PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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2ZIF	Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine 分子名称: Putative modification methylase, S-ADENOSYLMETHIONINE 著者 Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2008-02-15 公開日 2008-07-29 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins, 73, 2008
2VF8	Crystal structure of UvrA2 from Deinococcus radiodurans 分子名称: ADENOSINE-5'-DIPHOSPHATE, EXCINUCLEASE ABC SUBUNIT A, PHOSPHATE ION, ... 著者 Timmins, J, Gordon, E, Caria, S, Leonard, G, Kuo, M.S, Monchois, V, McSweeney, S. 登録日 2007-10-31 公開日 2008-12-16 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural and Mutational Analyses of Deinococcus Radiodurans Uvra2 Provide Insight Into DNA Binding and Damage Recognition by Uvras. Structure, 17, 2009
5NGJ	Crystal structure of pb6, major tail tube protein of bacteriophage T5 分子名称: CHLORIDE ION, Tail tube protein 著者 Arnaud, C.-A, Effantin, G, Vives, C, Engilberge, S, Bacia, M, Boulanger, P, Girard, E, Schoehn, G, Breyton, C. 登録日 2017-03-17 公開日 2018-01-03 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Bacteriophage T5 tail tube structure suggests a trigger mechanism for Siphoviridae DNA ejection. Nat Commun, 8, 2017
4PU8	Shewanella oneidensis Toxin Antitoxin System Antitoxin Protein HipB Resolution 2.35 分子名称: Toxin-antitoxin system antidote transcriptional repressor Xre family 著者 Wen, Y, Behiels, E, Felix, J, Elegheert, J, Vergauwen, B, Devreese, B, Savvides, S. 登録日 2014-03-12 公開日 2014-08-06 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 The bacterial antitoxin HipB establishes a ternary complex with operator DNA and phosphorylated toxin HipA to regulate bacterial persistence. Nucleic Acids Res., 42, 2014
5NV0	Human DNMT3B PWWP domain in complex with 4-(dipropylamino)butyronitrile 分子名称: 4-(dipropylamino)butanenitrile, DNA (cytosine-5)-methyltransferase 3B, SULFATE ION 著者 Rondelet, G, Wouters, J. 登録日 2017-05-03 公開日 2018-05-30 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.399 Å) 主引用文献 Targeting PWWP domain of DNA methyltransferase 3B for epigenetic cancer therapy: Identification and structural characterization of new potential protein-protein interaction inhibitors To Be Published
1GID	CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING 分子名称: COBALT HEXAMMINE(III), MAGNESIUM ION, P4-P6 RNA RIBOZYME DOMAIN 著者 Cate, J.H, Gooding, A.R, Podell, E, Zhou, K, Golden, B.L, Kundrot, C.E, Cech, T.R, Doudna, J.A. 登録日 1996-08-22 公開日 1996-12-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of a group I ribozyme domain: principles of RNA packing. Science, 273, 1996
2CH0	Solution structure of the human MAN1 C-terminal domain (residues 655- 775) 分子名称: INNER NUCLEAR MEMBRANE PROTEIN MAN1 著者 Caputo, S, Couprie, J, Duband-Goulet, I, Lin, F, Braud, S, Gondry, M, Worman, H.J, Gilquin, B, Zinn-Justin, S. 登録日 2006-03-10 公開日 2006-05-16 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The carboxyl-terminal nucleoplasmic region of MAN1 exhibits a DNA binding winged helix domain. J. Biol. Chem., 281, 2006
8BD4	TniQ-capped Tns-ATP-dsDNA complex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(P*GP*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*C)-3'), MAGNESIUM ION, ... 著者 Querques, I, Schmitz, M, Oberli, S, Chanez, C, Jinek, M. 登録日 2022-10-18 公開日 2022-12-28 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.44 Å) 主引用文献 Structural basis for the assembly of the type V CRISPR-associated transposon complex. Cell, 185, 2022
4PU7	Shewanella oneidensis Toxin Antitoxin System Antitoxin Protein HipB Resolution 1.85 分子名称: Toxin-antitoxin system antidote transcriptional repressor Xre family 著者 Wen, Y, Behiels, E, Felix, J, Elegheert, J, Vergauwen, B, Devreese, B, Savvides, S. 登録日 2014-03-12 公開日 2014-08-06 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 The bacterial antitoxin HipB establishes a ternary complex with operator DNA and phosphorylated toxin HipA to regulate bacterial persistence. Nucleic Acids Res., 42, 2014
6JE3	Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) with 5 nt overhang 分子名称: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9, non-target DNA strand, ... 著者 Sun, W, Yang, J, Cheng, Z, Liu, C, Wang, K, Huang, X, Wang, Y. 登録日 2019-02-03 公開日 2019-11-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.931 Å) 主引用文献 Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States. Mol.Cell, 76, 2019
5CYS	Structure of the enzyme-product complex resulting from TDG action on a GcaC mismatch 分子名称: ACETIC ACID, DNA (28-MER), G/T mismatch-specific thymine DNA glycosylase 著者 Pozharski, E, Malik, S.S, Drohat, A.C. 登録日 2015-07-30 公開日 2015-09-16 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Characterizing the enzyme-product complexes of thymine DNA glycosylase using crystallography and NMR Nucleic Acids Res., 2015
2HQL	Crystal structure of a small single-stranded DNA binding protein from Mycoplasma pneumoniae 分子名称: Hypothetical protein MG376 homolog 著者 Das, D, Berkeley Structural Genomics Center (BSGC) 登録日 2006-07-18 公開日 2007-05-01 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a novel single-stranded DNA binding protein from Mycoplasma pneumoniae. Proteins, 67, 2007
2ZIE	Crystal Structure of TTHA0409, Putatative DNA Modification Methylase from Thermus thermophilus HB8- Selenomethionine derivative 分子名称: Putative modification methylase 著者 Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2008-02-15 公開日 2008-07-29 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins, 73, 2008
2GKU	Monomeric human telomere DNA tetraplex with 3+1 strand fold topology, two edgewise loops and double-chain reversal loop, NMR, 12 structures 分子名称: Human telomere DNA 著者 Luu, K.N, Phan, A.T, Kuryavyi, V.V, Lacroix, L, Patel, D.J. 登録日 2006-04-03 公開日 2006-08-15 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure of the human telomere in k(+) solution: an intramolecular (3 + 1) g-quadruplex scaffold. J.Am.Chem.Soc., 128, 2006
2N21	Solution structure of complex between DNA G-quadruplex and G-quadruplex recognition domain of RHAU 分子名称: ATP-dependent RNA helicase DHX36, DNA (5'-D(*TP*TP*GP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*T)-3') 著者 Heddi, B, Cheong, V.V, Martadinata, H, Phan, A.T. 登録日 2015-04-25 公開日 2015-07-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Insights into G-quadruplex specific recognition by the DEAH-box helicase RHAU: Solution structure of a peptide-quadruplex complex. Proc.Natl.Acad.Sci.USA, 112, 2015
2LI6	1H, 13C, and 15N Chemical Shift Assignments for yeast protein 分子名称: SWI/SNF chromatin-remodeling complex subunit SWI1 著者 Wang, T, Zhang, J, Tu, X. 登録日 2011-08-24 公開日 2012-04-25 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of SWI1 ARID domain from Saccharomyces cerevisiae and its non-specific binding to DNA Proteins, 2012
2CS1	Solution structure of the HMG domain of human DNA mismatch repair protein 分子名称: PMS1 protein homolog 1 著者 Kurosaki, C, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-05-20 公開日 2005-11-20 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the HMG domain of human DNA mismatch repair protein To be published
7V9G	Native BEN4 domain of protein Bend3 with DNA 分子名称: BEN domain-containing protein 3, DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)-3'), DNA (5'-D(*TP*GP*GP*CP*CP*CP*CP*AP*CP*GP*CP*GP*GP*TP*GP*C)-3') 著者 Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B. 登録日 2021-08-25 公開日 2022-02-16 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation. Science, 375, 2022
7V9I	The Monomer mutant of BEN4 domain of protein Bend3 with DNA 分子名称: BEN domain-containing protein 3, DNA (5'-D(*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*CP*CP*AP*CP*GP*CP*GP*GP*T)-3') 著者 Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B. 登録日 2021-08-25 公開日 2022-02-16 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation. Science, 375, 2022
7V9F	Selenomethionine mutant (L740Sem) of BEN4 domain of protein Bend3 with DNA 分子名称: BEN domain-containing protein 3, CITRIC ACID, DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)-3'), ... 著者 Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B. 登録日 2021-08-25 公開日 2022-02-16 最終更新日 2022-03-16 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation. Science, 375, 2022
7V94	Cryo-EM structure of the Cas12c2-sgRNA-target DNA ternary complex 分子名称: Cas12c2, sgRNA, target DNA (non target strand), ... 著者 Kurihara, N, Hirano, H, Tomita, A, Kobayashi, K, Kusakizako, T, Nishizawa, T, Yamashita, K, Nishimasu, H, Nureki, O. 登録日 2021-08-24 公開日 2022-04-13 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structure of the type V-C CRISPR-Cas effector enzyme. Mol.Cell, 82, 2022
3V9S	Crystal structure of RNase T in complex with a product ssDNA (AAC) with one Mg in the active site 分子名称: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'), MAGNESIUM ION, ... 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2011-12-28 公開日 2012-07-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
8C7K	YdaS from E. coli O157:H7 cryptic prophage CP-933P 分子名称: Phage antirepressor protein Cro 著者 Prolic-Kalinsek, M, Volkov, A.N, Loris, R. 登録日 2023-01-16 公開日 2023-01-25 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7. Acta Crystallogr D Struct Biol, 79, 2023
1TX3	HINCII BOUND TO COGNATE DNA 分子名称: 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3', SODIUM ION, Type II restriction enzyme HindII 著者 Horton, N.C, Dorner, L.F, Perona, J.J. 登録日 2004-07-01 公開日 2005-02-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Ca2+ binding in the active site of HincII: implications for the catalytic mechanism Biochemistry, 43, 2004
2RHA	Crystal structure of a predicted dna-binding transcriptional regulator (saro_1072) from novosphingobium aromaticivorans dsm at 2.10 A resolution 分子名称: CHLORIDE ION, GLYCEROL, SULFATE ION, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2007-10-08 公開日 2007-10-30 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of predicted DNA-binding transcriptional regulator (YP_496351.1) from Novosphingobium aromaticivorans DSM 12444 at 2.10 A resolution To be published

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