PDB: 316 件ウェブページステータス検索Chemie searchBIRD

---

6WLH	RNA complex of WT1 zinc finger transcription factor 分子名称: RNA (29-MER), Wilms tumor protein, ZINC ION 著者 Wright, P.E, Dyson, H.J. 登録日 2020-04-20 公開日 2021-03-03 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 RNA Binding by the KTS Splice Variants of Wilms' Tumor Suppressor Protein WT1. Biochemistry, 59, 2020
1F2I	COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA 分子名称: 5'-D(*AP*TP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*AP*T)-3', FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12, ZINC ION 著者 Wang, B.S, Grant, R.A, Pabo, C.O. 登録日 2000-05-25 公開日 2001-09-14 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Selected peptide extension contacts hydrophobic patch on neighboring zinc finger and mediates dimerization on DNA. Nat.Struct.Biol., 8, 2001
9AZI	NMR solution structure of cell-permeant miniature protein ZF5.3 分子名称: Designed Zinc finger protein 5.3, ZINC ION 著者 Giudice, J.A, Kelly, M, Schepartz, A. 登録日 2024-03-11 公開日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural and mechanistic basis for efficient endosomal escape by designed mini-proteins To be published
4X9J	EGR-1 with Doubly Methylated DNA 分子名称: DNA (5'-D(*AP*GP*(5CM)P*GP*TP*GP*GP*GP*(5CM)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5CM)P*GP*CP*CP*CP*AP*(5CM)P*GP*C)-3'), Early growth response protein 1, ... 著者 White, M.A, Zandarashvili, L, Iwahara, J. 登録日 2014-12-11 公開日 2015-05-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.412 Å) 主引用文献 Structural impact of complete CpG methylation within target DNA on specific complex formation of the inducible transcription factor Egr-1. Febs Lett., 589, 2015
4F2J	Crystal structure of ZNF217 bound to DNA, P6522 crystal form 分子名称: 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3', ZINC ION, Zinc finger protein 217 著者 Vandevenne, M.S, Jacques, D.A, Guss, J.M, Mackay, J.P. 登録日 2012-05-08 公開日 2013-02-27 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 New insights into DNA recognition by zinc fingers revealed by structural analysis of the oncoprotein ZNF217 J.Biol.Chem., 288, 2013
5N14	NMR structure calculation of a composite Cys2His2 type zinc finger protein containing a non-peptide (or oligourea) helical domain 分子名称: Protein (chimeric oligourea-peptide zinc finger), ZINC ION 著者 Venkateshaiah M, V.K, Salgado, G. 登録日 2017-02-05 公開日 2017-04-12 最終更新日 2023-11-15 実験手法 SOLUTION NMR 主引用文献 NMR structure calculation of a composite Cys2His2 type zinc finger protein containing a non-peptide (or oligourea) helical domain. To Be Published
6E93	Crystal Structure of ZBTB38 C-terminal Zinc Fingers 6-9 in complex with methylated DNA 分子名称: DNA (5'-D(*GP*CP*AP*CP*TP*CP*AP*TP*(DCM)P*GP*GP*(DCM)P*GP*CP*AP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*TP*GP*(DCM)P*GP*CP*(DCM)P*GP*AP*TP*GP*AP*GP*TP*GP*C)-3'), ZINC ION, ... 著者 Hudson, N.O, Whitby, F.G, Buck-Koehntop, B.A. 登録日 2018-07-31 公開日 2018-11-07 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.747 Å) 主引用文献 Structural insights into methylated DNA recognition by the C-terminal zinc fingers of the DNA reader protein ZBTB38. J. Biol. Chem., 293, 2018
4GZN	Mouse ZFP57 zinc fingers in complex with methylated DNA 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ... 著者 Liu, Y, Zhang, X, Cheng, X. 登録日 2012-09-06 公開日 2012-10-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (0.99 Å) 主引用文献 An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence. Genes Dev., 26, 2012
6KI6	Crystal structure of BCL11A in complex with gamma-globin -115 HPFH region 分子名称: B-cell lymphoma/leukemia 11A, DNA (5'-D(*AP*TP*AP*TP*TP*GP*GP*TP*CP*AP*AP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*TP*TP*GP*AP*CP*CP*AP*AP*TP*A)-3'), ... 著者 Li, F.D, Yang, Y, Shi, Y.Y. 登録日 2019-07-17 公開日 2019-09-11 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural insights into the recognition of gamma-globin gene promoter by BCL11A. Cell Res., 29, 2019
7EYI	Crystal structure of ZBTB7A in complex with gamma-globin -200 sequence element with C-194A mutation 分子名称: BORIC ACID, DNA (5'-D(*AP*TP*AP*GP*GP*GP*CP*CP*CP*CP*TP*TP*CP*CP*CP*AP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*TP*GP*GP*GP*AP*AP*GP*GP*GP*GP*CP*CP*CP*TP*A)-3'), ... 著者 Yang, Y, Shi, Y.Y. 登録日 2021-05-31 公開日 2021-09-01 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.401 Å) 主引用文献 Structural basis for human ZBTB7A action at the fetal globin promoter. Cell Rep, 36, 2021
1G2F	STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) 分子名称: 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3', TATA BOX ZINC FINGER PROTEIN, ... 著者 Wolfe, S.A, Grant, R.A, Elrod-Erickson, M, Pabo, C.O. 登録日 2000-10-18 公開日 2001-09-07 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes. Structure, 9, 2001
8A4I	Crystal structure of SALL4 zinc finger cluster 4 with AT-rich DNA 分子名称: DNA (5'-D(*GP*AP*TP*AP*TP*TP*AP*AP*TP*AP*TP*C)-3'), MAGNESIUM ION, Sal-like protein 4, ... 著者 Watson, J.A, Pantier, R, Jayachandran, U, Chhatbar, K, Alexander-Howden, B, Kruusvee, V, Prendecki, M, Bird, A, Cook, A.G. 登録日 2022-06-11 公開日 2023-01-11 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 Structure of SALL4 zinc finger domain reveals link between AT-rich DNA binding and Okihiro syndrome. Life Sci Alliance, 6, 2023
1G2D	STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2) 分子名称: 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3', TATA BOX ZINC FINGER PROTEIN, ... 著者 Wolfe, S.A, Grant, R.A, Elrod-Erickson, M, Pabo, C.O. 登録日 2000-10-18 公開日 2001-09-07 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes. Structure, 9, 2001
7TXC	HIC2 zinc finger domain in complex with the DNA binding motif-2 of the BCL11A enhancer 分子名称: DNA (5'-D(*AP*CP*TP*GP*TP*TP*GP*GP*CP*AP*TP*TP*AP*TP*CP*T)-3'), DNA (5'-D(*AP*GP*AP*TP*AP*AP*TP*GP*CP*CP*AP*AP*CP*AP*GP*T)-3'), Hypermethylated in cancer 2 protein, ... 著者 Horton, J.R, Ren, R, Cheng, X. 登録日 2022-02-08 公開日 2022-06-01 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.04 Å) 主引用文献 HIC2 controls developmental hemoglobin switching by repressing BCL11A transcription. Nat.Genet., 54, 2022
4ZNF	HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF A SINGLE ZINC FINGER FROM A HUMAN ENHANCER BINDING PROTEIN IN SOLUTION 分子名称: ZINC FINGER, ZINC ION 著者 Gronenborn, A.M, Clore, G.M, Omichinski, J.G. 登録日 1990-07-09 公開日 1992-01-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 High-resolution three-dimensional structure of a single zinc finger from a human enhancer binding protein in solution. Biochemistry, 29, 1990
8H9H	Crystal structure of ZBTB7A in complex with GACCC-containing sequence 分子名称: DNA (5'-D(*TP*AP*AP*GP*GP*AP*CP*CP*CP*AP*GP*AP*T)-3'), DNA (5'-D(P*AP*AP*TP*CP*TP*GP*GP*GP*TP*CP*CP*TP*T)-3'), ZINC ION, ... 著者 Yang, Y. 登録日 2022-10-25 公開日 2023-04-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 ZBTB7A regulates primed-to-naive transition of pluripotent stem cells via recognition of the PNT-associated sequence by zinc fingers 1-2 and recognition of gamma-globin -200 gene element by zinc fingers 1-4. Febs J., 290, 2023
6U9Q	Crystal Structure Analysis of DNA-BCL11A Znf domain complex 分子名称: B-cell lymphoma/leukemia 11A, DNA3, DNA5, ... 著者 Seo, H.-S, Dhe-Paganon, S. 登録日 2019-09-09 公開日 2020-09-16 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Crystal Structure Analysis of TAF1 Bromodomain To Be Published
5A7U	Single-particle cryo-EM of co-translational folded adr1 domain inside the E. coli ribosome exit tunnel. 分子名称: REGULATORY PROTEIN ADR1, ZINC ION 著者 Nilsson, O.B, Hedman, R, Marino, J, Wickles, S, Bischoff, L, Johansson, M, Muller-Lucks, A, Trovato, F, Puglisi, J.D, O'Brien, E, Beckmann, R, von Heijne, G. 登録日 2015-07-10 公開日 2015-09-16 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Cotranslational Protein Folding Inside the Ribosome Exit Tunnel. Cell Rep., 12, 2015
5T0U	CTCF ZnF2-7 and DNA complex structure 分子名称: DNA (5'-D(*CP*CP*TP*CP*AP*CP*TP*AP*GP*CP*GP*CP*CP*CP*CP*CP*TP*GP*CP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*GP*CP*GP*CP*TP*AP*GP*TP*GP*AP*GP*G)-3'), Transcriptional repressor CTCF, ... 著者 Hashimoto, H, Wang, D, Cheng, X. 登録日 2016-08-16 公開日 2017-05-24 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.199 Å) 主引用文献 Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol. Cell, 66, 2017
5T00	Human CTCF ZnF3-7 and methylated DNA complex 分子名称: DNA (5'-GCCAGCAGGGGG(5CM)GCTA-3'), DNA (5'-TAG(5CM)GCCCCCTGCTGGC-3'), Transcriptional repressor CTCF, ... 著者 Hashimoto, H, Wang, D, Cheng, X. 登録日 2016-08-15 公開日 2017-05-24 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol. Cell, 66, 2017
4IS1	Crystal structure of ZNF217 bound to DNA 分子名称: 5'-D(*AP*AP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3', 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3', CHLORIDE ION, ... 著者 Vandevenne, M.S, Jacques, D.A, Guss, J.M, Mackay, J.P. 登録日 2013-01-16 公開日 2013-02-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 New insights into DNA recognition by zinc fingers revealed by structural analysis of the oncoprotein ZNF217. J.Biol.Chem., 288, 2013
6E94	Crystal Structure of ZBTB38 C-terminal Zinc Fingers 6-9 K1055R in complex with methylated DNA 分子名称: DNA (5'-D(*GP*CP*AP*CP*TP*CP*AP*TP*(DCM)P*GP*GP*(DCM)P*GP*CP*AP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*TP*GP*(DCM)P*GP*CP*(DCM)P*GP*AP*TP*GP*AP*GP*TP*GP*C)-3'), ZINC ION, ... 著者 Hudson, N.O, Whitby, F.G, Buck-Koehntop, B.A. 登録日 2018-07-31 公開日 2018-11-07 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.594 Å) 主引用文献 Structural insights into methylated DNA recognition by the C-terminal zinc fingers of the DNA reader protein ZBTB38. J. Biol. Chem., 293, 2018
5EH2	Human PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA Sequence III 分子名称: DNA (5'-D(*AP*CP*AP*CP*GP*TP*GP*GP*CP*TP*AP*GP*GP*GP*AP*GP*GP*CP*CP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*GP*GP*CP*CP*TP*CP*CP*CP*TP*AP*GP*CP*CP*AP*CP*GP*TP*G)-3'), Histone-lysine N-methyltransferase PRDM9, ... 著者 Patel, A, Horton, J.R, Wilson, G.G, Zhang, X, Cheng, X. 登録日 2015-10-27 公開日 2016-02-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural basis for human PRDM9 action at recombination hot spots. Genes Dev., 30, 2016
5EI9	Human PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA Sequence I 分子名称: DNA (5'-D(*AP*TP*CP*CP*AP*CP*GP*TP*GP*GP*CP*TP*AP*GP*GP*GP*AP*GP*GP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*CP*CP*TP*CP*CP*CP*TP*AP*GP*CP*CP*AP*CP*GP*TP*GP*GP*A)-3'), Histone-lysine N-methyltransferase PRDM9, ... 著者 Patel, A, Horton, J.R, Wilson, G.G, Zhang, X, Cheng, X. 登録日 2015-10-29 公開日 2016-02-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.921 Å) 主引用文献 Structural basis for human PRDM9 action at recombination hot spots. Genes Dev., 30, 2016
5EGB	Human PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA Sequence II 分子名称: DNA (5'-D(*AP*CP*CP*AP*CP*GP*TP*GP*GP*CP*TP*AP*GP*GP*GP*AP*GP*GP*CP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*GP*CP*CP*TP*CP*CP*CP*TP*AP*GP*CP*CP*AP*CP*GP*TP*GP*G)-3'), Histone-lysine N-methyltransferase PRDM9, ... 著者 Patel, A, Horton, J.R, Wilson, G.G, Zhang, X, Cheng, X. 登録日 2015-10-26 公開日 2016-02-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.977 Å) 主引用文献 Structural basis for human PRDM9 action at recombination hot spots. Genes Dev., 30, 2016

 

12345678910111213>