A, Lee, S.-Y.
Deposit date:2024-03-26
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Development of a natural product optimization strategy for inhibitors against MraY, a promising antibacterial target.
Nat Commun, 15, 2024
8WV8
DownloadVisualize
BU of 8wv8 by Molmil
Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Circadian clock oscillator protein KaiC, MAGNESIUM ION
Authors:Furuike, Y, Akiyama, S.
Deposit date:2023-10-23
Release date:2023-12-27
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (2.93 Å)
Cite:Structure-function relationship of KaiC around dawn.
Biophys Physicobio., 21, 2024
9B03
DownloadVisualize
BU of 9b03 by Molmil
INF2 in the Middle of F-Actin (Up state)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Palmer, N.J, Barrie, K.R, Dominguez, R.
Deposit date:2024-03-11
Release date:2024-05-29
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Mechanisms of actin filament severing and elongation by formins.
Nature, 632, 2024
8ZC3
DownloadVisualize
BU of 8zc3 by Molmil
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ...
Authors:Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X.
Deposit date:2024-04-28
Release date:2024-05-15
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (4.69 Å)
Cite:An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike.
Cell Rep, 43, 2024
8WOR
DownloadVisualize
BU of 8wor by Molmil
Cryo-EM structure of human SIDT1 protein with C2 symmetry at neutral pH
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Liu, W, Tang, M, Wang, J, Zhang, X, Wu, S, Ru, H.
Deposit date:2023-10-07
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Structural insights into cholesterol transport and hydrolase activity of a putative human RNA transport protein SIDT1.
Cell Discov, 10, 2024
8WZH
DownloadVisualize
BU of 8wzh by Molmil
Human erythrocyte catalase with SLS as additive during cryo-EM grid preparation
Descriptor: Catalase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yadav, S, Vinothkumar, K.R.
Deposit date:2023-11-01
Release date:2024-07-10
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Factors affecting macromolecule orientations in thin films formed in cryo-EM.
Acta Crystallogr D Struct Biol, 80, 2024
9FFD
DownloadVisualize
BU of 9ffd by Molmil
STRUCTURE OF ALDO-KETO REDUCTASE 1C3 (AKR1C3) IN COMPLEX WITH AN INHIBITOR MEDS765
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Aldo-keto reductase family 1 member C3, ...
Authors:Frydenvang, K, Hussain, S, Mirza, O.A.
Deposit date:2024-05-23
Release date:2024-08-21
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:AI Based Discovery of a New AKR1C3 Inhibitor for Anticancer Applications.
Acs Med.Chem.Lett., 15, 2024
8X1C
DownloadVisualize
BU of 8x1c by Molmil
Structure of nucleosome-bound SRCAP-C in the ADP-bound state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Yu, J, Wang, Q, Yu, Z, Li, W, Wang, L, Xu, Y.
Deposit date:2023-11-06
Release date:2024-03-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into histone exchange by human SRCAP complex.
Cell Discov, 10, 2024
8WTV
DownloadVisualize
BU of 8wtv by Molmil
Cryo-EM structure of noradrenaline transporter in complex with noradrenaline
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Noradrenaline, ...
Authors:Zhao, Y, Hu, T, Yu, Z.
Deposit date:2023-10-19
Release date:2024-08-07
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Transport and inhibition mechanisms of the human noradrenaline transporter.
Nature, 632, 2024
9EQH
DownloadVisualize
BU of 9eqh by Molmil
WWP2 WW2-2,3-linker-HECT (WWP2-LH)
Descriptor: GLYCEROL, Isoform 2 of NEDD4-like E3 ubiquitin-protein ligase WWP2, SODIUM ION
Authors:Dudey, A.P, Hemmings, A.M.
Deposit date:2024-03-21
Release date:2024-05-15
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Expanding the Inhibitor Space of the WWP1 and WWP2 HECT E3 Ligases
To Be Published
9G7H
DownloadVisualize
BU of 9g7h by Molmil
Human Sirt6 in complex with ADP-ribose and the inhibitor 2-Pr
Descriptor: 2,4-bis(oxidanylidene)-1-[2-oxidanylidene-2-[[(2S)-3-oxidanylidene-3-(propylamino)-2-[3-(3-pyridin-3-yl-1,2,4-oxadiazol-5-yl)propanoylamino]propyl]amino]ethyl]pyrimidine-5-carboxamide, NAD-dependent protein deacetylase sirtuin-6, SULFATE ION, ...
Authors:You, W, Steegborn, C.
Deposit date:2024-07-21
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Elucidating the Unconventional Binding Mode of a DNA-Encoded Library Hit Provides a Blueprint for Sirtuin 6 Inhibitor Development.
Chemmedchem, 2024
8WMV
DownloadVisualize
BU of 8wmv by Molmil
The structure of PSI-14CAC complex at stationary growth phase
Descriptor: (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol, (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Zhang, S.M, Si, L, Li, M.
Deposit date:2023-10-04
Release date:2024-05-29
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Growth phase-dependent reorganization of cryptophyte photosystem I antennae.
Commun Biol, 7, 2024

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon