Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5N07
DownloadVisualize
BU of 5n07 by Molmil
Structure of the [4Fe-4S] form of the NO response regulator NsrR
Descriptor: CHLORIDE ION, HTH-type transcriptional repressor NsrR, IRON/SULFUR CLUSTER, ...
Authors:Volbeda, A, Fontecilla-Camps, J.C.
Deposit date:2017-02-02
Release date:2017-04-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of the NO sensor NsrR reveal how its iron-sulfur cluster modulates DNA binding.
Nat Commun, 8, 2017
5FRK
DownloadVisualize
BU of 5frk by Molmil
SeMet crystal structure of Erwinia amylovora AmyR amylovoran repressor, a member of the YbjN protein family
Descriptor: AMYR
Authors:Bartho, J.D, Bellini, D, Wuerges, J, Demitri, N, Walsh, M, Benini, S.
Deposit date:2015-12-18
Release date:2017-02-15
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:The crystal structure of Erwinia amylovora AmyR, a member of the YbjN protein family, shows similarity to type III secretion chaperones but suggests different cellular functions.
PLoS ONE, 12, 2017
4YZE
DownloadVisualize
BU of 4yze by Molmil
Crystal structure of E.coli NemR reduced form
Descriptor: HTH-type transcriptional repressor NemR
Authors:Li, Y, Gray, M.J, Jakob, U, Xu, Z.
Deposit date:2015-03-24
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Does the Transcription Factor NemR Use a Regulatory Sulfenamide Bond to Sense Bleach?
Antioxid.Redox Signal., 23, 2015
5F08
DownloadVisualize
BU of 5f08 by Molmil
Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium tuberculosis in complex with compound 14 at 1.92A resolution
Descriptor: HTH-type transcriptional regulator EthR, ~{tert}-butyl ~{N}-methyl-~{N}-[[4-[4-(3-oxidanylidene-3-pyrrolidin-1-yl-propyl)piperidin-1-yl]phenyl]methyl]carbamate
Authors:Surade, S, Blaszczyk, M, Nikiforov, P.O, Abell, C, Blundell, T.L.
Deposit date:2015-11-27
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:A fragment merging approach towards the development of small molecule inhibitors of Mycobacterium tuberculosis EthR for use as ethionamide boosters.
Org.Biomol.Chem., 14, 2016
5EZG
DownloadVisualize
BU of 5ezg by Molmil
Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with compound 22 at 1.84A resolution
Descriptor: HTH-type transcriptional regulator EthR, SULFATE ION, ~{N}-[(1-pyrimidin-2-ylpiperidin-4-yl)methyl]pyrrolidine-1-carboxamide
Authors:Surade, S, Blaszczyk, M, Nikiforov, P.O, Abell, C, Blundell, T.L.
Deposit date:2015-11-26
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:A fragment merging approach towards the development of small molecule inhibitors of Mycobacterium tuberculosis EthR for use as ethionamide boosters.
Org.Biomol.Chem., 14, 2016
5F0H
DownloadVisualize
BU of 5f0h by Molmil
Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with compound 28 at 1.99A resolution
Descriptor: 3-[1-(4-cyanophenyl)piperidin-4-yl]-~{N}-[(4-piperidin-1-ylphenyl)methyl]propanamide, HTH-type transcriptional regulator EthR
Authors:Surade, S, Blaszczyk, M, Nikiforov, P.O, Abell, C, Blundell, T.L.
Deposit date:2015-11-27
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:A fragment merging approach towards the development of small molecule inhibitors of Mycobacterium tuberculosis EthR for use as ethionamide boosters.
Org.Biomol.Chem., 14, 2016
5F1J
DownloadVisualize
BU of 5f1j by Molmil
Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with compound 1 at 1.63A resolution
Descriptor: 3-cyclopentyl-1-pyrrolidin-1-yl-propan-1-one, HTH-type transcriptional regulator EthR
Authors:Surade, S, Blaszczyk, M, Nikiforov, P.O, Abell, C, Blundell, T.L.
Deposit date:2015-11-30
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.631 Å)
Cite:A fragment merging approach towards the development of small molecule inhibitors of Mycobacterium tuberculosis EthR for use as ethionamide boosters.
Org.Biomol.Chem., 14, 2016
5F0C
DownloadVisualize
BU of 5f0c by Molmil
Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium tuberculosis in complex with compound 4 at 1.87A resolution
Descriptor: 3-cyclopentyl-~{N}-(3-piperidin-1-ylphenyl)propanamide, HTH-type transcriptional regulator EthR, SULFATE ION
Authors:Surade, S, Blaszczyk, M, Nikiforov, P.O, Abell, C, Blundell, T.L.
Deposit date:2015-11-27
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:A fragment merging approach towards the development of small molecule inhibitors of Mycobacterium tuberculosis EthR for use as ethionamide boosters.
Org.Biomol.Chem., 14, 2016
5EZH
DownloadVisualize
BU of 5ezh by Molmil
Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with compound 21 at 1.7A resolution
Descriptor: HTH-type transcriptional regulator EthR, SULFATE ION, ~{N}-[(1-pyridin-2-ylpiperidin-4-yl)methyl]pyrrolidine-1-carboxamide
Authors:Surade, S, Blaszczyk, M, Nikiforov, P.O, Abell, C, Blundell, T.L.
Deposit date:2015-11-26
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A fragment merging approach towards the development of small molecule inhibitors of Mycobacterium tuberculosis EthR for use as ethionamide boosters.
Org.Biomol.Chem., 14, 2016
5F0F
DownloadVisualize
BU of 5f0f by Molmil
Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with compound 15 at 1.76A resolution
Descriptor: 4-[4-(3-oxidanylidene-3-pyrrolidin-1-yl-propyl)piperidin-1-yl]benzenecarbonitrile, HTH-type transcriptional regulator EthR, SULFATE ION
Authors:Surade, S, Blaszczyk, M, Nikiforov, P.O, Abell, C, Blundell, T.L.
Deposit date:2015-11-27
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:A fragment merging approach towards the development of small molecule inhibitors of Mycobacterium tuberculosis EthR for use as ethionamide boosters.
Org.Biomol.Chem., 14, 2016
5F27
DownloadVisualize
BU of 5f27 by Molmil
Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with compound 2 at 1.68A resolution
Descriptor: HTH-type transcriptional regulator EthR, ~{N}-methyl-1-(4-piperidin-1-ylphenyl)methanamine
Authors:Surade, S, Blaszczyk, M, Nikiforov, P.O, Abell, C, Blundell, T.L.
Deposit date:2015-12-01
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.684 Å)
Cite:A fragment merging approach towards the development of small molecule inhibitors of Mycobacterium tuberculosis EthR for use as ethionamide boosters.
Org.Biomol.Chem., 14, 2016
4XBF
DownloadVisualize
BU of 4xbf by Molmil
Structure of LSD1:CoREST in complex with ssRNA
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Lysine-specific histone demethylase 1A, ...
Authors:Luka, Z, Loukachevitch, L.V, Martin, W.J, Wagner, C, Reiter, N.J.
Deposit date:2014-12-16
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.803 Å)
Cite:G-quadruplex RNA binding and recognition by the lysine-specific histone demethylase-1 enzyme.
RNA, 22, 2016
5F04
DownloadVisualize
BU of 5f04 by Molmil
Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with compound 3 at 1.84A resolution
Descriptor: 1,2-ETHANEDIOL, 3-cyclopentyl-1-[3-[4-(methylaminomethyl)phenyl]-1,3-diazinan-1-yl]propan-1-one, GLYCEROL, ...
Authors:Surade, S, Blaszczyk, M, Nikiforov, P.O, Abell, C, Blundell, T.L.
Deposit date:2015-11-27
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:A fragment merging approach towards the development of small molecule inhibitors of Mycobacterium tuberculosis EthR for use as ethionamide boosters.
Org.Biomol.Chem., 14, 2016
5H9T
DownloadVisualize
BU of 5h9t by Molmil
Crystal structure of native NalD at resolution of 2.9, the secondary repressor of MexAB-OprM multidrug efflux pump in Pseudomonas aeruginosa
Descriptor: NalD
Authors:Chen, W.Z, Wang, D, Huang, S.Q, Hu, Q.Y, Liu, X.C, Gan, J.H, Chen, H.
Deposit date:2015-12-29
Release date:2016-04-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Novobiocin binding to NalD induces the expression of the MexAB-OprM pump in Pseudomonas aeruginosa.
Mol. Microbiol., 100, 2016
1QVU
DownloadVisualize
BU of 1qvu by Molmil
Crystal structure of the multidrug binding transcriptional repressor QacR bound to two drugs: ethidium and proflavine
Descriptor: ETHIDIUM, PROFLAVIN, Transcriptional regulator qacR
Authors:Schumacher, M.A, Miller, M.C, Brennan, R.G.
Deposit date:2003-08-28
Release date:2004-08-03
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Structural mechanism of the simultaneous binding of two drugs to a multidrug-binding protein
Embo J., 23, 2004
4G2O
DownloadVisualize
BU of 4g2o by Molmil
Human Thymidylate Synthase M190K with bound Purpurogallin
Descriptor: 2,3,4,6-tetrahydroxy-5H-benzo[7]annulen-5-one, SULFATE ION, Thymidylate synthase
Authors:Celeste, L.R, Lebioda, L.
Deposit date:2012-07-12
Release date:2013-07-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Oxidation of Cysteine 195 of Huyman Thymidylate Synthase by Purpurogallin
To be Published
4G6W
DownloadVisualize
BU of 4g6w by Molmil
Human Thymidylate Synthase M190K with bound 4-Bromobenzene-1,2,3-triol
Descriptor: 4-bromobenzene-1,2,3-triol, SULFATE ION, Thymidylate synthase
Authors:Celeste, L.R, Lebioda, L.
Deposit date:2012-07-19
Release date:2013-07-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Oxidation of Cysteine 195 of Huyman Thymidylate Synthase by Purpurogallin
To be Published, 2012
3V7S
DownloadVisualize
BU of 3v7s by Molmil
Crystal structure of Staphylococcus aureus biotin protein ligase in complex with inhibitor 0364
Descriptor: 5-methyl-3-[4-(4-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentyl}-1H-1,2,3-triazol-1-yl)butyl]-1,3-benzoxazol-2(3H)-one, Biotin ligase
Authors:Yap, M.Y, Pendini, N.R.
Deposit date:2011-12-21
Release date:2012-04-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Selective inhibition of biotin protein ligase from Staphylococcus aureus.
J.Biol.Chem., 287, 2012
4BL9
DownloadVisualize
BU of 4bl9 by Molmil
Crystal structure of full-length human Suppressor of fused (SUFU) mutant lacking a regulatory subdomain (crystal form I)
Descriptor: MALTOSE-BINDING PERIPLASMIC PROTEIN, SUPPRESSOR OF FUSED HOMOLOG, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Cherry, A.L, Finta, C, Karlstrom, M, Toftgard, R, Jovine, L.
Deposit date:2013-05-02
Release date:2013-11-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis of Sufu-GLI Interaction in Hedgehog Signalling Regulation
Acta Crystallogr.,Sect.D, 69, 2013
4BLA
DownloadVisualize
BU of 4bla by Molmil
Crystal structure of full-length human Suppressor of fused (SUFU) mutant lacking a regulatory subdomain (crystal form II)
Descriptor: MALTOSE-BINDING PERIPLASMIC PROTEIN, SUPPRESSOR OF FUSED HOMOLOG
Authors:Cherry, A.L, Finta, C, Karlstrom, M, Toftgard, R, Jovine, L.
Deposit date:2013-05-02
Release date:2013-11-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural Basis of Sufu-GLI Interaction in Hedgehog Signalling Regulation
Acta Crystallogr.,Sect.D, 69, 2013
3V7R
DownloadVisualize
BU of 3v7r by Molmil
Crystal structure of Staphylococcus aureus biotin protein ligase in complex with inhibitor
Descriptor: (3aS,4S,6aR)-4-(5-{1-[4-(6-amino-9H-purin-9-yl)butyl]-1H-1,2,3-triazol-4-yl}pentyl)tetrahydro-1H-thieno[3,4-d]imidazol-2(3H)-one, Biotin ligase
Authors:Yap, M.Y, Pendini, N.R.
Deposit date:2011-12-21
Release date:2012-12-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Selective inhibition of biotin protein ligase from Staphylococcus aureus.
J.Biol.Chem., 287, 2012
1P92
DownloadVisualize
BU of 1p92 by Molmil
Crystal Structure of (H79A)DtxR
Descriptor: BETA-MERCAPTOETHANOL, Diphtheria toxin repressor
Authors:D'Aquino, J.A, Ringe, D.
Deposit date:2003-05-08
Release date:2004-05-25
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Determinants of the SRC homology domain 3-like fold.
J.Bacteriol., 185, 2003
4EGY
DownloadVisualize
BU of 4egy by Molmil
Crystal Structure of AraR(DBD) in complex with operator ORA1
Descriptor: 5'-D(*AP*AP*AP*AP*TP*TP*GP*TP*TP*CP*GP*TP*AP*CP*AP*AP*AP*TP*AP*TP*T)-3', 5'-D(*TP*AP*AP*TP*AP*TP*TP*TP*GP*TP*AP*CP*GP*AP*AP*CP*AP*AP*TP*TP*T)-3', ACETATE ION, ...
Authors:Jain, D, Nair, D.T.
Deposit date:2012-04-02
Release date:2013-02-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Spacing between core recognition motifs determines relative orientation of AraR monomers on bipartite operators.
Nucleic Acids Res., 41, 2013
5NVM
DownloadVisualize
BU of 5nvm by Molmil
Crystal structure of the human 4EHP-GIGYF2 complex lacking the auxiliary sequences
Descriptor: Eukaryotic translation initiation factor 4E type 2, GRB10-interacting GYF protein 2, PHOSPHATE ION
Authors:Peter, D, Valkov, E.
Deposit date:2017-05-04
Release date:2017-07-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:GIGYF1/2 proteins use auxiliary sequences to selectively bind to 4EHP and repress target mRNA expression.
Genes Dev., 31, 2017
4H0E
DownloadVisualize
BU of 4h0e by Molmil
Crystal Structure of mutant ORR3 in complex with NTD of AraR
Descriptor: 5'-D(*AP*AP*AP*TP*TP*TP*GP*TP*CP*CP*GP*TP*AP*CP*AP*TP*TP*TP*TP*AP*T)-3', 5'-D(*TP*AP*TP*AP*AP*AP*AP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*AP*AP*TP*T)-3', ACETATE ION, ...
Authors:Nair, D.T, Jain, D.
Deposit date:2012-09-08
Release date:2013-02-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.973 Å)
Cite:Spacing between core recognition motifs determines relative orientation of AraR monomers on bipartite operators.
Nucleic Acids Res., 41, 2013

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon