Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7EGQ
DownloadVisualize
BU of 7egq by Molmil
Co-transcriptional capping machineries in SARS-CoV-2 RTC: Coupling of N7-methyltransferase and 3'-5' exoribonuclease with polymerase reveals mechanisms for capping and proofreading
分子名称: Helicase, MAGNESIUM ION, Non-structural protein 10, ...
著者Yan, L.M, Yang, Y.X, Li, M.Y, Zhang, Y, Zheng, L.T, Ge, J, Huang, Y.C, Liu, Z.Y, Wang, T, Gao, S, Zhang, R, Huang, Y.Y, Guddat, L.W, Gao, Y, Rao, Z.H, Lou, Z.Y.
登録日2021-03-25
公開日2021-07-21
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Coupling of N7-methyltransferase and 3'-5' exoribonuclease with SARS-CoV-2 polymerase reveals mechanisms for capping and proofreading.
Cell, 184, 2021
5LTT
DownloadVisualize
BU of 5ltt by Molmil
Yeast 20S proteasome with human beta5i (1-138; R57T)in complex with PR-924
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, MAGNESIUM ION, ...
著者Groll, M, Huber, E.M.
登録日2016-09-07
公開日2016-11-09
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献A humanized yeast proteasome identifies unique binding modes of inhibitors for the immunosubunit beta 5i.
EMBO J., 35, 2016
7ZE3
DownloadVisualize
BU of 7ze3 by Molmil
PucD-LH2 complex from Rps. palustris
分子名称: (3'E)-3',4'-didehydro-1,2-dihydro-psi,psi-caroten-1-ol, BACTERIOCHLOROPHYLL A, Light-harvesting protein B-800-850 alpha chain, ...
著者Qian, P, Cogdell, R.J, Nguyen-Phan, T.C.
登録日2022-03-30
公開日2022-10-05
最終更新日2022-11-23
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Cryo-EM structures of light-harvesting 2 complexes from Rhodopseudomonas palustris reveal the molecular origin of absorption tuning.
Proc.Natl.Acad.Sci.USA, 119, 2022
8XQB
DownloadVisualize
BU of 8xqb by Molmil
Mature virion portal vertex of bacteriophage lambda
分子名称: Capsid decoration protein, Head completion protein, Head-tail connector protein FII, ...
著者Wang, J.W, Gu, Z.W.
登録日2024-01-05
公開日2024-04-10
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (4.07 Å)
主引用文献Structural morphing in the viral portal vertex of bacteriophage lambda.
J.Virol., 98, 2024
8A1D
DownloadVisualize
BU of 8a1d by Molmil
Structure of murine perforin-2 (Mpeg1) pore in ring form
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE, Macrophage-expressed gene 1 protein
著者Yu, X, Ni, T, Zhang, P, Gilbert, R.
登録日2022-06-01
公開日2022-07-20
最終更新日2022-12-14
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Cryo-EM structures of perforin-2 in isolation and assembled on a membrane suggest a mechanism for pore formation.
Embo J., 41, 2022
6XCM
DownloadVisualize
BU of 6xcm by Molmil
Structure of the SARS-CoV-2 spike glycoprotein in complex with the C105 neutralizing antibody Fab fragment (state 1)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Barnes, C.O, Bjorkman, P.J.
登録日2020-06-08
公開日2020-07-01
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献Structures of Human Antibodies Bound to SARS-CoV-2 Spike Reveal Common Epitopes and Recurrent Features of Antibodies.
Cell, 182, 2020
5LZU
DownloadVisualize
BU of 5lzu by Molmil
Structure of the mammalian ribosomal termination complex with accommodated eRF1
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S.
登録日2016-10-02
公開日2016-11-30
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.75 Å)
主引用文献Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes.
Cell, 167, 2016
8XOO
DownloadVisualize
BU of 8xoo by Molmil
Cryo-EM structure of the ClpC1:ClpP1P2 degradation complex in Streptomyces hawaiiensis
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent Clp protease proteolytic subunit, ...
著者Xu, X, Long, F.
登録日2024-01-01
公開日2024-03-27
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (1.84 Å)
主引用文献Structural insights into the Clp protein degradation machinery.
Mbio, 15, 2024
5LZA
DownloadVisualize
BU of 5lza by Molmil
Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H.
登録日2016-09-29
公開日2016-11-23
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献The pathway to GTPase activation of elongation factor SelB on the ribosome.
Nature, 540, 2016
7ZE8
DownloadVisualize
BU of 7ze8 by Molmil
PucE-LH2 complex from Rps. palustris
分子名称: 1,2-Dihydro-psi,psi-caroten-1-ol, BACTERIOCHLOROPHYLL A, Light-harvesting protein, ...
著者Qian, P, Cogdell, R.J, Nguyen-Phan, T.C.
登録日2022-03-30
公開日2022-10-05
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Cryo-EM structures of light-harvesting 2 complexes from Rhodopseudomonas palustris reveal the molecular origin of absorption tuning.
Proc.Natl.Acad.Sci.USA, 119, 2022
5LZZ
DownloadVisualize
BU of 5lzz by Molmil
Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S.
登録日2016-10-02
公開日2016-11-30
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.47 Å)
主引用文献Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes.
Cell, 167, 2016
6X6T
DownloadVisualize
BU of 6x6t by Molmil
Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ...
著者Molodtsov, V, Ebright, R.H, Wang, C, Su, M.
登録日2020-05-29
公開日2020-09-02
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural basis of transcription-translation coupling.
Science, 369, 2020
6TXH
DownloadVisualize
BU of 6txh by Molmil
Crystal structure of thermotoga maritima Ferritin in apo form
分子名称: EICOSANE, Ferritin, GLYCEROL, ...
著者Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S.
登録日2020-01-14
公開日2021-07-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.198 Å)
主引用文献A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021
5M32
DownloadVisualize
BU of 5m32 by Molmil
Human 26S proteasome in complex with Oprozomib
分子名称: 26S protease regulatory subunit 10B, 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, ...
著者Haselbach, D, Schrader, J, Lambrecht, F, Henneberg, F, Chari, A, Stark, H.
登録日2016-10-14
公開日2017-07-05
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Long-range allosteric regulation of the human 26S proteasome by 20S proteasome-targeting cancer drugs.
Nat Commun, 8, 2017
6XIR
DownloadVisualize
BU of 6xir by Molmil
Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
分子名称: 18S ribosomal RNA, 35S ribosomal RNA, 40S ribosomal protein S0-A, ...
著者Zhou, Y, Bartesaghi, A, Silva, G.M.
登録日2020-06-21
公開日2020-08-26
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress.
Proc.Natl.Acad.Sci.USA, 117, 2020
6TXL
DownloadVisualize
BU of 6txl by Molmil
Crystal structure of thermotoga maritima E65Q Ferritin
分子名称: EICOSANE, FE (III) ION, Ferritin, ...
著者Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S.
登録日2020-01-14
公開日2021-07-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021
6TXN
DownloadVisualize
BU of 6txn by Molmil
Crystal structure of thermotoga maritima Ferritin in apo form
分子名称: EICOSANE, Ferritin, GLYCEROL, ...
著者Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S.
登録日2020-01-14
公開日2021-07-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021
6TXM
DownloadVisualize
BU of 6txm by Molmil
Crystal structure of thermotoga maritima E65R Ferritin
分子名称: EICOSANE, Ferritin, GLYCEROL, ...
著者Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S.
登録日2020-01-14
公開日2021-07-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.198 Å)
主引用文献A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021
6TXJ
DownloadVisualize
BU of 6txj by Molmil
Crystal structure of thermotoga maritima A42V E65D Ferritin
分子名称: EICOSANE, FE (III) ION, Ferritin, ...
著者Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S, Biela, A.P.
登録日2020-01-14
公開日2021-07-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021
8XPM
DownloadVisualize
BU of 8xpm by Molmil
Mature virion portal of phage lambda with DNA
分子名称: DNA (104-MER), DNA (92-MER), Head completion protein, ...
著者Wang, J.W, Gu, Z.W.
登録日2024-01-04
公開日2024-04-10
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural morphing in the viral portal vertex of bacteriophage lambda.
J.Virol., 98, 2024
6TXK
DownloadVisualize
BU of 6txk by Molmil
Crystal structure of thermotoga maritima E65K Ferritin
分子名称: EICOSANE, FE (III) ION, Ferritin, ...
著者Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S.
登録日2020-01-14
公開日2021-07-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.359 Å)
主引用文献A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021
6TXI
DownloadVisualize
BU of 6txi by Molmil
Crystal structure of thermotoga maritima E65A Ferritin
分子名称: EICOSANE, FE (III) ION, Ferritin, ...
著者Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S.
登録日2020-01-14
公開日2021-07-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.759 Å)
主引用文献A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021
6XCN
DownloadVisualize
BU of 6xcn by Molmil
Structure of the SARS-CoV-2 spike glycoprotein in complex with the C105 neutralizing antibody Fab fragment (state 2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Barnes, C.O, Bjorkman, P.J.
登録日2020-06-08
公開日2020-07-01
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.66 Å)
主引用文献Structures of Human Antibodies Bound to SARS-CoV-2 Spike Reveal Common Epitopes and Recurrent Features of Antibodies.
Cell, 182, 2020
5LF3
DownloadVisualize
BU of 5lf3 by Molmil
Human 20S proteasome complex with Bortezomib at 2.1 Angstrom
分子名称: CHLORIDE ION, MAGNESIUM ION, N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE, ...
著者Schrader, J, Henneberg, F, Mata, R, Tittmann, K, Schneider, T.R, Stark, H, Bourenkov, G, Chari, A.
登録日2016-06-30
公開日2016-08-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The inhibition mechanism of human 20S proteasomes enables next-generation inhibitor design.
Science, 353, 2016
6TWR
DownloadVisualize
BU of 6twr by Molmil
Structure of a constitutively active CAT-PRD1 mutant of the antiterminator LicT protein.
分子名称: Beta-glucoside bgl operon antiterminator BglG family
著者Demene, H, Declerck, N, Yinshan, Y.
登録日2020-01-13
公開日2021-04-14
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Resolving the activation mechanism of the D99N antiterminator LicT protein.
J.Struct.Biol., 213, 2021

227111

件を2024-11-06に公開中

PDB statisticsPDBj update infoContact PDBjnumon