9CJA

Formerly degenerate seventh zinc finger domain from transcription factor ZNF711 rehabilitated by experimental NMR structure

Replaces:  8VG3

Summary for 9CJA

• Entry DOI: 10.2210/pdb9cja/pdb
• NMR Information: BMRB: 52210
• Descriptor: Zinc finger protein 711, ZINC ION (2 entities in total)
• Functional Keywords: znf711, cmpx1, xlid97, degenerate zinc finger, metal binding protein
• Biological source: Homo sapiens (human)
• Total number of polymer chains: 1
• Total formula weight: 3382.14

Authors

Rua, A.J.,Alexandrescu, A.T. (deposition date: 2024-07-05, release date: 2024-07-17, Last modification date: 2024-10-09)

Primary citation

Rua, A.J.,Alexandrescu, A.T.
Formerly degenerate seventh zinc finger domain from transcription factor ZNF711 rehabilitated by experimental NMR structure.
Protein Sci., 33:e5149-e5149, 2024

PubMed Abstract: Domain Z7 of nuclear transcription factor ZNF711 has the consensus last metal-ligand H23 found in odd-numbered zinc fingers of this protein replaced by a phenylalanine. Ever since the discovery of ZNF711, it has been thought that Z7 is probably non-functional because of the H23F substitution. The presence of H26 three positions downstream prompted us to examine if this histidine could substitute as the last metal-ligand. The Z7 domain adopts a stable tertiary structure upon metal-binding. The NMR structure of Zn-bound Z7 shows the classical ββα-fold of CCHH zinc fingers. Mutagenesis and pH titration experiments indicate that H26 is not involved in metal binding and that Z7 has a tridentate metal-binding site comprised of only residues C3, C6, and H19. By contrast, an F23H mutation that introduces a histidine in the consensus position forms a tetradentate ligand. The structure of the WT Z7 is stable causing restricted ring-flipping of phenylalanines 10 and 23. Dynamics are increased with either the H26A or F23H substitutions and aromatic ring rotation is no longer hindered in the two mutants. The mutations have only small effects on the K values for Zn and Co and retain the high thermal stability of the WT domain above 80°C. Like two previously reported designed zinc fingers with the last ligand replaced by water, the WT Z7 domain is catalytically active, hydrolyzing 4-nitrophenyl acetate. We discuss the implications of naturally occurring tridentate zinc fingers for cancer mutations and drug targeting of notoriously undruggable transcription factors.

PubMed: 39180464
DOI: 10.1002/pro.5149

Experimental method

SOLUTION NMR