PDB: 47720 件ウェブページステータス検索Chemie searchBIRD

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5W65	RNA polymerase I Initial Transcribing Complex State 2 分子名称: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... 著者 Han, Y, He, Y. 登録日 2017-06-16 公開日 2017-08-02 最終更新日 2019-11-27 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structural mechanism of ATP-independent transcription initiation by RNA polymerase I. Elife, 6, 2017
5W64	RNA Polymerase I Initial Transcribing Complex State 1 分子名称: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... 著者 Han, Y, He, Y. 登録日 2017-06-16 公開日 2017-07-26 最終更新日 2019-11-27 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural mechanism of ATP-independent transcription initiation by RNA polymerase I. Elife, 6, 2017
6NUO	Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Subaramanian, S, Hong, S, Maehigashi, T, Dunham, C.M. 登録日 2019-02-01 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
2WAQ	The complete structure of the archaeal 13-subunit DNA-directed RNA Polymerase 分子名称: DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO11 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO12 SUBUNIT, ... 著者 Korkhin, Y, Unligil, U.M, Littlefield, O, Nelson, P.J, Stuart, D.I, Sigler, P.B, Bell, S.D, Abrescia, N.G.A. 登録日 2009-02-11 公開日 2009-05-19 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure. Plos Biol., 7, 2009
6NWY	Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Subaramanian, S, Hong, S, Maehigashi, T, Dunham, C.M. 登録日 2019-02-07 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
5LMX	Monomeric RNA polymerase I at 4.9 A resolution 分子名称: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... 著者 Torreira, E, Louro, J.A, Gil-Carton, D, Gallego, O, Calvo, O, Fernandez-Tornero, C. 登録日 2016-08-02 公開日 2017-03-22 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.9 Å) 主引用文献 The dynamic assembly of distinct RNA polymerase I complexes modulates rDNA transcription. Elife, 6, 2017
5LQX	Structure of F-ATPase from Pichia angusta, state3 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase AAP1 subunit, ... 著者 Vinothkumar, K.R, Montgomery, M.G, Liu, S, Walker, J.E. 登録日 2016-08-17 公開日 2016-11-16 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (7.9 Å) 主引用文献 Structure of the mitochondrial ATP synthase fromPichia angustadetermined by electron cryo-microscopy. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5LE6	Crystal structure of DARPin-DARPin rigid fusion, variant DD_D12_09_D12 分子名称: DD_D12_09_D12, GLYCEROL, SULFATE ION 著者 Batyuk, A, Wu, Y, Mittl, P.R, Plueckthun, A. 登録日 2016-06-29 公開日 2017-08-02 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Rigidly connected multispecific artificial binders with adjustable geometries. Sci Rep, 7, 2017
8Y7E	Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U12 snRNP part 分子名称: PHD finger-like domain-containing protein 5A, Small nuclear ribonucleoprotein E, Small nuclear ribonucleoprotein F, ... 著者 Bai, R, Yuan, M, Zhang, P, Luo, T, Shi, Y, Wan, R. 登録日 2024-02-04 公開日 2024-03-13 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.66 Å) 主引用文献 Structural basis of U12-type intron engagement by the fully assembled human minor spliceosome. Science, 383, 2024
5WFS	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fislage, M, Frank, J. 登録日 2017-07-12 公開日 2018-05-02 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A. Nucleic Acids Res., 46, 2018
7OBB	Cryo-EM structure of human RNA Polymerase I Open Complex 分子名称: DNA non-template strand, DNA template strand, DNA-directed RNA polymerase I subunit RPA1, ... 著者 Misiaszek, A.D, Girbig, M, Mueller, C.W. 登録日 2021-04-21 公開日 2021-12-08 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Cryo-EM structures of human RNA polymerase I. Nat.Struct.Mol.Biol., 28, 2021
7OB9	Cryo-EM structure of human RNA Polymerase I in elongation state 分子名称: DNA non-template strand, DNA template strand, DNA-directed RNA polymerase I subunit RPA1, ... 著者 Misiaszek, A.D, Girbig, M, Mueller, C.W. 登録日 2021-04-21 公開日 2021-12-08 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Cryo-EM structures of human RNA polymerase I. Nat.Struct.Mol.Biol., 28, 2021
4DV5	Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin 分子名称: 16S rRNA, MAGNESIUM ION, STREPTOMYCIN, ... 著者 Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G. 登録日 2012-02-22 公開日 2013-02-27 実験手法 X-RAY DIFFRACTION (3.683 Å) 主引用文献 A structural basis for streptomycin resistance To be Published
5LDI	Crystal structure of E.coli LigT in apo form 分子名称: CHLORIDE ION, RNA 2',3'-cyclic phosphodiesterase 著者 Myllykoski, M, Kursula, P. 登録日 2016-06-27 公開日 2017-01-18 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural aspects of nucleotide ligand binding by a bacterial 2H phosphoesterase. PLoS ONE, 12, 2017
5LQZ	Structure of F-ATPase from Pichia angusta, state1 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase OSCP subunit, ... 著者 Vinothkumar, K.R, Montgomery, M.G, Liu, S, Walker, J.E. 登録日 2016-08-17 公開日 2016-11-16 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (7 Å) 主引用文献 Structure of the mitochondrial ATP synthase fromPichia angustadetermined by electron cryo-microscopy. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5LYB	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn 分子名称: 18S rRNA, 25S rRNA, 40S Ribosomal Protein S12, ... 著者 Melnikov, S, Mailliot, J. 登録日 2016-09-26 公開日 2016-11-23 最終更新日 2016-12-14 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Molecular insights into protein synthesis with proline residues. EMBO Rep., 17, 2016
5LEK	The Transcriptional Regulator PrfA-G145S mutant from Listeria Monocytogenes in complex with a 30-bp operator PrfA-box motif 分子名称: DNA (30-MER), Listeriolysin regulatory protein 著者 Hall, M, Grundstrom, C, Begum, A, Lindberg, M, Sauer, U.H, Almqvist, F, Johansson, J, Sauer-Eriksson, A.E. 登録日 2016-06-29 公開日 2016-12-07 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis for glutathione-mediated activation of the virulence regulatory protein PrfA in Listeria. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
1JPA	Crystal Structure of unphosphorylated EphB2 receptor tyrosine kinase and juxtamembrane region 分子名称: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, neural kinase, Nuk=Eph/Elk/Eck family receptor-like tyrosine kinase 著者 Wybenga-Groot, L.E, Pawson, T, Sicheri, F. 登録日 2001-08-01 公開日 2001-10-03 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Structural basis for autoinhibition of the Ephb2 receptor tyrosine kinase by the unphosphorylated juxtamembrane region. Cell(Cambridge,Mass.), 106, 2001
8X7J	Cryo-EM structures of RNF168/UbcH5c-Ub/nucleosomes complex determined by activity-based chemical trapping strategy 分子名称: DNA (144-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Ai, H.S, Tong, Z.B, Deng, Z.H, Pan, M, Liu, L. 登録日 2023-11-24 公開日 2024-08-07 実験手法 ELECTRON MICROSCOPY (3.39 Å) 主引用文献 Capturing Snapshots of Nucleosomal H2A K13/K15 Ubiquitination Mediated by the Monomeric E3 Ligase RNF168 Biorxiv, 2024
8X7K	Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-based chemical trapping strategy (adjacent H2AK13/15 dual-monoubiquitination) 分子名称: DNA (143-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Ai, H.S, Tong, Z.B, Deng, Z.H, Pan, M, Liu, L. 登録日 2023-11-24 公開日 2024-08-07 実験手法 ELECTRON MICROSCOPY (3.27 Å) 主引用文献 Capturing Snapshots of Nucleosomal H2A K13/K15 Ubiquitination Mediated by the Monomeric E3 Ligase RNF168 Biorxiv, 2024
8X7I	Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-based E2-Ub-NCP conjugation strategy 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Ai, H.S, Tong, Z.B, Deng, Z.H, Pan, M, Liu, L. 登録日 2023-11-24 公開日 2024-08-07 実験手法 ELECTRON MICROSCOPY (3.27 Å) 主引用文献 Capturing Snapshots of Nucleosomal H2A K13/K15 Ubiquitination Mediated by the Monomeric E3 Ligase RNF168 Biorxiv, 2024
2WBY	Crystal structure of human insulin-degrading enzyme in complex with insulin 分子名称: INSULIN A CHAIN, INSULIN B CHAIN, INSULIN-DEGRADING ENZYME, ... 著者 Manolopoulou, M, Guo, Q, Malito, E, Schilling, A.B, Tang, W.J. 登録日 2009-03-06 公開日 2009-03-24 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Molecular Basis of Catalytic Chamber-Assisted Unfolding and Cleavage of Human Insulin by Human Insulin Degrading Enzyme. J.Biol.Chem., 284, 2009
1YGY	Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis 分子名称: D-3-phosphoglycerate dehydrogenase, L(+)-TARTARIC ACID 著者 Dey, S, Grant, G.A, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC) 登録日 2005-01-05 公開日 2005-01-25 最終更新日 2019-07-10 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal Structure of Mycobacterium tuberculosis D-3-Phosphoglycerate Dehydrogenase: EXTREME ASYMMETRY IN A TETRAMER OF IDENTICAL SUBUNITS J.Biol.Chem., 280, 2005
8H6K	Cryo-EM structure of human exon-defined spliceosome in the mature B state. 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ... 著者 Zhang, W, Zhan, X, Zhang, X, Bai, R, Lei, J, Yan, C, Shi, Y. 登録日 2022-10-18 公開日 2024-05-01 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structural insights into human exon-defined spliceosome prior to activation. Cell Res., 34, 2024
8H6L	Cryo-EM structure of human exon-defined spliceosome in the early B state. 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ... 著者 Zhang, W, Zhan, X, Zhang, X, Bai, R, Lei, J, Yan, C, Shi, Y. 登録日 2022-10-18 公開日 2024-05-01 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Structural insights into human exon-defined spliceosome prior to activation. Cell Res., 34, 2024

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