Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 55 results

5F1C
DownloadVisualize
BU of 5f1c by Molmil
Crystal structure of an invertebrate P2X receptor from the Gulf Coast tick in the presence of ATP and Zn2+ ion at 2.9 Angstroms
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Putative uncharacterized protein, ...
Authors:Kasuya, G, Hattori, M, Ishitani, R, Nureki, O.
Deposit date:2015-11-30
Release date:2016-03-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels
Cell Rep, 14, 2016
3H9V
DownloadVisualize
BU of 3h9v by Molmil
Crystal structure of the ATP-gated P2X4 ion channel in the closed, apo state at 3.1 Angstroms
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GADOLINIUM ATOM, P2X purinoceptor
Authors:Kawate, T, Michel, J.C, Gouaux, E.
Deposit date:2009-04-30
Release date:2009-07-28
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of the ATP-gated P2X(4) ion channel in the closed state.
Nature, 460, 2009
4DW1
DownloadVisualize
BU of 4dw1 by Molmil
Crystal structure of the ATP-gated P2X4 ion channel in the ATP-bound, open state at 2.8 Angstroms
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ...
Authors:Hattori, M, Gouaux, E.
Deposit date:2012-02-24
Release date:2012-04-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular mechanism of ATP binding and ion channel activation in P2X receptors.
Nature, 485, 2012
3I5D
DownloadVisualize
BU of 3i5d by Molmil
Crystal structure of the ATP-gated P2X4 ion channel in the closed, apo state at 3.5 Angstroms (R3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, P2X purinoceptor
Authors:Kawate, T, Michel, J.C, Gouaux, E.
Deposit date:2009-07-05
Release date:2009-08-04
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (3.46 Å)
Cite:Crystal structure of the ATP-gated P2X(4) ion channel in the closed state.
Nature, 460, 2009
4DW0
DownloadVisualize
BU of 4dw0 by Molmil
Crystal structure of the ATP-gated P2X4 ion channel in the closed, apo state at 2.9 Angstroms
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GADOLINIUM ATOM, GLYCEROL, ...
Authors:Hattori, M, Gouaux, E.
Deposit date:2012-02-24
Release date:2012-04-25
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular mechanism of ATP binding and ion channel activation in P2X receptors.
Nature, 485, 2012
9IK1
DownloadVisualize
BU of 9ik1 by Molmil
Cryo-EM structure of the human P2X3 receptor-compound 26a complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[2-cyclopropyl-7-[[(1~{R})-1-naphthalen-2-ylethyl]amino]-[1,2,4]triazolo[1,5-a]pyrimidin-5-yl]piperazine-1-carboxamide, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Kim, S, Kim, G.R, Kim, Y.O, Han, X, Nagel, J, Kim, J, Song, D.I, Muller, C.E, Yoon, M.H, Jin, M.S, Kim, Y.C.
Deposit date:2024-06-26
Release date:2024-09-04
Last modified:2024-11-27
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Discovery of Triazolopyrimidine Derivatives as Selective P2X3 Receptor Antagonists Binding to an Unprecedented Allosteric Site as Evidenced by Cryo-Electron Microscopy.
J.Med.Chem., 67, 2024
6AH5
DownloadVisualize
BU of 6ah5 by Molmil
Structure of human P2X3 receptor in complex with ATP and Mg2+ ion
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Hattori, M.
Deposit date:2018-08-16
Release date:2019-06-12
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.819 Å)
Cite:Molecular mechanisms of human P2X3 receptor channel activation and modulation by divalent cation bound ATP.
Elife, 8, 2019
6AH4
DownloadVisualize
BU of 6ah4 by Molmil
Structure of human P2X3 receptor in complex with ATP and Ca2+ ion
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Hattori, M.
Deposit date:2018-08-16
Release date:2019-06-12
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.296 Å)
Cite:Molecular mechanisms of human P2X3 receptor channel activation and modulation by divalent cation bound ATP.
Elife, 8, 2019
5YVE
DownloadVisualize
BU of 5yve by Molmil
Crystal structure of human P2X3 receptor in complex with the AF-219 negative allosteric modulator
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-[2,4-bis(azanyl)pyrimidin-5-yl]oxy-2-methoxy-4-propan-2-yl-benzenesulfonamide, MAGNESIUM ION, ...
Authors:Wang, Y, Hattori, M.
Deposit date:2017-11-25
Release date:2018-04-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Druggable negative allosteric site of P2X3 receptors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
9LXC
DownloadVisualize
BU of 9lxc by Molmil
Cryo-EM structure of the P2X1 receptor bound to NF449
Descriptor: 4,4',4'',4'''-{carbonylbis[azanediylbenzene-5,1,3-triylbis(carbonylazanediyl)]}tetra(benzene-1,3-disulfonic acid), CHOLESTEROL, P2X purinoceptor 1
Authors:Qiang, Y, Chen, K.
Deposit date:2025-02-17
Release date:2025-04-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of the multiple ligand binding mechanisms of the P2X1 receptor.
Acta Pharmacol.Sin., 2025
9LX5
DownloadVisualize
BU of 9lx5 by Molmil
Cryo-EM structure of the P2X1 receptor bound to ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHOLESTEROL, P2X purinoceptor 1
Authors:Qiang, Y, Chen, K.
Deposit date:2025-02-17
Release date:2025-04-16
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis of the multiple ligand binding mechanisms of the P2X1 receptor.
Acta Pharmacol.Sin., 2025
5U1L
DownloadVisualize
BU of 5u1l by Molmil
Crystal structure of the ATP-gated P2X7 ion channel in the closed, apo state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, P2X purinoceptor
Authors:Karasawa, A, Kawate, T.
Deposit date:2016-11-28
Release date:2017-01-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural basis for subtype-specific inhibition of the P2X7 receptor.
Elife, 5, 2016
5U1V
DownloadVisualize
BU of 5u1v by Molmil
Crystal structure of the ATP-gated P2X7 ion channel bound to allosteric antagonist A804598
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, N-cyano-N'-[(1R)-1-phenylethyl]-N''-quinolin-5-ylguanidine, ...
Authors:Karasawa, A, Kawate, T.
Deposit date:2016-11-29
Release date:2017-01-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural basis for subtype-specific inhibition of the P2X7 receptor.
Elife, 5, 2016
5U1W
DownloadVisualize
BU of 5u1w by Molmil
Crystal structure of the ATP-gated P2X7 ion channel bound to allosteric antagonist AZ10606120
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, N-[2-({2-[(2-hydroxyethyl)amino]ethyl}amino)quinolin-5-yl]-2-[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]decan-1-yl]acetamide, ...
Authors:Karasawa, A, Kawate, T.
Deposit date:2016-11-29
Release date:2017-01-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.501 Å)
Cite:Structural basis for subtype-specific inhibition of the P2X7 receptor.
Elife, 5, 2016
8JV5
DownloadVisualize
BU of 8jv5 by Molmil
Cryo-EM structure of the zebrafish P2X4 receptor in complex with BX430
Descriptor: 1-[2,6-bis(bromanyl)-4-propan-2-yl-phenyl]-3-pyridin-3-yl-urea, 2-acetamido-2-deoxy-beta-D-glucopyranose, P2X purinoceptor
Authors:Hattori, M, Shen, C.
Deposit date:2023-06-27
Release date:2023-10-18
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Structural insights into the allosteric inhibition of P2X4 receptors.
Nat Commun, 14, 2023
8JV6
DownloadVisualize
BU of 8jv6 by Molmil
Cryo-EM structure of the zebrafish P2X4 receptor in complex with BAY-1797
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, N-[4-(3-chloranylphenoxy)-3-sulfamoyl-phenyl]-2-phenyl-ethanamide, P2X purinoceptor
Authors:Hattori, M, Shen, C.
Deposit date:2023-06-27
Release date:2023-10-18
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Structural insights into the allosteric inhibition of P2X4 receptors.
Nat Commun, 14, 2023
8JV7
DownloadVisualize
BU of 8jv7 by Molmil
Cryo-EM structure of the panda P2X7 receptor in complex with PPADS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[(E)-[4-methanoyl-6-methyl-5-oxidanyl-3-(phosphonooxymethyl)pyridin-2-yl]diazenyl]benzene-1,3-disulfonic acid, P2X purinoceptor
Authors:Sheng, D, Hattori, M.
Deposit date:2023-06-27
Release date:2023-11-29
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural insights into the orthosteric inhibition of P2X receptors by non-ATP analog antagonists.
Elife, 12, 2024
8JV8
DownloadVisualize
BU of 8jv8 by Molmil
Cryo-EM structure of the panda P2X7 receptor in complex with PPNDS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]-7-nitronaphthalene-1,5-disulfonic acid, P2X purinoceptor
Authors:Sheng, D, Hattori, M.
Deposit date:2023-06-27
Release date:2023-11-29
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Structural insights into the orthosteric inhibition of P2X receptors by non-ATP analog antagonists.
Elife, 12, 2024
5WZY
DownloadVisualize
BU of 5wzy by Molmil
Crystal structure of the P2X4 receptor from zebrafish in the presence of CTP at 2.8 Angstroms
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CYTIDINE-5'-TRIPHOSPHATE, GLYCEROL, ...
Authors:Kasuya, G, Hattori, M, Nureki, O.
Deposit date:2017-01-19
Release date:2017-04-05
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.799 Å)
Cite:Structural insights into the nucleotide base specificity of P2X receptors
Sci Rep, 7, 2017
8Z1D
DownloadVisualize
BU of 8z1d by Molmil
Cryo-EM structure of the panda P2X7 receptor in complex with PSFL1191
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, P2X purinoceptor, PSFL1191
Authors:Sheng, D, Hattori, M.
Deposit date:2024-04-11
Release date:2025-04-16
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structure of the panda P2X7 receptor in complex with PSFL1191
To Be Published
8Z0Z
DownloadVisualize
BU of 8z0z by Molmil
Cryo-EM structure of the panda P2X7 receptor in complex with JNJ-54175446
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, P2X purinoceptor, [2-chloranyl-3-(trifluoromethyl)phenyl]-[(4~{R})-1-(5-fluoranylpyrimidin-2-yl)-4-methyl-6,7-dihydro-4~{H}-[1,2,3]triazolo[4,5-c]pyridin-5-yl]methanone
Authors:Sheng, D, Hattori, M.
Deposit date:2024-04-10
Release date:2025-04-16
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Cryo-EM structure of the panda P2X7 receptor in complex with JNJ-54175446
To Be Published
9C2C
DownloadVisualize
BU of 9c2c by Molmil
Cryo-EM structure of the human P2X1 receptor in the NF449-bound inhibited state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4,4',4'',4'''-{carbonylbis[azanediylbenzene-5,1,3-triylbis(carbonylazanediyl)]}tetra(benzene-1,3-disulfonic acid), P2X purinoceptor 1
Authors:Oken, A.C, Lisi, N.E, Ditter, I.A, Shi, H, Mansoor, S.E.
Deposit date:2024-05-30
Release date:2024-10-09
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo-EM structures of the human P2X1 receptor reveal subtype-specific architecture and antagonism by supramolecular ligand-binding.
Nat Commun, 15, 2024
9C2B
DownloadVisualize
BU of 9c2b by Molmil
Cryo-EM structure of the human P2X1 receptor in the ATP-bound desensitized state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Oken, A.C, Lisi, N.E, Ditter, I.A, Shi, H, Mansoor, S.E.
Deposit date:2024-05-30
Release date:2024-10-09
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (2.42 Å)
Cite:Cryo-EM structures of the human P2X1 receptor reveal subtype-specific architecture and antagonism by supramolecular ligand-binding.
Nat Commun, 15, 2024
9C2A
DownloadVisualize
BU of 9c2a by Molmil
Cryo-EM structure of the human P2X1 receptor in the apo closed state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, ...
Authors:Oken, A.C, Lisi, N.E, Ditter, I.A, Shi, H, Mansoor, S.E.
Deposit date:2024-05-30
Release date:2024-10-09
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Cryo-EM structures of the human P2X1 receptor reveal subtype-specific architecture and antagonism by supramolecular ligand-binding.
Nat Commun, 15, 2024
9C48
DownloadVisualize
BU of 9c48 by Molmil
Cryo-EM structure of the full-length human P2X4 receptor in the ATP-bound desensitized state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Shi, H, Ditter, I.A, Oken, A.C, Mansoor, S.E.
Deposit date:2024-06-03
Release date:2025-01-29
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Human P2X4 receptor gating is modulated by a stable cytoplasmic cap and a unique allosteric pocket.
Sci Adv, 11, 2025

 

123>

236060

PDB entries from 2025-05-14

PDB statisticsPDBj update infoContact PDBjnumon