PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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8EVS	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-20 公開日 2023-09-06 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (2.62 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EYT	30S_delta_ksgA+KsgA complex 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Sun, J, Kinman, L.F, Jahagirdar, D, Ortega, J, Davis, J.H. 登録日 2022-10-28 公開日 2023-09-06 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 KsgA facilitates ribosomal small subunit maturation by proofreading a key structural lesion. Nat.Struct.Mol.Biol., 30, 2023
6MUX	The structure of the Plasmodium falciparum 20S proteasome in complex with one PA28 activator 分子名称: 20S proteasome alpha-1 subunit, 20S proteasome alpha-2 subunit, 20S proteasome alpha-3 subunit, ... 著者 Metcalfe, R.D, Xie, S.C, Hanssen, E, Gillett, D.L, Leis, A.P, Tilley, L, Griffin, M.D.W. 登録日 2018-10-23 公開日 2019-08-07 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 The structure of the PA28-20S proteasome complex from Plasmodium falciparum and implications for proteostasis. Nat Microbiol, 4, 2019
8IHT	Rpd3S bound to the nucleosome 分子名称: CALCIUM ION, Chromatin modification-related protein EAF3, DNA (164-MER), ... 著者 Zhang, Y, Gang, C. 登録日 2023-02-23 公開日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.72 Å) 主引用文献 Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme. Cell Res., 33, 2023
5JUO	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 5.8S ribosomal RNA, ... 著者 Abeyrathne, P, Koh, C.S, Grant, T, Grigorieff, N, Korostelev, A.A. 登録日 2016-05-10 公開日 2016-10-05 最終更新日 2019-11-27 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome. Elife, 5, 2016
7ER3	Crystal structure of beta-lactoglobulin complexed with chloroquine 分子名称: (4S)-N~4~-(7-chloroquinolin-4-yl)-N~1~,N~1~-diethylpentane-1,4-diamine, Major allergen beta-lactoglobulin 著者 Yao, Q, Ma, J, Xing, Y, Zang, J. 登録日 2021-05-05 公開日 2022-05-18 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.598 Å) 主引用文献 Binding of Chloroquine to Whey Protein Relieves Its Cytotoxicity while Enhancing Its Uptake by Cells. J.Agric.Food Chem., 69, 2021
5KGF	Structural model of 53BP1 bound to a ubiquitylated and methylated nucleosome, at 4.5 A resolution 分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ... 著者 Wilson, M.D, Benlekbir, S, Sicheri, F, Rubinstein, J.L, Durocher, D. 登録日 2016-06-13 公開日 2016-07-27 最終更新日 2020-01-15 実験手法 ELECTRON MICROSCOPY (4.54 Å) 主引用文献 The structural basis of modified nucleosome recognition by 53BP1. Nature, 536, 2016
5KOQ	Discovery of TAK-272: A Novel, Potent and Orally Active Renin In-hibitor 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-~{tert}-butyl-4-(furan-2-ylmethylamino)-~{N}-(2-methylpropyl)-~{N}-[(3~{S})-piperidin-3-yl]pyrimidine-5-carboxamide, DI(HYDROXYETHYL)ETHER, ... 著者 Snell, G.P, Behnke, C.A, Okada, K, Hideyuki, O, Sang, B.-C, Lane, W. 登録日 2016-07-01 公開日 2016-11-02 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structure-based design of a new series of N-(piperidin-3-yl)pyrimidine-5-carboxamides as renin inhibitors. Bioorg.Med.Chem., 24, 2016
5KOB	Crystal structure of a peptide deformylase from Burkholderia xenovorans 分子名称: 1,2-ETHANEDIOL, FE (II) ION, FORMIC ACID, ... 著者 SSGCID, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2016-06-30 公開日 2016-07-13 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structure of a peptide deformylase from Burkholderia xenovorans to be published
7FDL	Crystal structure of transcription factor WER in complex with EGL3 分子名称: Transcription factor EGL1, Transcription factor WER 著者 Luo, Q, Wang, B. 登録日 2021-07-17 公開日 2022-07-20 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.897 Å) 主引用文献 Structural insights into partner selection for MYB and bHLH transcription factor complexes. Nat.Plants, 8, 2021
8JLD	Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-02 公開日 2023-10-04 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.48 Å) 主引用文献 Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II. Nucleic Acids Res., 51, 2023
6NK1	EphA2 LBD in complex with bA-WLA-YRPKbio peptide 分子名称: ACETATE ION, Ephrin type-A receptor 2, GLYCEROL, ... 著者 Lechtenberg, B.C, Pasquale, E.B. 登録日 2019-01-04 公開日 2019-05-01 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Engineering nanomolar peptide ligands that differentially modulate EphA2 receptor signaling. J.Biol.Chem., 294, 2019
7EVO	The cryo-EM structure of the human 17S U2 snRNP 分子名称: HIV Tat-specific factor 1, PHD finger-like domain-containing protein 5A, RNA helicase, ... 著者 Zhang, X, Zhan, X, Shi, Y. 登録日 2021-05-21 公開日 2022-08-03 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Structural insights into branch site proofreading by human spliceosome. Nat.Struct.Mol.Biol., 2024
4N5C	Crystal structure of Ypp1 分子名称: Cargo-transport protein YPP1 著者 Wu, X, Chi, R.J, Baskin, J.M, Lucast, L, Burd, C.G, De Camilli, P, Reinisch, K.M. 登録日 2013-10-09 公開日 2014-01-22 最終更新日 2014-03-19 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Structural insights into assembly and regulation of the plasma membrane phosphatidylinositol 4-kinase complex. Dev.Cell, 28, 2014
5QU6	Crystal Structure of swapped human Nck SH3.1 domain, 1.8A, triclinic 分子名称: Cytoplasmic protein NCK1 著者 Rudolph, M.G. 登録日 2019-12-13 公開日 2020-02-12 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.816 Å) 主引用文献 Small molecule AX-024 reduces T cell proliferation independently of CD3ε/Nck1 interaction, which is governed by a domain swap in the Nck1-SH3.1 domain. J.Biol.Chem., 295, 2020
1ESY	NMR STRUCTURE OF STEM LOOP SL2 OF THE HIV-1 PSI RNA PACKAGING SIGNAL REVEALS A NOVEL A-U-A BASE-TRIPLE PLATFORM 分子名称: RNA (5'-R(P*GP*GP*CP*GP*AP*CP*UP*GP*GP*UP*GP*AP*GP*UP*AP*CP*GP*CP*C)-3') 著者 Amarasinghe, G.K, De Guzman, R.N, Turner, R.B, Summers, M.F. 登録日 2000-04-11 公開日 2000-05-31 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform. J.Mol.Biol., 299, 2000
8JDI	Crystal structure of Cas7-AcrIF25 complex 分子名称: AcrIF25, CRISPR-associated protein Csy3 著者 Yang, J, Wang, J, Wang, Y. 登録日 2023-05-14 公開日 2024-05-29 最終更新日 2024-07-24 実験手法 X-RAY DIFFRACTION (3.372 Å) 主引用文献 An anti-CRISPR that pulls apart a CRISPR-Cas complex. Nature, 2024
6O9K	70S initiation complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Frank, J, Gonzalez Jr, R.L, kaledhonkar, S, Fu, Z, Caban, K, Li, W, Chen, B, Sun, M. 登録日 2019-03-14 公開日 2019-05-29 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Late steps in bacterial translation initiation visualized using time-resolved cryo-EM. Nature, 570, 2019
8G6W	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe 分子名称: 16S rRNA, 2-AMINO-BENZAMIDE, 23S rRNA, ... 著者 Majumdar, C, Cate, J.H.D. 登録日 2023-02-16 公開日 2023-04-05 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.02 Å) 主引用文献 Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
8G6X	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe 分子名称: 23S rRNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), 3-aminobenzamide, ... 著者 Majumdar, C, Cate, J.H.D. 登録日 2023-02-16 公開日 2023-03-22 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.31 Å) 主引用文献 Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
8G6Y	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe 分子名称: 23S rRNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), 3-aminopyridine-4-carboxamide, ... 著者 Majumdar, C, Cate, J.H.D. 登録日 2023-02-16 公開日 2023-04-05 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.09 Å) 主引用文献 Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
8GRM	Cryo-EM structure of PRC1 bound to H2AK119-UbcH5b-Ub nucleosome 分子名称: COMMD3 protein, DNA (144-MER), DNA (145-MER), ... 著者 Ai, H.S, Zebin, T, Zhihend, D, Jiakun, T, Liying, Z, Jia-Bin, L, Man, P, Liu, L. 登録日 2022-09-02 公開日 2023-04-12 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.05 Å) 主引用文献 Synthetic E2-Ub-nucleosome conjugates for studying nucleosome ubiquitination. Chem, 2023
8OIN	55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S15, ... 著者 Saurer, M, Leibundgut, M, Scaiola, A, Schoenhut, T, Ban, N. 登録日 2023-03-23 公開日 2023-06-14 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Molecular basis of translation termination at noncanonical stop codons in human mitochondria. Science, 380, 2023
7DCT	Crystal structure of HSF1 DNA-binding domain in complex with 3-site HSE DNA (24 bp) 分子名称: DNA (5'-D(*AP*CP*TP*CP*GP*CP*GP*AP*AP*TP*AP*TP*TP*CP*TP*AP*GP*AP*AP*CP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*GP*TP*TP*CP*TP*AP*GP*AP*AP*TP*AP*TP*TP*CP*GP*CP*GP*AP*G)-3'), Heat shock factor protein 1, ... 著者 Feng, N, Liu, W. 登録日 2020-10-27 公開日 2021-07-14 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 Structures of heat shock factor trimers bound to DNA. Iscience, 24, 2021
1N32	Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin 分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Ogle, J.M, Murphy IV, F.V, Tarry, M.J, Ramakrishnan, V. 登録日 2002-10-25 公開日 2002-11-29 最終更新日 2019-11-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form Cell(Cambridge,Mass.), 111, 2002

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