PDB: 1546 件ウェブページステータス検索Chemie searchBIRD

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4V6D	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Zhang, W, Dunkle, J.A, Cate, J.H.D. 登録日 2009-06-27 公開日 2014-07-09 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.814 Å) 主引用文献 Structures of the ribosome in intermediate States of ratcheting. Science, 325, 2009
4V6A	Structure of EF-P bound to the 70S ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Stanley, R.E, Blaha, G. 登録日 2009-06-15 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Formation of the first peptide bond: the structure of EF-P bound to the 70S ribosome. Science, 325, 2009
3HP7	Putative hemolysin from Streptococcus thermophilus. 分子名称: ETHANOL, Hemolysin, putative 著者 Osipiuk, J, Hatzos, C, Cobb, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2009-06-03 公開日 2009-06-16 最終更新日 2017-11-01 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 X-ray crystal structure of putative hemolysin from Streptococcus thermophilus. To be Published
4V5E	Insights into translational termination from the structure of RF2 bound to the ribosome 分子名称: 16S ribosomal RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Weixlbaumer, A, Jin, H, Neubauer, C, Voorhees, R.M, Petry, S, Kelley, A.C, Ramakrishnan, V. 登録日 2009-04-30 公開日 2014-07-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 Insights Into Translational Termination from the Structure of Rf2 Bound to the Ribosome. Science, 322, 2008
4V5C	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. 分子名称: 16S ribosomal RNA, 23S Ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Voorhees, R.M, Weixlbaumer, A, Loakes, D, Kelley, A.C, Ramakrishnan, V. 登録日 2009-03-24 公開日 2014-07-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Insights Into Substrate Stabilization from Snapshots of the Peptidyl Transferase Center of the Intact 70S Ribosome Nat.Struct.Mol.Biol., 16, 2009
4V5D	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. 分子名称: 16S ribosomal RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Voorhees, R.M, Weixlbaumer, A, Loakes, D, Kelley, A.C, Ramakrishnan, V. 登録日 2009-03-24 公開日 2014-07-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome. Nat. Struct. Mol. Biol., 16, 2009
4V69	Ternary complex-bound E.coli 70S ribosome. 分子名称: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Villa, E, Sengupta, J, Trabuco, L.G, LeBarron, J, Baxter, W.T, Shaikh, T.R, Grassucci, R.A, Nissen, P, Ehrenberg, M, Schulten, K, Frank, J. 登録日 2008-12-11 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (6.7 Å) 主引用文献 Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis Proc.Natl.Acad.Sci.USA, 106, 2009
4V68	T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Schuette, J.-C, Spahn, C.M.T. 登録日 2008-12-11 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (6.4 Å) 主引用文献 GTPase activation of elongation factor EF-Tu by the ribosome during decoding Embo J., 28, 2009
4V67	Crystal structure of a translation termination complex formed with release factor RF2. 分子名称: 16S RRNA, 23S RRNA, 30S ribosomal protein S10, ... 著者 Korostelev, A, Asahara, H, Lancaster, L, Laurberg, M, Hirschi, A, Noller, H.F. 登録日 2008-10-27 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structure of a translation termination complex formed with release factor RF2. Proc.Natl.Acad.Sci.USA, 105, 2008
4V65	Structure of the E. coli ribosome in the Pre-accommodation state 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Devkota, B, Caulfield, T.R, Tan, R.-Z, Harvey, S.C. 登録日 2008-08-03 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (9 Å) 主引用文献 The Structure of the E. coli Ribosome Before and After Accommodation: Implications for Proofreading To be Published
4V66	Structure of the E. coli ribosome and the tRNAs in Post-accommodation state 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Devkota, B, Caulfield, T.R, Tan, R.-Z, Harvey, S.C. 登録日 2008-08-03 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (9 Å) 主引用文献 The Structure of the E. coli Ribosome Before and After Accommodation: Implications for Proofreading To be Published
2K6P	Solution Structure of hypothetical protein, HP1423 分子名称: Uncharacterized protein HP_1423 著者 Kim, J, Park, S, Lee, K, Son, W, Sohn, N, Lee, B. 登録日 2008-07-15 公開日 2009-06-16 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of hypothetical protein HP1423 (Y1423_HELPY) reveals the presence of alphaL motif related to RNA binding Proteins, 75, 2009
3DH3	Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate 分子名称: Ribosomal large subunit pseudouridine synthase F, stem loop fragment of E. Coli 23S RNA 著者 Alian, A, DeGiovanni, A, Stroud, R.M, Finer-Moore, J.S. 登録日 2008-06-16 公開日 2009-04-28 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structure of an RluF-RNA complex: a base-pair rearrangement is the key to selectivity of RluF for U2604 of the ribosome. J.Mol.Biol., 388, 2009
4V64	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Borovinskaya, M.A, Shoji, S, Fredrick, K, Cate, J.H.D. 登録日 2008-06-11 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural basis for hygromycin B inhibition of protein biosynthesis Rna, 14, 2008
4V63	Structural basis for translation termination on the 70S ribosome. 分子名称: 16S RRNA, 23S RRNA, 30S ribosomal protein S10, ... 著者 Laurberg, M, Asahara, H, Korostelev, A, Zhu, J, Trakhanov, S, Noller, H.F. 登録日 2008-05-16 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.207 Å) 主引用文献 Structural basis for translation termination on the 70S ribosome Nature, 454, 2008
2ZM6	Crystal structure of the Thermus thermophilus 30S ribosomal subunit 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Kaminishi, T, Wang, H, Kawazoe, M, Ishii, R, Schluenzen, F, Hanawa-Suetsugu, K, Wilson, D.N, Nomura, M, Takemoto, C, Shirouzu, M, Fucini, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2008-04-11 公開日 2009-04-14 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Crystal structure of the Thermus thermophilus 30S ribosomal subunit To be Published
2VQF	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding 分子名称: 16S RRNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Kurata, S, Weixlbaumer, A, Ohtsuki, T, Shimazaki, T, Wada, T, Kirino, Y, Takai, K, Watanabe, K, Ramakrishnan, V, Suzuki, T. 登録日 2008-03-14 公開日 2008-04-29 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Modified Uridines with C5-Methylene Substituents at the First Position of the tRNA Anticodon Stabilize U.G Wobble Pairing During Decoding. J.Biol.Chem., 283, 2008
2VQE	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding 分子名称: 16S RRNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Kurata, S, Weixlbaumer, A, Ohtsuki, T, Shimazaki, T, Wada, T, Kirino, Y, Takai, K, Watanabe, K, Ramakrishnan, V, Suzuki, T. 登録日 2008-03-13 公開日 2008-04-29 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Modified Uridines with C5-Methylene Substituents at the First Position of the tRNA Anticodon Stabilize U.G Wobble Pairing During Decoding. J.Biol.Chem., 283, 2008
4V5B	Structure of PDF binding helix in complex with the ribosome. 分子名称: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Bingel-Erlenmeyer, R, Kohler, R, Kramer, G, Sandikci, A, Antolic, S, Maier, T, Schaffitzel, C, Wiedmann, B, Bukau, B, Ban, N. 登録日 2007-11-22 公開日 2014-07-09 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.74 Å) 主引用文献 A Peptide Deformylase-Ribosome Complex Reveals Mechanism of Nascent Chain Processing. Nature, 452, 2008
3BBU	The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex 分子名称: Heat Shock Protein 15 著者 Jiang, L, Abrahams, J.P. 登録日 2007-11-11 公開日 2008-10-21 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Recycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15. J.Mol.Biol., 386, 2009
4V61	Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome. 分子名称: 16S rRNA, 23S rRNA, 4.8S rRNA, ... 著者 Sharma, M.R, Wilson, D.N, Datta, P.P, Barat, C, Schluenzen, F, Fucini, P, Agrawal, R.K. 登録日 2007-11-09 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (9.4 Å) 主引用文献 Cryo-EM study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins Proc.Natl.Acad.Sci.Usa, 104, 2007
4V57	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Borovinskaya, M.A, Shoji, S, Holton, J.M, Fredrick, K, Cate, J.H.D. 登録日 2007-07-21 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 A steric block in translation caused by the antibiotic spectinomycin. Acs Chem.Biol., 2, 2007
4V56	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Borovinskaya, M.A, Shoji, S, Holton, J.M, Fredrick, K, Cate, J.H.D. 登録日 2007-07-21 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.93 Å) 主引用文献 A steric block in translation caused by the antibiotic spectinomycin. Acs Chem.Biol., 2, 2007
4V4J	Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. 分子名称: 16S RNA, 23S LARGE SUBUNIT RIBOSOMAL RNA, 30S ribosomal protein S10, ... 著者 Korostelev, A, Trakhanov, S, Asahara, H, Laurberg, M, Noller, H.F. 登録日 2007-07-18 公開日 2014-07-09 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (3.83 Å) 主引用文献 Interactions and dynamics of the Shine Dalgarno helix in the 70S ribosome. Proc.Natl.Acad.Sci.Usa, 104, 2007
4V5A	Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Weixlbaumer, A, Petry, S, Dunham, C.M, Selmer, M, Kelley, A.C, Ramakrishnan, V. 登録日 2007-06-28 公開日 2014-07-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Crystal structure of the ribosome recycling factor bound to the ribosome. Nat. Struct. Mol. Biol., 14, 2007

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