PDB: 2824 件ウェブページステータス検索Chemie searchBIRD

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8OPC	Virus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNA 分子名称: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (2.99 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPJ	Global refinement of cubic assembly from truncated PVY coat protein with K176C mutation 分子名称: Genome polyprotein (Fragment) 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (2.99 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPG	Virus-like Particle based on PVY coat protein with dC79 deletion with RNA-free helical architecture 分子名称: Genome polyprotein (Fragment) 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPD	Virus-like Particle based on PVY coat protein with dC40 deletion with stacked-ring architecture 分子名称: Genome polyprotein (Fragment) 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPL	Virus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNA 分子名称: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (2.41 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPA	Virus-like Particle based on PVY coat protein with stacked-ring architecture 分子名称: Genome polyprotein (Fragment) 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.34 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPE	Virus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNA 分子名称: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.09 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPF	Virus-like Particle based on PVY coat protein with dC60 deletion with RNA-free helical architecture 分子名称: Genome polyprotein (Fragment) 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (2.83 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPK	Local refinement of cubic assembly from truncated PVY coat protein with K176C mutation 分子名称: Genome polyprotein 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.16 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
6YRD	SFX structure of dye-type peroxidase DtpB in the ferryl state 分子名称: MAGNESIUM ION, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Lucic, M, Axford, D.A, Owen, R.L, Worrall, J.A.R, Hough, M.A. 登録日 2020-04-20 公開日 2021-01-13 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in Fe IV =O Formation. Angew.Chem.Int.Ed.Engl., 59, 2020
6YRC	Spectroscopically-validated structure of DtpB from Streptomyces lividans in the ferric state 分子名称: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, GLYCEROL, MAGNESIUM ION, ... 著者 Lucic, M, Dworkowski, F.S.N, Worrall, J.A.R, Hough, M.A. 登録日 2020-04-20 公開日 2021-01-13 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in Fe IV =O Formation. Angew.Chem.Int.Ed.Engl., 59, 2020
6YR4	Dye-type peroxidase DtpB in the ferryl state: Spectroscopically Validated composite structure 分子名称: MAGNESIUM ION, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Lucic, M, Dworkowski, F.S.N, Worrall, J.A.R, Hough, M.A. 登録日 2020-04-19 公開日 2021-01-13 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in Fe IV =O Formation. Angew.Chem.Int.Ed.Engl., 59, 2020
6YRJ	SFX structure of dye-type peroxidase DtpB in the ferric state 分子名称: MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE, Putative iron-dependent peroxidase 著者 Lucic, M, Axford, D.A, Owen, R.L, Worrall, J.A.R, Hough, M.A. 登録日 2020-04-20 公開日 2021-01-13 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in Fe IV =O Formation. Angew.Chem.Int.Ed.Engl., 59, 2020
6UAE	Ketosteroid isomerase (C. testosteroni) with truncated & designed loop for precise positioning of a catalytic E38 分子名称: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID, EQUILENIN, Ketosteroid isomerase with designed loop, ... 著者 Krivacic, C, Kundert, K, Thompson, M.C, Fraser, J.S, Kortemme, T. 登録日 2019-09-10 公開日 2020-09-16 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Ketosteroid isomerase (C. testosteroni) with truncated & designed loop for precise positioning of a catalytic E38 To Be Published
6TB8	Dye Type Peroxidase Aa from Streptomyces lividans: spectroscopically-validated ferric state 分子名称: Deferrochelatase/peroxidase, PROTOPORPHYRIN IX CONTAINING FE 著者 Lucic, M, Moreno-Chicano, T.M, Hough, M.A, Dworkowski, F.S.N, Worrall, J.A.R. 登録日 2019-11-01 公開日 2020-04-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 A subtle structural change in the distal haem pocket has a remarkable effect on tuning hydrogen peroxide reactivity in dye decolourising peroxidases from Streptomyces lividans. Dalton Trans, 49, 2020
8C18	Solution structure of carotenoid-binding protein AstaPo1 in complex with astaxanthin 分子名称: ASTAXANTHIN, Astaxanthin binding fasciclin family protein 著者 Kornilov, F.D, Savitskaya, A.G, Slonimskiy, Y.B, Goncharuk, S.A, Sluchanko, N.N, Mineev, K.S. 登録日 2022-12-20 公開日 2023-04-05 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Structural basis for the ligand promiscuity of the neofunctionalized, carotenoid-binding fasciclin domain protein AstaP. Commun Biol, 6, 2023
6TI9	Human transthyretin (TTR) complexed with (E)-3-(((3,5-dibromo-2-hydroxybenzylidene)amino)oxy)propanoic acid. 分子名称: 3-[(~{E})-[3,5-bis(bromanyl)-2-oxidanyl-phenyl]methylideneamino]oxypropanoic acid, GLYCEROL, S-1,2-PROPANEDIOL, ... 著者 Ciccone, L, Nencetti, S, Orlandini, E, Rossello, A, Legrand, P, Shepard, W. 登録日 2019-11-22 公開日 2020-10-21 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Monoaryl derivatives as transthyretin fibril formation inhibitors: Design, synthesis, biological evaluation and structural analysis. Bioorg.Med.Chem., 28, 2020
5OPH	G-quadruplex structure of DNA oligonucleotide containing GGGGCC repeats linked to ALS and FTD 分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3') 著者 Brcic, J, Plavec, J. 登録日 2017-08-09 公開日 2018-08-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR structure of a G-quadruplex formed by four d(G4C2) repeats: insights into structural polymorphism. Nucleic Acids Res., 46, 2018
6TJN	Human transthyretin (TTR) complexed with (E)-3-(((4-hydroxybenzylidene)amino)oxy)propanoic acid 分子名称: 3-[(~{E})-(4-hydroxyphenyl)methylideneamino]oxypropanoic acid, Transthyretin 著者 Ciccone, L, Shepard, W, Nencetti, S, Orlandini, E, Rossello, A. 登録日 2019-11-26 公開日 2020-12-16 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.702 Å) 主引用文献 Monoaryl derivatives as transthyretin fibril formation inhibitors: Design, synthesis, biological evaluation and structural analysis. Bioorg.Med.Chem., 28, 2020
8QJ0	Room-temperature Serial Synchrotron Crystallography structure of Spinacia oleracea RuBisCO 分子名称: MAGNESIUM ION, Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small subunit, ... 著者 Bjelcic, M, Neutze, R, Aurelius, O, Nan, J, Ursby, T. 登録日 2023-09-12 公開日 2024-05-29 最終更新日 2024-07-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Room-temperature serial synchrotron crystallography structure of Spinacia oleracea RuBisCO. Acta Crystallogr.,Sect.F, 80, 2024
3DTK	Crystal structure of the IRRE protein, a central regulator of DNA damage repair in deinococcaceae 分子名称: CHLORIDE ION, IRRE PROTEIN, ZINC ION 著者 Vujicic-Zagar, A, Dulermo, R, Le Gorrec, M, Vannier, F, Servant, P, Sommer, S, de Groot, A, Serre, L. 登録日 2008-07-15 公開日 2009-02-17 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.24 Å) 主引用文献 Crystal structure of the IrrE protein, a central regulator of DNA damage repair in deinococcaceae J.Mol.Biol., 386, 2009
3DTI	Crystal structure of the IRRE protein, a central regulator of DNA damage repair in deinococcaceae 分子名称: IRRE protein, ZINC ION 著者 Vujicic-Zagar, A, Dulermo, R, Le Gorrec, M, Vannier, F, Servant, P, Sommer, S, De Groot, A, Serre, L. 登録日 2008-07-15 公開日 2009-02-10 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Crystal structure of the IrrE protein, a central regulator of DNA damage repair in deinococcaceae J.Mol.Biol., 386, 2009
3DTE	Crystal structure of the IRRE protein, a central regulator of DNA damage repair in deinococcaceae 分子名称: IrrE protein 著者 Vujicic-Zagar, A, Dulermo, R, Le Gorrec, M, Vannier, F, Servant, P, Sommer, S, De Groot, A, Serre, L. 登録日 2008-07-15 公開日 2009-02-10 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of the IrrE protein, a central regulator of DNA damage repair in deinococcaceae J.Mol.Biol., 386, 2009
5E4O	Human transthyretin (TTR) complexed with (Z)-((3,4-Dichloro-phenyl)-methyleneaminooxy)-acetic acid 分子名称: ({(Z)-[(3,4-dichlorophenyl)(phenyl)methylidene]amino}oxy)acetic acid, Transthyretin 著者 Ciccone, L, Savko, M, Nencetti, S, Rossello, A, Orlandini, E, Stura, E.A. 登録日 2015-10-06 公開日 2016-03-23 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Synthesis and structural analysis of halogen substituted fibril formation inhibitors of Human Transthyretin (TTR). J Enzyme Inhib Med Chem, 31, 2016
3HZ3	Lactobacillus reuteri N-terminally truncated glucansucrase GTF180(D1025N)-sucrose complex 分子名称: CALCIUM ION, Glucansucrase, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose 著者 Vujicic-Zagar, A, Pijning, T, Kralj, S, Eeuwema, W, Dijkhuizen, L, Dijkstra, B.W. 登録日 2009-06-23 公開日 2010-06-30 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.22 Å) 主引用文献 Crystal structure of a 117 kDa glucansucrase fragment provides insight into evolution and product specificity of GH70 enzymes Proc.Natl.Acad.Sci.USA, 107, 2010

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